RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 ALG6Q9Y672 507 aa13.69□□□□□ -0.22
TCOF1-213ENST00000514442 ZBTB39O15060 712 aa13.69□□□□□ -0.22
TCOF1-213ENST00000514442 PLSCR1O15162 318 aa13.69□□□□□ -0.22
TCOF1-213ENST00000514442 IL18RAPO95256 599 aa13.69□□□□□ -0.22
TCOF1-213ENST00000514442 ITGA8P53708 1063 aa13.69□□□□□ -0.22
TCOF1-213ENST00000514442 FAM117BQ6P1L5 589 aa13.69□□□□□ -0.22
TCOF1-213ENST00000514442 ARMCX6Q7L4S7 300 aa13.69□□□□□ -0.22
TCOF1-213ENST00000514442 SPATA2LQ8IUW3 424 aaPredicted RBP13.69□□□□□ -0.22
TCOF1-213ENST00000514442 CDKL3Q8IVW4 592 aaPredicted RBP13.69□□□□□ -0.22
TCOF1-213ENST00000514442 DDHD1Q8NEL9 900 aa13.69□□□□□ -0.22
TCOF1-213ENST00000514442 ALKBH8Q96BT7 664 aaKnown RBP13.69□□□□□ -0.22
TCOF1-213ENST00000514442 CCT7Q99832 543 aa13.69□□□□□ -0.22
TCOF1-213ENST00000514442 NAGPAQ9UK23 515 aa13.69□□□□□ -0.22
TCOF1-213ENST00000514442 VWA5AO00534 786 aa13.69□□□□□ -0.22
TCOF1-213ENST00000514442 KCNN4O15554 427 aa13.69□□□□□ -0.22
TCOF1-213ENST00000514442 RARAP10276 462 aa13.69□□□□□ -0.22
TCOF1-213ENST00000514442 DCTN2Q13561 401 aaKnown RBP13.69□□□□□ -0.22
TCOF1-213ENST00000514442 HPDLQ96IR7 371 aa13.69□□□□□ -0.22
TCOF1-213ENST00000514442 KIAA1683Q9H0B3 1180 aa13.69□□□□□ -0.22
TCOF1-213ENST00000514442 CPA4Q9UI42 421 aa13.69□□□□□ -0.22
TCOF1-213ENST00000514442 SLC12A4Q9UP95 1085 aa13.69□□□□□ -0.22
TCOF1-213ENST00000514442 EEF1B2P24534 225 aaKnown RBP13.69□□□□□ -0.22
TCOF1-213ENST00000514442 LY6KQ17RY6 165 aa13.69□□□□□ -0.22
TCOF1-213ENST00000514442 MARK2Q7KZI7 788 aaKnown RBP13.69□□□□□ -0.22
TCOF1-213ENST00000514442 PID1Q7Z2X4 250 aa13.69□□□□□ -0.22
TCOF1-213ENST00000514442 ATP11CQ8NB49 1132 aa13.69□□□□□ -0.22
TCOF1-213ENST00000514442 CKAP2Q8WWK9 683 aa13.69□□□□□ -0.22
TCOF1-213ENST00000514442 IFT43Q96FT9 208 aa13.69□□□□□ -0.22
TCOF1-213ENST00000514442 NR1H4Q96RI1 486 aaPredicted RBP13.69□□□□□ -0.22
TCOF1-213ENST00000514442 NT5C1AQ9BXI3 368 aa13.69□□□□□ -0.22
TCOF1-213ENST00000514442 DDX18Q9NVP1 670 aaKnown RBP13.69□□□□□ -0.22
TCOF1-213ENST00000514442 GAKO14976 1311 aa13.68□□□□□ -0.22
TCOF1-213ENST00000514442 HNRNPRO43390 633 aaKnown RBP13.68□□□□□ -0.22
TCOF1-213ENST00000514442 FKBP6O75344 327 aa13.68□□□□□ -0.22
TCOF1-213ENST00000514442 SHBGP04278 402 aa13.68□□□□□ -0.22
TCOF1-213ENST00000514442 YY1P25490 414 aa13.68□□□□□ -0.22
TCOF1-213ENST00000514442 DSG3P32926 999 aa13.68□□□□□ -0.22
TCOF1-213ENST00000514442 MMP13P45452 471 aa13.68□□□□□ -0.22
TCOF1-213ENST00000514442 STX1BP61266 288 aa13.68□□□□□ -0.22
TCOF1-213ENST00000514442 P3H1Q32P28 736 aa13.68□□□□□ -0.22
TCOF1-213ENST00000514442 ZNF720Q7Z2F6 126 aa13.68□□□□□ -0.22
TCOF1-213ENST00000514442 SAR1AQ9NR31 198 aa13.68□□□□□ -0.22
TCOF1-213ENST00000514442 USP20Q9Y2K6 914 aa13.68□□□□□ -0.22
TCOF1-213ENST00000514442 DTNAQ9Y4J8 743 aa13.68□□□□□ -0.22
TCOF1-213ENST00000514442 KRT38O76015 456 aa13.68□□□□□ -0.22
TCOF1-213ENST00000514442 TTC4O95801 387 aa13.68□□□□□ -0.22
TCOF1-213ENST00000514442 PAEPP09466 180 aa13.68□□□□□ -0.22
TCOF1-213ENST00000514442 FECHP22830 423 aa13.68□□□□□ -0.22
TCOF1-213ENST00000514442 KCNJ1P48048 391 aa13.68□□□□□ -0.22
TCOF1-213ENST00000514442 KIZQ2M2Z5 673 aa13.68□□□□□ -0.22
TCOF1-213ENST00000514442 C6orf89Q6UWU4 347 aa13.68□□□□□ -0.22
TCOF1-213ENST00000514442 B3GNT6Q6ZMB0 384 aa13.68□□□□□ -0.22
TCOF1-213ENST00000514442 ATXN7L3BQ96GX2 97 aa13.68□□□□□ -0.22
TCOF1-213ENST00000514442 TRPV6Q9H1D0 765 aa13.68□□□□□ -0.22
TCOF1-213ENST00000514442 PLEKHA5Q9HAU0 1116 aa13.68□□□□□ -0.22
TCOF1-213ENST00000514442 SP110Q9HB58 689 aa13.68□□□□□ -0.22
TCOF1-213ENST00000514442 PIK3C2AO00443 1686 aa13.68□□□□□ -0.22
TCOF1-213ENST00000514442 CBX6O95503 412 aa13.68□□□□□ -0.22
TCOF1-213ENST00000514442 HMBSP08397 361 aa13.68□□□□□ -0.22
TCOF1-213ENST00000514442 CDC42EP1Q00587 391 aa13.68□□□□□ -0.22
TCOF1-213ENST00000514442 BNIP1Q12981 228 aa13.68□□□□□ -0.22
TCOF1-213ENST00000514442 GOLGA7BQ2TAP0 167 aa13.68□□□□□ -0.22
TCOF1-213ENST00000514442 TRMT5Q32P41 509 aaKnown RBP13.68□□□□□ -0.22
TCOF1-213ENST00000514442 CENPPQ6IPU0 288 aa13.68□□□□□ -0.22
TCOF1-213ENST00000514442 CPB2Q96IY4 423 aa13.68□□□□□ -0.22
TCOF1-213ENST00000514442 GLIS2Q9BZE0 524 aaPredicted RBP13.68□□□□□ -0.22
TCOF1-213ENST00000514442 FOXP3Q9BZS1 431 aa13.68□□□□□ -0.22
TCOF1-213ENST00000514442 SPATC1LQ9H0A9 340 aa13.68□□□□□ -0.22
TCOF1-213ENST00000514442 OLFML3Q9NRN5 406 aa13.68□□□□□ -0.22
TCOF1-213ENST00000514442 GID8Q9NWU2 228 aa13.68□□□□□ -0.22
TCOF1-213ENST00000514442 PCDHGC5Q9Y5F6 944 aa13.68□□□□□ -0.22
TCOF1-213ENST00000514442 A0A0A6YYK5 440 aaPredicted RBP13.68□□□□□ -0.22
TCOF1-213ENST00000514442 P4HA2O15460 535 aa13.68□□□□□ -0.22
TCOF1-213ENST00000514442 KPNA2P52292 529 aaKnown RBP13.68□□□□□ -0.22
TCOF1-213ENST00000514442 SNRPFP62306 86 aaKnown RBP13.68□□□□□ -0.22
TCOF1-213ENST00000514442 TBCCQ15814 346 aa13.68□□□□□ -0.22
TCOF1-213ENST00000514442 OLFML1Q6UWY5 402 aa13.68□□□□□ -0.22
TCOF1-213ENST00000514442 RCOR2Q8IZ40 523 aa13.68□□□□□ -0.22
TCOF1-213ENST00000514442 AGAP3Q96P47 875 aa13.68□□□□□ -0.22
TCOF1-213ENST00000514442 TBC1D10AQ9BXI6 508 aa13.68□□□□□ -0.22
TCOF1-213ENST00000514442 NMRK1Q9NWW6 199 aa13.68□□□□□ -0.22
TCOF1-213ENST00000514442 ANKRD26Q9UPS8 1709 aa13.68□□□□□ -0.22
TCOF1-213ENST00000514442 ZNF286BP0CG31 522 aa13.67□□□□□ -0.22
TCOF1-213ENST00000514442 MAGEA4P43358 317 aa13.67□□□□□ -0.22
TCOF1-213ENST00000514442 TPI1P60174 286 aa13.67□□□□□ -0.22
TCOF1-213ENST00000514442 KCNK18Q7Z418 384 aa13.67□□□□□ -0.22
TCOF1-213ENST00000514442 ZNF554Q86TJ5 538 aa13.67□□□□□ -0.22
TCOF1-213ENST00000514442 NUDCD3Q8IVD9 361 aa13.67□□□□□ -0.22
TCOF1-213ENST00000514442 ZNF570Q96NI8 536 aa13.67□□□□□ -0.22
TCOF1-213ENST00000514442 C17orf75Q9HAS0 396 aa13.67□□□□□ -0.22
TCOF1-213ENST00000514442 WDR35Q9P2L0 1181 aa13.67□□□□□ -0.22
TCOF1-213ENST00000514442 ATP9BO43861 1147 aa13.67□□□□□ -0.22
TCOF1-213ENST00000514442 TADA2AO75478 443 aa13.67□□□□□ -0.22
TCOF1-213ENST00000514442 VIL1P09327 827 aaKnown RBP13.67□□□□□ -0.22
TCOF1-213ENST00000514442 NUDT17P0C025 328 aa13.67□□□□□ -0.22
TCOF1-213ENST00000514442 TM4SF1P30408 202 aa13.67□□□□□ -0.22
TCOF1-213ENST00000514442 CUL2Q13617 745 aa13.67□□□□□ -0.22
TCOF1-213ENST00000514442 NOP9Q86U38 636 aaKnown RBP13.67□□□□□ -0.22
TCOF1-213ENST00000514442 SLC13A1Q9BZW2 595 aa13.67□□□□□ -0.22
TCOF1-213ENST00000514442 CCDC134Q9H6E4 229 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms