RNA–Protein interactions for RNA: ENST00000508583.5

NUP54-207, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 521 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-207ENST00000508583 CYFIP2Q96F07 1278 aa9.7□□□□□ -0.86
NUP54-207ENST00000508583 TRMT2BQ96GJ1 504 aaKnown RBP9.7□□□□□ -0.86
NUP54-207ENST00000508583 RPGRIP1Q96KN7 1286 aa9.7□□□□□ -0.86
NUP54-207ENST00000508583 HNRNPABQ99729 332 aaKnown RBP9.7□□□□□ -0.86
NUP54-207ENST00000508583 ARID3AQ99856 593 aa9.7□□□□□ -0.86
NUP54-207ENST00000508583 CRACR2AQ9BSW2 395 aa9.7□□□□□ -0.86
NUP54-207ENST00000508583 CRISPLD1Q9H336 500 aa9.7□□□□□ -0.86
NUP54-207ENST00000508583 TSPY26PQ9H489 355 aa9.7□□□□□ -0.86
NUP54-207ENST00000508583 PNPLA8Q9NP80 782 aa9.7□□□□□ -0.86
NUP54-207ENST00000508583 UBE2TQ9NPD8 197 aaPredicted RBP9.7□□□□□ -0.86
NUP54-207ENST00000508583 KRT82Q9NSB4 513 aa9.7□□□□□ -0.86
NUP54-207ENST00000508583 TMLHEQ9NVH6 421 aa9.7□□□□□ -0.86
NUP54-207ENST00000508583 COMMD8Q9NX08 183 aa9.7□□□□□ -0.86
NUP54-207ENST00000508583 TAB2Q9NYJ8 693 aa9.7□□□□□ -0.86
NUP54-207ENST00000508583 DNMT3BQ9UBC3 853 aaKnown RBP9.7□□□□□ -0.86
NUP54-207ENST00000508583 HESX1Q9UBX0 185 aa9.7□□□□□ -0.86
NUP54-207ENST00000508583 PCDHB4Q9Y5E5 795 aa9.7□□□□□ -0.86
NUP54-207ENST00000508583 DENND4AQ7Z401 1863 aa9.7□□□□□ -0.86
NUP54-207ENST00000508583 SOBPA7XYQ1 873 aa9.69□□□□□ -0.86
NUP54-207ENST00000508583 NCOR1O75376 2440 aa9.69□□□□□ -0.86
NUP54-207ENST00000508583 AP1G2O75843 785 aa9.69□□□□□ -0.86
NUP54-207ENST00000508583 VNN2O95498 520 aa9.69□□□□□ -0.86
NUP54-207ENST00000508583 SERPINC1P01008 464 aa9.69□□□□□ -0.86
NUP54-207ENST00000508583 VDRP11473 427 aa9.69□□□□□ -0.86
NUP54-207ENST00000508583 KRT5P13647 590 aa9.69□□□□□ -0.86
NUP54-207ENST00000508583 CD19P15391 556 aa9.69□□□□□ -0.86
NUP54-207ENST00000508583 ATF6P18850 670 aa9.69□□□□□ -0.86
NUP54-207ENST00000508583 PTPRDP23468 1912 aa9.69□□□□□ -0.86
NUP54-207ENST00000508583 GBP2P32456 591 aaPredicted RBP9.69□□□□□ -0.86
NUP54-207ENST00000508583 MYH10P35580 1976 aa9.69□□□□□ -0.86
NUP54-207ENST00000508583 COPB1P53618 953 aaKnown RBP9.69□□□□□ -0.86
NUP54-207ENST00000508583 RAD23BP54727 409 aa9.69□□□□□ -0.86
NUP54-207ENST00000508583 BPIFB4P59827 614 aa9.69□□□□□ -0.86
NUP54-207ENST00000508583 UBXN1Q04323 297 aa9.69□□□□□ -0.86
NUP54-207ENST00000508583 NCAPHQ15003 741 aa9.69□□□□□ -0.86
NUP54-207ENST00000508583 ZNF394Q53GI3 561 aa9.69□□□□□ -0.86
NUP54-207ENST00000508583 ARHGAP17Q68EM7 881 aa9.69□□□□□ -0.86
NUP54-207ENST00000508583 PHLDB3Q6NSJ2 640 aa9.69□□□□□ -0.86
NUP54-207ENST00000508583 LRSAM1Q6UWE0 723 aa9.69□□□□□ -0.86
NUP54-207ENST00000508583 DENND5BQ6ZUT9 1274 aa9.69□□□□□ -0.86
NUP54-207ENST00000508583 MTSS1LQ765P7 747 aa9.69□□□□□ -0.86
NUP54-207ENST00000508583 RRAGAQ7L523 313 aa9.69□□□□□ -0.86
NUP54-207ENST00000508583 ZDHHC14Q8IZN3 488 aa9.69□□□□□ -0.86
NUP54-207ENST00000508583 FUKQ8N0W3 1084 aa9.69□□□□□ -0.86
NUP54-207ENST00000508583 TTC9BQ8N6N2 239 aa9.69□□□□□ -0.86
NUP54-207ENST00000508583 PDZD8Q8NEN9 1154 aa9.69□□□□□ -0.86
NUP54-207ENST00000508583 SLC2A14Q8TDB8 520 aa9.69□□□□□ -0.86
NUP54-207ENST00000508583 MYRFLQ96LU7 910 aa9.69□□□□□ -0.86
NUP54-207ENST00000508583 PCMTD1Q96MG8 357 aaPredicted RBP9.69□□□□□ -0.86
NUP54-207ENST00000508583 NECAB3Q96P71 396 aaPredicted RBP9.69□□□□□ -0.86
NUP54-207ENST00000508583 SLITRK1Q96PX8 696 aa9.69□□□□□ -0.86
NUP54-207ENST00000508583 B3GNT5Q9BYG0 378 aa9.69□□□□□ -0.86
NUP54-207ENST00000508583 VPS16Q9H269 839 aa9.69□□□□□ -0.86
NUP54-207ENST00000508583 FBXO44Q9H4M3 255 aa9.69□□□□□ -0.86
NUP54-207ENST00000508583 PLCB1Q9NQ66 1216 aa9.69□□□□□ -0.86
NUP54-207ENST00000508583 FAM49BQ9NUQ9 324 aa9.69□□□□□ -0.86
NUP54-207ENST00000508583 CEP72Q9P209 647 aa9.69□□□□□ -0.86
NUP54-207ENST00000508583 EPS15L1Q9UBC2 864 aa9.69□□□□□ -0.86
NUP54-207ENST00000508583 HMGXB4Q9UGU5 601 aa9.69□□□□□ -0.86
NUP54-207ENST00000508583 CDH7Q9ULB5 785 aa9.69□□□□□ -0.86
NUP54-207ENST00000508583 TCF20Q9UGU0 1960 aaKnown RBP9.68□□□□□ -0.86
NUP54-207ENST00000508583 SLC38A8A6NNN8 435 aa9.68□□□□□ -0.86
NUP54-207ENST00000508583 LOC730098B7Z3J9 87 aa9.68□□□□□ -0.86
NUP54-207ENST00000508583 F8VP50 259 aa9.68□□□□□ -0.86
NUP54-207ENST00000508583 HCRTO43612 131 aa9.68□□□□□ -0.86
NUP54-207ENST00000508583 NOL4O94818 638 aa9.68□□□□□ -0.86
NUP54-207ENST00000508583 SETSIPP0DME0 302 aa9.68□□□□□ -0.86
NUP54-207ENST00000508583 MYL4P12829 197 aa9.68□□□□□ -0.86
NUP54-207ENST00000508583 CCDC130P13994 396 aa9.68□□□□□ -0.86
NUP54-207ENST00000508583 NPR3P17342 541 aa9.68□□□□□ -0.86
NUP54-207ENST00000508583 PFKLP17858 780 aa9.68□□□□□ -0.86
NUP54-207ENST00000508583 SLC9A1P19634 815 aa9.68□□□□□ -0.86
NUP54-207ENST00000508583 BCAT1P54687 386 aa9.68□□□□□ -0.86
NUP54-207ENST00000508583 PTK2Q05397 1052 aa9.68□□□□□ -0.86
NUP54-207ENST00000508583 IQCB1Q15051 598 aa9.68□□□□□ -0.86
NUP54-207ENST00000508583 MEA1Q16626 185 aa9.68□□□□□ -0.86
NUP54-207ENST00000508583 DDR2Q16832 855 aa9.68□□□□□ -0.86
NUP54-207ENST00000508583 GJD3Q8N144 294 aa9.68□□□□□ -0.86
NUP54-207ENST00000508583 NUP93Q8N1F7 819 aa9.68□□□□□ -0.86
NUP54-207ENST00000508583 C12orf29Q8N999 325 aa9.68□□□□□ -0.86
NUP54-207ENST00000508583 SLC4A11Q8NBS3 891 aa9.68□□□□□ -0.86
NUP54-207ENST00000508583 RBBP8NLQ8NC74 664 aaPredicted RBP9.68□□□□□ -0.86
NUP54-207ENST00000508583 WHAMMQ8TF30 809 aa9.68□□□□□ -0.86
NUP54-207ENST00000508583 GIPC2Q8TF65 315 aa9.68□□□□□ -0.86
NUP54-207ENST00000508583 OVCA2Q8WZ82 227 aa9.68□□□□□ -0.86
NUP54-207ENST00000508583 MRPS31Q92665 395 aaKnown RBP9.68□□□□□ -0.86
NUP54-207ENST00000508583 E2F7Q96AV8 911 aa9.68□□□□□ -0.86
NUP54-207ENST00000508583 ELMO3Q96BJ8 720 aa9.68□□□□□ -0.86
NUP54-207ENST00000508583 LPIN3Q9BQK8 851 aa9.68□□□□□ -0.86
NUP54-207ENST00000508583 DUSP16Q9BY84 665 aa9.68□□□□□ -0.86
NUP54-207ENST00000508583 ZNF518BQ9C0D4 1074 aa9.68□□□□□ -0.86
NUP54-207ENST00000508583 SLITRK6Q9H5Y7 841 aa9.68□□□□□ -0.86
NUP54-207ENST00000508583 CBX8Q9HC52 389 aa9.68□□□□□ -0.86
NUP54-207ENST00000508583 CSNK1G1Q9HCP0 422 aa9.68□□□□□ -0.86
NUP54-207ENST00000508583 HCFC1R1Q9NWW0 138 aa9.68□□□□□ -0.86
NUP54-207ENST00000508583 IGSF9Q9P2J2 1179 aa9.68□□□□□ -0.86
NUP54-207ENST00000508583 MAGED2Q9UNF1 606 aaPredicted RBP9.68□□□□□ -0.86
NUP54-207ENST00000508583 CNTN6Q9UQ52 1028 aa9.68□□□□□ -0.86
NUP54-207ENST00000508583 NCANO14594 1321 aa9.67□□□□□ -0.86
NUP54-207ENST00000508583 C2CD4DB7Z1M9 353 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms