RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 KCNH6Q9H252 994 aa10.35□□□□□ -0.75
RNF4-221ENST00000513643 TASP1Q9H6P5 420 aa10.35□□□□□ -0.75
RNF4-221ENST00000513643 ZFP14Q9HCL3 533 aa10.35□□□□□ -0.75
RNF4-221ENST00000513643 CSNK1G1Q9HCP0 422 aa10.35□□□□□ -0.75
RNF4-221ENST00000513643 RAB20Q9NX57 234 aa10.35□□□□□ -0.75
RNF4-221ENST00000513643 OBP2AQ9NY56 170 aa10.35□□□□□ -0.75
RNF4-221ENST00000513643 HMGXB4Q9UGU5 601 aa10.35□□□□□ -0.75
RNF4-221ENST00000513643 ARMCX3Q9UH62 379 aaPredicted RBP10.35□□□□□ -0.75
RNF4-221ENST00000513643 ZMYM5Q9UJ78 669 aa10.35□□□□□ -0.75
RNF4-221ENST00000513643 BICDL2A1A5D9 508 aa10.34□□□□□ -0.75
RNF4-221ENST00000513643 P4HA1P13674 534 aa10.34□□□□□ -0.75
RNF4-221ENST00000513643 AVPR2P30518 371 aa10.34□□□□□ -0.75
RNF4-221ENST00000513643 VIPR2P41587 438 aa10.34□□□□□ -0.75
RNF4-221ENST00000513643 RAP1GAPP47736 663 aa10.34□□□□□ -0.75
RNF4-221ENST00000513643 MXI1P50539 228 aa10.34□□□□□ -0.75
RNF4-221ENST00000513643 CLCN5P51795 746 aa10.34□□□□□ -0.75
RNF4-221ENST00000513643 NDST1P52848 882 aa10.34□□□□□ -0.75
RNF4-221ENST00000513643 NUBP1P53384 320 aa10.34□□□□□ -0.75
RNF4-221ENST00000513643 MLLT6P55198 1093 aaPredicted RBP10.34□□□□□ -0.75
RNF4-221ENST00000513643 USP46P62068 366 aa10.34□□□□□ -0.75
RNF4-221ENST00000513643 PAK1Q13153 545 aa10.34□□□□□ -0.75
RNF4-221ENST00000513643 VITQ6UXI7 678 aa10.34□□□□□ -0.75
RNF4-221ENST00000513643 MON1AQ86VX9 555 aa10.34□□□□□ -0.75
RNF4-221ENST00000513643 ARID3BQ8IVW6 561 aaPredicted RBP10.34□□□□□ -0.75
RNF4-221ENST00000513643 ZNF687Q8N1G0 1237 aa10.34□□□□□ -0.75
RNF4-221ENST00000513643 UBR7Q8N806 425 aa10.34□□□□□ -0.75
RNF4-221ENST00000513643 MLKLQ8NB16 471 aa10.34□□□□□ -0.75
RNF4-221ENST00000513643 ZMIZ2Q8NF64 920 aa10.34□□□□□ -0.75
RNF4-221ENST00000513643 GPT2Q8TD30 523 aa10.34□□□□□ -0.75
RNF4-221ENST00000513643 E2F7Q96AV8 911 aa10.34□□□□□ -0.75
RNF4-221ENST00000513643 KXD1Q9BQD3 176 aa10.34□□□□□ -0.75
RNF4-221ENST00000513643 ZNF518BQ9C0D4 1074 aa10.34□□□□□ -0.75
RNF4-221ENST00000513643 ELOVL4Q9GZR5 314 aa10.34□□□□□ -0.75
RNF4-221ENST00000513643 NIF3L1Q9GZT8 377 aa10.34□□□□□ -0.75
RNF4-221ENST00000513643 ATXN3LQ9H3M9 355 aa10.34□□□□□ -0.75
RNF4-221ENST00000513643 GCNT4Q9P109 453 aa10.34□□□□□ -0.75
RNF4-221ENST00000513643 RWDD2AQ9UIY3 292 aa10.34□□□□□ -0.75
RNF4-221ENST00000513643 PTPRDP23468 1912 aa10.34□□□□□ -0.75
RNF4-221ENST00000513643 MYO15AQ9UKN7 3530 aa10.34□□□□□ -0.75
RNF4-221ENST00000513643 F8VP50 259 aa10.33□□□□□ -0.76
RNF4-221ENST00000513643 CLDN5O00501 218 aa10.33□□□□□ -0.76
RNF4-221ENST00000513643 TRIM66O15016 1216 aa10.33□□□□□ -0.76
RNF4-221ENST00000513643 P4HA2O15460 535 aa10.33□□□□□ -0.76
RNF4-221ENST00000513643 PRAMEF12O95522 483 aa10.33□□□□□ -0.76
RNF4-221ENST00000513643 GNA14O95837 355 aa10.33□□□□□ -0.76
RNF4-221ENST00000513643 CFHP08603 1231 aa10.33□□□□□ -0.76
RNF4-221ENST00000513643 PSMC3P17980 439 aa10.33□□□□□ -0.76
RNF4-221ENST00000513643 AOC1P19801 751 aa10.33□□□□□ -0.76
RNF4-221ENST00000513643 DDX6P26196 483 aaKnown RBP eCLIP10.33□□□□□ -0.76
RNF4-221ENST00000513643 PIK3CAP42336 1068 aa10.33□□□□□ -0.76
RNF4-221ENST00000513643 FMO5P49326 533 aa10.33□□□□□ -0.76
RNF4-221ENST00000513643 VCPP55072 806 aaKnown RBP10.33□□□□□ -0.76
RNF4-221ENST00000513643 ZNF268Q14587 947 aaPredicted RBP10.33□□□□□ -0.76
RNF4-221ENST00000513643 SLC44A4Q53GD3 710 aa10.33□□□□□ -0.76
RNF4-221ENST00000513643 SNX30Q5VWJ9 437 aa10.33□□□□□ -0.76
RNF4-221ENST00000513643 ASTLQ6HA08 431 aaPredicted RBP10.33□□□□□ -0.76
RNF4-221ENST00000513643 KLHL10Q6JEL2 608 aa10.33□□□□□ -0.76
RNF4-221ENST00000513643 ACOT1Q86TX2 421 aa10.33□□□□□ -0.76
RNF4-221ENST00000513643 CMTM8Q8IZV2 173 aa10.33□□□□□ -0.76
RNF4-221ENST00000513643 TMEM105Q8N8V8 129 aa10.33□□□□□ -0.76
RNF4-221ENST00000513643 STKLD1Q8NE28 680 aa10.33□□□□□ -0.76
RNF4-221ENST00000513643 DEPDC1BQ8WUY9 529 aa10.33□□□□□ -0.76
RNF4-221ENST00000513643 TATDN2Q93075 761 aa10.33□□□□□ -0.76
RNF4-221ENST00000513643 TNIP3Q96KP6 325 aa10.33□□□□□ -0.76
RNF4-221ENST00000513643 HNRNPABQ99729 332 aaKnown RBP10.33□□□□□ -0.76
RNF4-221ENST00000513643 DLGAP2Q9P1A6 1054 aa10.33□□□□□ -0.76
RNF4-221ENST00000513643 UXTQ9UBK9 157 aaPredicted RBP10.33□□□□□ -0.76
RNF4-221ENST00000513643 RAPGEFL1Q9UHV5 662 aa10.33□□□□□ -0.76
RNF4-221ENST00000513643 ZNF840PA6NDX5 716 aa10.32□□□□□ -0.76
RNF4-221ENST00000513643 HEPACAM2A8MVW5 462 aa10.32□□□□□ -0.76
RNF4-221ENST00000513643 HHLA1C9JL84 531 aa10.32□□□□□ -0.76
RNF4-221ENST00000513643 CHADO15335 359 aa10.32□□□□□ -0.76
RNF4-221ENST00000513643 PI15O43692 258 aa10.32□□□□□ -0.76
RNF4-221ENST00000513643 OLFM2O95897 454 aa10.32□□□□□ -0.76
RNF4-221ENST00000513643 ZDHHC11BP0C7U3 371 aa10.32□□□□□ -0.76
RNF4-221ENST00000513643 TCF3P15923 654 aa10.32□□□□□ -0.76
RNF4-221ENST00000513643 PFKLP17858 780 aa10.32□□□□□ -0.76
RNF4-221ENST00000513643 GRIK1P39086 918 aa10.32□□□□□ -0.76
RNF4-221ENST00000513643 CYP4F8P98187 520 aa10.32□□□□□ -0.76
RNF4-221ENST00000513643 PFKPQ01813 784 aa10.32□□□□□ -0.76
RNF4-221ENST00000513643 CYP27A1Q02318 531 aa10.32□□□□□ -0.76
RNF4-221ENST00000513643 PRKCQQ04759 706 aa10.32□□□□□ -0.76
RNF4-221ENST00000513643 FZD5Q13467 585 aa10.32□□□□□ -0.76
RNF4-221ENST00000513643 CT47A1Q5JQC4 288 aaPredicted RBP10.32□□□□□ -0.76
RNF4-221ENST00000513643 GPR158Q5T848 1215 aa10.32□□□□□ -0.76
RNF4-221ENST00000513643 SCARA5Q6ZMJ2 495 aa10.32□□□□□ -0.76
RNF4-221ENST00000513643 DENND5BQ6ZUT9 1274 aa10.32□□□□□ -0.76
RNF4-221ENST00000513643 FAM35AQ86V20 835 aa10.32□□□□□ -0.76
RNF4-221ENST00000513643 SIX5Q8N196 739 aa10.32□□□□□ -0.76
RNF4-221ENST00000513643 TTC39CQ8N584 583 aa10.32□□□□□ -0.76
RNF4-221ENST00000513643 C12orf29Q8N999 325 aa10.32□□□□□ -0.76
RNF4-221ENST00000513643 RIN3Q8TB24 985 aa10.32□□□□□ -0.76
RNF4-221ENST00000513643 FAM200AQ8TCP9 573 aa10.32□□□□□ -0.76
RNF4-221ENST00000513643 DNASE1L2Q92874 299 aa10.32□□□□□ -0.76
RNF4-221ENST00000513643 KCNK16Q96T55 309 aa10.32□□□□□ -0.76
RNF4-221ENST00000513643 SMOQ99835 787 aa10.32□□□□□ -0.76
RNF4-221ENST00000513643 ARID3AQ99856 593 aa10.32□□□□□ -0.76
RNF4-221ENST00000513643 TRMT61BQ9BVS5 477 aaKnown RBP10.32□□□□□ -0.76
RNF4-221ENST00000513643 NT5C1AQ9BXI3 368 aa10.32□□□□□ -0.76
RNF4-221ENST00000513643 SRRTQ9BXP5 876 aaKnown RBP10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms