RNA–Protein interactions for RNA: ENST00000513346.5

TCOF1-211, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-211ENST00000513346 CCDC80Q76M96 950 aa11.71□□□□□ -0.54
TCOF1-211ENST00000513346 VGLL2Q8N8G2 317 aa11.71□□□□□ -0.54
TCOF1-211ENST00000513346 ITFG2Q969R8 447 aa11.71□□□□□ -0.54
TCOF1-211ENST00000513346 PAIP1Q9H074 479 aaKnown RBP11.71□□□□□ -0.54
TCOF1-211ENST00000513346 HSPBP1Q9NZL4 362 aa11.71□□□□□ -0.54
TCOF1-211ENST00000513346 IPO11Q9UI26 975 aaKnown RBP11.71□□□□□ -0.54
TCOF1-211ENST00000513346 HNRNPRO43390 633 aaKnown RBP11.71□□□□□ -0.54
TCOF1-211ENST00000513346 DDNO94850 711 aaPredicted RBP11.71□□□□□ -0.54
TCOF1-211ENST00000513346 CASP4P49662 377 aa11.71□□□□□ -0.54
TCOF1-211ENST00000513346 GPC3P51654 580 aa11.71□□□□□ -0.54
TCOF1-211ENST00000513346 CHN2P52757 468 aa11.71□□□□□ -0.54
TCOF1-211ENST00000513346 TRIM74Q86UV6 250 aa11.71□□□□□ -0.54
TCOF1-211ENST00000513346 TRIM73Q86UV7 250 aa11.71□□□□□ -0.54
TCOF1-211ENST00000513346 BEST2Q8NFU1 509 aa11.71□□□□□ -0.54
TCOF1-211ENST00000513346 TCP10LQ8TDR4 215 aa11.71□□□□□ -0.54
TCOF1-211ENST00000513346 PCYOX1Q9UHG3 505 aa11.71□□□□□ -0.54
TCOF1-211ENST00000513346 PPP2R3BQ9Y5P8 575 aa11.71□□□□□ -0.54
TCOF1-211ENST00000513346 DCDC2CA8MYV0 355 aa11.7□□□□□ -0.54
TCOF1-211ENST00000513346 SLC37A4O43826 429 aa11.7□□□□□ -0.54
TCOF1-211ENST00000513346 TCN1P20061 433 aaPredicted RBP11.7□□□□□ -0.54
TCOF1-211ENST00000513346 XPAP23025 273 aaPredicted RBP11.7□□□□□ -0.54
TCOF1-211ENST00000513346 YWHABP31946 246 aaKnown RBP11.7□□□□□ -0.54
TCOF1-211ENST00000513346 MLH1P40692 756 aa11.7□□□□□ -0.54
TCOF1-211ENST00000513346 RPL5P46777 297 aaKnown RBP11.7□□□□□ -0.54
TCOF1-211ENST00000513346 NUDT2P50583 147 aa11.7□□□□□ -0.54
TCOF1-211ENST00000513346 ZNF572Q7Z3I7 529 aaPredicted RBP11.7□□□□□ -0.54
TCOF1-211ENST00000513346 PIGWQ7Z7B1 504 aa11.7□□□□□ -0.54
TCOF1-211ENST00000513346 ZNF786Q8N393 782 aa11.7□□□□□ -0.54
TCOF1-211ENST00000513346 CYGBQ8WWM9 190 aa11.7□□□□□ -0.54
TCOF1-211ENST00000513346 RTFDC1Q9BY42 306 aaPredicted RBP11.7□□□□□ -0.54
TCOF1-211ENST00000513346 KLHL25Q9H0H3 589 aa11.7□□□□□ -0.54
TCOF1-211ENST00000513346 PCDHB2Q9Y5E7 798 aa11.7□□□□□ -0.54
TCOF1-211ENST00000513346 H0Y626 953 aa11.7□□□□□ -0.54
TCOF1-211ENST00000513346 PSTPIP1O43586 416 aa11.7□□□□□ -0.54
TCOF1-211ENST00000513346 AKAP3O75969 853 aa11.7□□□□□ -0.54
TCOF1-211ENST00000513346 TRIM16O95361 564 aa11.7□□□□□ -0.54
TCOF1-211ENST00000513346 PRKCIP41743 596 aa11.7□□□□□ -0.54
TCOF1-211ENST00000513346 CDKL3Q8IVW4 592 aaPredicted RBP11.7□□□□□ -0.54
TCOF1-211ENST00000513346 FITM2Q8N6M3 262 aa11.7□□□□□ -0.54
TCOF1-211ENST00000513346 ADNPQ9H2P0 1102 aa11.7□□□□□ -0.54
TCOF1-211ENST00000513346 SUN2Q9UH99 717 aa11.7□□□□□ -0.54
TCOF1-211ENST00000513346 SLC12A4Q9UP95 1085 aa11.7□□□□□ -0.54
TCOF1-211ENST00000513346 POLRMTO00411 1230 aaKnown RBP11.7□□□□□ -0.54
TCOF1-211ENST00000513346 APRTP07741 180 aa11.7□□□□□ -0.54
TCOF1-211ENST00000513346 THRAP10827 490 aa11.7□□□□□ -0.54
TCOF1-211ENST00000513346 CDH6P55285 790 aa11.7□□□□□ -0.54
TCOF1-211ENST00000513346 KCTD21Q4G0X4 260 aa11.7□□□□□ -0.54
TCOF1-211ENST00000513346 ELMSAN1Q6PJG2 1045 aa11.7□□□□□ -0.54
TCOF1-211ENST00000513346 TSHZ1Q6ZSZ6 1077 aa11.7□□□□□ -0.54
TCOF1-211ENST00000513346 NET1Q7Z628 596 aaPredicted RBP11.7□□□□□ -0.54
TCOF1-211ENST00000513346 ADCK1Q86TW2 530 aa11.7□□□□□ -0.54
TCOF1-211ENST00000513346 TERB1Q8NA31 727 aa11.7□□□□□ -0.54
TCOF1-211ENST00000513346 FBXO36Q8NEA4 188 aa11.7□□□□□ -0.54
TCOF1-211ENST00000513346 TLCD1Q96CP7 247 aa11.7□□□□□ -0.54
TCOF1-211ENST00000513346 ECSITQ9BQ95 431 aa11.7□□□□□ -0.54
TCOF1-211ENST00000513346 ZBED2Q9BTP6 218 aa11.7□□□□□ -0.54
TCOF1-211ENST00000513346 ARMCX1Q9P291 453 aa11.7□□□□□ -0.54
TCOF1-211ENST00000513346 KLHL33A6NCF5 533 aa11.69□□□□□ -0.54
TCOF1-211ENST00000513346 ETS2P15036 469 aa11.69□□□□□ -0.54
TCOF1-211ENST00000513346 VAV1P15498 845 aa11.69□□□□□ -0.54
TCOF1-211ENST00000513346 PIGHQ14442 188 aaPredicted RBP11.69□□□□□ -0.54
TCOF1-211ENST00000513346 XKR3Q5GH77 459 aa11.69□□□□□ -0.54
TCOF1-211ENST00000513346 RNF149Q8NC42 400 aa11.69□□□□□ -0.54
TCOF1-211ENST00000513346 DACT3Q96B18 629 aaPredicted RBP11.69□□□□□ -0.54
TCOF1-211ENST00000513346 RMI1Q9H9A7 625 aa11.69□□□□□ -0.54
TCOF1-211ENST00000513346 FANCGO15287 622 aa11.69□□□□□ -0.54
TCOF1-211ENST00000513346 PLOD1Q02809 727 aaPredicted RBP11.69□□□□□ -0.54
TCOF1-211ENST00000513346 PDK4Q16654 411 aa11.69□□□□□ -0.54
TCOF1-211ENST00000513346 TKFCQ3LXA3 575 aa11.69□□□□□ -0.54
TCOF1-211ENST00000513346 ARL13BQ3SXY8 428 aa11.69□□□□□ -0.54
TCOF1-211ENST00000513346 SYCP2LQ5T4T6 812 aa11.69□□□□□ -0.54
TCOF1-211ENST00000513346 C6orf89Q6UWU4 347 aa11.69□□□□□ -0.54
TCOF1-211ENST00000513346 RYBPQ8N488 228 aaPredicted RBP11.69□□□□□ -0.54
TCOF1-211ENST00000513346 PPP1R36Q96LQ0 422 aa11.69□□□□□ -0.54
TCOF1-211ENST00000513346 FRMD8Q9BZ67 464 aaPredicted RBP11.69□□□□□ -0.54
TCOF1-211ENST00000513346 UTP6Q9NYH9 597 aaKnown RBP11.69□□□□□ -0.54
TCOF1-211ENST00000513346 RBAKQ9NYW8 714 aaPredicted RBP11.69□□□□□ -0.54
TCOF1-211ENST00000513346 AGO2Q9UKV8 859 aaKnown RBP11.69□□□□□ -0.54
TCOF1-211ENST00000513346 E2F6O75461 281 aa11.69□□□□□ -0.54
TCOF1-211ENST00000513346 DGAT1O75907 488 aa11.69□□□□□ -0.54
TCOF1-211ENST00000513346 LCA5LO95447 670 aa11.69□□□□□ -0.54
TCOF1-211ENST00000513346 SGPL1O95470 568 aa11.69□□□□□ -0.54
TCOF1-211ENST00000513346 OCM2P0CE71 109 aa11.69□□□□□ -0.54
TCOF1-211ENST00000513346 OCMP0CE72 109 aaPredicted RBP11.69□□□□□ -0.54
TCOF1-211ENST00000513346 ANPEPP15144 967 aa11.69□□□□□ -0.54
TCOF1-211ENST00000513346 EIF2B2P49770 351 aaKnown RBP11.69□□□□□ -0.54
TCOF1-211ENST00000513346 HEATR6Q6AI08 1181 aaKnown RBP11.69□□□□□ -0.54
TCOF1-211ENST00000513346 DEFB107AQ8IZN7 70 aa11.69□□□□□ -0.54
TCOF1-211ENST00000513346 THEM5Q8N1Q8 247 aa11.69□□□□□ -0.54
TCOF1-211ENST00000513346 SLC5A5Q92911 643 aa11.69□□□□□ -0.54
TCOF1-211ENST00000513346 DCLK3Q9C098 648 aa11.69□□□□□ -0.54
TCOF1-211ENST00000513346 MTIF3Q9H2K0 278 aaKnown RBP11.69□□□□□ -0.54
TCOF1-211ENST00000513346 MRGBPQ9NV56 204 aa11.69□□□□□ -0.54
TCOF1-211ENST00000513346 CST8O60676 142 aa11.69□□□□□ -0.54
TCOF1-211ENST00000513346 YY1P25490 414 aa11.69□□□□□ -0.54
TCOF1-211ENST00000513346 PPP1R15BQ5SWA1 713 aa11.69□□□□□ -0.54
TCOF1-211ENST00000513346 PLEKHA7Q6IQ23 1121 aa11.69□□□□□ -0.54
TCOF1-211ENST00000513346 MTHFD1LQ6UB35 978 aa11.69□□□□□ -0.54
TCOF1-211ENST00000513346 CDR2LQ86X02 465 aaPredicted RBP11.69□□□□□ -0.54
TCOF1-211ENST00000513346 KCTD17Q8N5Z5 321 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms