RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 TTC36A6NLP5 189 aa16.89■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 SGK1O00141 431 aa16.89■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 PDHXO00330 501 aa16.89■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 IL1R2P27930 398 aa16.89■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 RFC1P35251 1148 aaPredicted RBP16.89■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 SKIV2L2P42285 1042 aaKnown RBP16.89■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 ASPAP45381 313 aa16.89■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 GDF10P55107 478 aa16.89■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 PDK4Q16654 411 aa16.89■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 EFHC2Q5JST6 749 aa16.89■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 ANKRD22Q5VYY1 191 aa16.89■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 KIAA0319LQ8IZA0 1049 aa16.89■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 JOSD2Q8TAC2 188 aa16.89■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 STAMBPL1Q96FJ0 436 aa16.89■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 MAK16Q9BXY0 300 aaKnown RBP16.89■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 MRPL4Q9BYD3 311 aaKnown RBP16.89■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 XYLT2Q9H1B5 865 aa16.89■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 HOXC10Q9NYD6 342 aa16.89■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 SLC24A2Q9UI40 661 aa16.89■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 CYTH4Q9UIA0 394 aa16.89■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 CPSF3Q9UKF6 684 aaKnown RBP16.89■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 L3MBTL1Q9Y468 752 aa16.89■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 IFNB1P01574 187 aa16.89■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 HOXC6P09630 235 aa16.89■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 KRT15P19012 456 aa16.89■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 PLCB3Q01970 1234 aa16.89■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 DUOXA2Q1HG44 320 aa16.89■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 PTPN20Q4JDL3 420 aa16.89■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 MSS51Q4VC12 460 aa16.89■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 SCARA5Q6ZMJ2 495 aa16.89■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 POLNQ7Z5Q5 900 aa16.89■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 ANKMY2Q8IV38 441 aa16.89■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 ITFG2Q969R8 447 aa16.89■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 THOC1Q96FV9 657 aaKnown RBP16.89■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 SMC6Q96SB8 1091 aa16.89■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 WDR83Q9BRX9 315 aaKnown RBP16.89■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 TCHPQ9BT92 498 aa16.89■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 MYLK2Q9H1R3 596 aa16.89■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 SENP1Q9P0U3 644 aa16.89■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 RABGEF1Q9UJ41 708 aa16.89■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 DOCK3Q8IZD9 2030 aa16.88■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 GOLGA8SH3BPF8 625 aa16.88■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 GOLGA8MH3BSY2 632 aa16.88■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 OGTO15294 1046 aa16.88■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 UNC5CO95185 931 aa16.88■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 FGFR1P11362 822 aa16.88■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 STAT5BP51692 787 aa16.88■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 OTUD4Q01804 1114 aaKnown RBP16.88■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 TAZQ16635 292 aa16.88■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 SH3D19Q5HYK7 790 aa16.88■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 FNBP1LQ5T0N5 605 aa16.88■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 CDCA2Q69YH5 1023 aaPredicted RBP16.88■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 ACTL9Q8TC94 416 aa16.88■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 CPT1BQ92523 772 aa16.88■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 MRRFQ96E11 262 aaKnown RBP16.88■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 ADAM33Q9BZ11 813 aa16.88■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 ZMYND8Q9ULU4 1186 aaPredicted RBP16.88■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 CHKBQ9Y259 395 aa16.88■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 EFR3BQ9Y2G0 817 aa16.88■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 CXCL11O14625 94 aa16.88■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 EDF1O60869 148 aaKnown RBP16.88■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 LRCH4O75427 683 aa16.88■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 SLC10A3P09131 477 aa16.88■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 MSH2P43246 934 aa16.88■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 EFNA5P52803 228 aa16.88■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 YARSP54577 528 aaKnown RBP16.88■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 DYNLT1P63172 113 aa16.88■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 EFTUD2Q15029 972 aaKnown RBP eCLIP16.88■□□□□ 0.293e-11■■■■□ 23
MSH5-SAPCD1-208ENST00000498473 SMTNL2Q2TAL5 461 aa16.88■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 DEFB115Q30KQ5 88 aa16.88■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 NAT8LQ8N9F0 302 aa16.88■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 UTP4Q969X6 686 aaKnown RBP16.88■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 CAPNS2Q96L46 248 aa16.88■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 PPCSQ9HAB8 311 aa16.88■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 BTBD7Q9P203 1132 aa16.88■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 PSMC3IPQ9P2W1 217 aaPredicted RBP16.88■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 AGTPBP1Q9UPW5 1226 aa16.88■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 SIGLEC16A6NMB1 481 aa16.87■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 PSMA2P25787 234 aa16.87■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 CTCFP49711 727 aaPredicted RBP16.87■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 HIF1AQ16665 826 aa16.87■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 Q3C1V9 767 aa16.87■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 KCNT1Q5JUK3 1230 aa16.87■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 CHST13Q8NET6 341 aa16.87■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 ZWILCHQ9H900 591 aa16.87■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 POLIQ9UNA4 740 aa16.87■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 STK38LQ9Y2H1 464 aa16.87■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 CST8O60676 142 aa16.86■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 SRGAP2CP0DJJ0 459 aa16.86■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 CA4P22748 312 aa16.86■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 SSTR1P30872 391 aa16.86■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 RPL22P35268 128 aaKnown RBP16.86■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 GTF2A2P52657 109 aa16.86■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 TRPC3Q13507 836 aa16.86■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 TFDP1Q14186 410 aa16.86■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 CRYMQ14894 314 aa16.86■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 ZNF699Q32M78 642 aa16.86■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 BBS12Q6ZW61 710 aa16.86■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 PCGF5Q86SE9 256 aa16.86■□□□□ 0.29
MSH5-SAPCD1-208ENST00000498473 PPIL6Q8IXY8 311 aa16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms