RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 NUSAP1Q9BXS6 441 aaKnown RBP21.85■■□□□ 1.09
SQSTM1-215ENST00000514093 GCNT4Q9P109 453 aa21.85■■□□□ 1.09
SQSTM1-215ENST00000514093 EVLQ9UI08 416 aaPredicted RBP21.85■■□□□ 1.09
SQSTM1-215ENST00000514093 GTF3C4Q9UKN8 822 aa21.85■■□□□ 1.09
SQSTM1-215ENST00000514093 MMP17Q9ULZ9 603 aa21.85■■□□□ 1.09
SQSTM1-215ENST00000514093 DSPP15924 2871 aaKnown RBP21.85■■□□□ 1.09
SQSTM1-215ENST00000514093 ATXN2Q99700 1313 aaKnown RBP21.84■■□□□ 1.09
SQSTM1-215ENST00000514093 SIM1P81133 766 aaPredicted RBP21.84■■□□□ 1.09
SQSTM1-215ENST00000514093 ATP2C1P98194 919 aaPredicted RBP21.84■■□□□ 1.09
SQSTM1-215ENST00000514093 SCARA3Q6AZY7 606 aa21.84■■□□□ 1.09
SQSTM1-215ENST00000514093 SCN4BQ8IWT1 228 aa21.84■■□□□ 1.09
SQSTM1-215ENST00000514093 CCDC26Q8TAB7 109 aa21.84■■□□□ 1.09
SQSTM1-215ENST00000514093 OLIG1Q8TAK6 271 aa21.84■■□□□ 1.09
SQSTM1-215ENST00000514093 TRMT2BQ96GJ1 504 aaKnown RBP21.84■■□□□ 1.09
SQSTM1-215ENST00000514093 MYRFLQ96LU7 910 aa21.84■■□□□ 1.09
SQSTM1-215ENST00000514093 PARVGQ9HBI0 331 aa21.84■■□□□ 1.09
SQSTM1-215ENST00000514093 DDX43Q9NXZ2 648 aaKnown RBP21.84■■□□□ 1.09
SQSTM1-215ENST00000514093 AGO2Q9UKV8 859 aaKnown RBP21.84■■□□□ 1.09
SQSTM1-215ENST00000514093 L1RE1Q9UN81 338 aa21.84■■□□□ 1.09
SQSTM1-215ENST00000514093 MSRB2Q9Y3D2 182 aa21.84■■□□□ 1.09
SQSTM1-215ENST00000514093 ANKRD11Q6UB99 2663 aaPredicted RBP21.84■■□□□ 1.09
SQSTM1-215ENST00000514093 HCRTO43612 131 aa21.83■■□□□ 1.09
SQSTM1-215ENST00000514093 NFATC1O95644 943 aa21.83■■□□□ 1.09
SQSTM1-215ENST00000514093 HDCP19113 662 aa21.83■■□□□ 1.09
SQSTM1-215ENST00000514093 ZXDBP98169 803 aa21.83■■□□□ 1.09
SQSTM1-215ENST00000514093 GAB4Q2WGN9 574 aa21.83■■□□□ 1.09
SQSTM1-215ENST00000514093 CRELD2Q6UXH1 353 aaPredicted RBP21.83■■□□□ 1.09
SQSTM1-215ENST00000514093 LPCAT2Q7L5N7 544 aa21.83■■□□□ 1.09
SQSTM1-215ENST00000514093 KCTD17Q8N5Z5 321 aa21.83■■□□□ 1.09
SQSTM1-215ENST00000514093 ALLCQ8N6M5 410 aa21.83■■□□□ 1.09
SQSTM1-215ENST00000514093 TXNDC5Q8NBS9 432 aaKnown RBP21.83■■□□□ 1.09
SQSTM1-215ENST00000514093 FIZ1Q96SL8 496 aa21.83■■□□□ 1.09
SQSTM1-215ENST00000514093 ZDHHC4Q9NPG8 344 aa21.83■■□□□ 1.09
SQSTM1-215ENST00000514093 MBD1Q9UIS9 605 aaPredicted RBP21.83■■□□□ 1.09
SQSTM1-215ENST00000514093 NBEAQ8NFP9 2946 aa21.82■■□□□ 1.08
SQSTM1-215ENST00000514093 TAF4O00268 1085 aa21.82■■□□□ 1.08
SQSTM1-215ENST00000514093 KRT18P05783 430 aaKnown RBP21.82■■□□□ 1.08
SQSTM1-215ENST00000514093 POLR2BP30876 1174 aaKnown RBP21.82■■□□□ 1.08
SQSTM1-215ENST00000514093 P2RY2P41231 377 aa21.82■■□□□ 1.08
SQSTM1-215ENST00000514093 SLC6A11P48066 632 aa21.82■■□□□ 1.08
SQSTM1-215ENST00000514093 ZNF131P52739 623 aa21.82■■□□□ 1.08
SQSTM1-215ENST00000514093 WNT7BP56706 349 aa21.82■■□□□ 1.08
SQSTM1-215ENST00000514093 GTF2BQ00403 316 aa21.82■■□□□ 1.08
SQSTM1-215ENST00000514093 MESP2Q0VG99 397 aa21.82■■□□□ 1.08
SQSTM1-215ENST00000514093 KCNB1Q14721 858 aa21.82■■□□□ 1.08
SQSTM1-215ENST00000514093 INTS6LQ5JSJ4 861 aaKnown RBP21.82■■□□□ 1.08
SQSTM1-215ENST00000514093 EMC10Q5UCC4 262 aa21.82■■□□□ 1.08
SQSTM1-215ENST00000514093 OSTM1Q86WC4 334 aa21.82■■□□□ 1.08
SQSTM1-215ENST00000514093 LEO1Q8WVC0 666 aaPredicted RBP21.82■■□□□ 1.08
SQSTM1-215ENST00000514093 FAM84AQ96KN4 292 aa21.82■■□□□ 1.08
SQSTM1-215ENST00000514093 ZNF560Q96MR9 790 aa21.82■■□□□ 1.08
SQSTM1-215ENST00000514093 ACBD6Q9BR61 282 aa21.82■■□□□ 1.08
SQSTM1-215ENST00000514093 AGAP1Q9UPQ3 857 aa21.82■■□□□ 1.08
SQSTM1-215ENST00000514093 PTPRDP23468 1912 aa21.81■■□□□ 1.08
SQSTM1-215ENST00000514093 SGK1O00141 431 aa21.81■■□□□ 1.08
SQSTM1-215ENST00000514093 TNFRSF10BO14763 440 aa21.81■■□□□ 1.08
SQSTM1-215ENST00000514093 SCAMP3O14828 347 aaKnown RBP21.81■■□□□ 1.08
SQSTM1-215ENST00000514093 ALDH1A2O94788 518 aa21.81■■□□□ 1.08
SQSTM1-215ENST00000514093 KLF8O95600 359 aaPredicted RBP21.81■■□□□ 1.08
SQSTM1-215ENST00000514093 TIE1P35590 1138 aa21.81■■□□□ 1.08
SQSTM1-215ENST00000514093 FAM193AP78312 1265 aa21.81■■□□□ 1.08
SQSTM1-215ENST00000514093 MCTP1Q6DN14 999 aa21.81■■□□□ 1.08
SQSTM1-215ENST00000514093 PIP4P1Q86T03 277 aa21.81■■□□□ 1.08
SQSTM1-215ENST00000514093 SYT12Q8IV01 421 aa21.81■■□□□ 1.08
SQSTM1-215ENST00000514093 CHCHD4Q8N4Q1 142 aa21.81■■□□□ 1.08
SQSTM1-215ENST00000514093 DEFB119Q8N690 84 aa21.81■■□□□ 1.08
SQSTM1-215ENST00000514093 FSIP1Q8NA03 581 aa21.81■■□□□ 1.08
SQSTM1-215ENST00000514093 PKMYT1Q99640 499 aa21.81■■□□□ 1.08
SQSTM1-215ENST00000514093 GTPBP2Q9BX10 602 aaKnown RBP21.81■■□□□ 1.08
SQSTM1-215ENST00000514093 ABCB6Q9NP58 842 aa21.81■■□□□ 1.08
SQSTM1-215ENST00000514093 BCCIPQ9P287 314 aaKnown RBP eCLIP21.81■■□□□ 1.08
SQSTM1-215ENST00000514093 ARHGAP26Q9UNA1 814 aa21.81■■□□□ 1.08
SQSTM1-215ENST00000514093 CACNA1EQ15878 2313 aa21.8■■□□□ 1.08
SQSTM1-215ENST00000514093 HUS1O60921 280 aa21.8■■□□□ 1.08
SQSTM1-215ENST00000514093 CFIP05156 583 aa21.8■■□□□ 1.08
SQSTM1-215ENST00000514093 ITPKAP23677 461 aa21.8■■□□□ 1.08
SQSTM1-215ENST00000514093 MRPS21P82921 87 aaKnown RBP21.8■■□□□ 1.08
SQSTM1-215ENST00000514093 TFAMQ00059 246 aaKnown RBP21.8■■□□□ 1.08
SQSTM1-215ENST00000514093 MYL7Q01449 175 aa21.8■■□□□ 1.08
SQSTM1-215ENST00000514093 SEMA3BQ13214 749 aa21.8■■□□□ 1.08
SQSTM1-215ENST00000514093 MCM6Q14566 821 aa21.8■■□□□ 1.08
SQSTM1-215ENST00000514093 SLFN12LQ6IEE8 588 aa21.8■■□□□ 1.08
SQSTM1-215ENST00000514093 SPATA2LQ8IUW3 424 aaPredicted RBP21.8■■□□□ 1.08
SQSTM1-215ENST00000514093 IL17RCQ8NAC3 791 aa21.8■■□□□ 1.08
SQSTM1-215ENST00000514093 HMGB4Q8WW32 186 aa21.8■■□□□ 1.08
SQSTM1-215ENST00000514093 SPACA7Q96KW9 195 aa21.8■■□□□ 1.08
SQSTM1-215ENST00000514093 BLOC1S4Q9NUP1 217 aa21.8■■□□□ 1.08
SQSTM1-215ENST00000514093 PCNX2A6NKB5 2137 aa21.8■■□□□ 1.08
SQSTM1-215ENST00000514093 ANAPC1Q9H1A4 1944 aa21.79■■□□□ 1.08
SQSTM1-215ENST00000514093 LEFTY2O00292 366 aa21.79■■□□□ 1.08
SQSTM1-215ENST00000514093 CYP17A1P05093 508 aa21.79■■□□□ 1.08
SQSTM1-215ENST00000514093 ITGB3P05106 788 aa21.79■■□□□ 1.08
SQSTM1-215ENST00000514093 SCP2P22307 547 aa21.79■■□□□ 1.08
SQSTM1-215ENST00000514093 PNPLA4P41247 253 aa21.79■■□□□ 1.08
SQSTM1-215ENST00000514093 MAP7D1Q3KQU3 841 aa21.79■■□□□ 1.08
SQSTM1-215ENST00000514093 LYSMD4Q5XG99 296 aa21.79■■□□□ 1.08
SQSTM1-215ENST00000514093 SLC23A3Q6PIS1 610 aa21.79■■□□□ 1.08
SQSTM1-215ENST00000514093 FILIP1Q7Z7B0 1213 aa21.79■■□□□ 1.08
SQSTM1-215ENST00000514093 PGBD3Q8N328 593 aa21.79■■□□□ 1.08
SQSTM1-215ENST00000514093 ZSWIM2Q8NEG5 633 aa21.79■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms