RNA–Protein interactions for RNA: ENST00000498259.1

SF3A1-210, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 875 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-210ENST00000498259 UBA3Q8TBC4 463 aa8.9□□□□□ -0.98
SF3A1-210ENST00000498259 SLC2A14Q8TDB8 520 aa8.9□□□□□ -0.98
SF3A1-210ENST00000498259 MCRS1Q96EZ8 462 aa8.9□□□□□ -0.98
SF3A1-210ENST00000498259 RBM41Q96IZ5 413 aaKnown RBP8.9□□□□□ -0.98
SF3A1-210ENST00000498259 MCEEQ96PE7 176 aa8.9□□□□□ -0.98
SF3A1-210ENST00000498259 SLC4A5Q9BY07 1137 aa8.9□□□□□ -0.98
SF3A1-210ENST00000498259 CXCL16Q9H2A7 254 aa8.9□□□□□ -0.98
SF3A1-210ENST00000498259 MTIF3Q9H2K0 278 aaKnown RBP8.9□□□□□ -0.98
SF3A1-210ENST00000498259 PNPLA8Q9NP80 782 aa8.9□□□□□ -0.98
SF3A1-210ENST00000498259 PRDM5Q9NQX1 630 aaPredicted RBP8.9□□□□□ -0.98
SF3A1-210ENST00000498259 FAM49BQ9NUQ9 324 aa8.9□□□□□ -0.98
SF3A1-210ENST00000498259 RRN3Q9NYV6 651 aa8.9□□□□□ -0.98
SF3A1-210ENST00000498259 EHD2Q9NZN4 543 aa8.9□□□□□ -0.98
SF3A1-210ENST00000498259 HMGXB4Q9UGU5 601 aa8.9□□□□□ -0.98
SF3A1-210ENST00000498259 ADAM28Q9UKQ2 775 aa8.9□□□□□ -0.98
SF3A1-210ENST00000498259 TARSL2A2RTX5 802 aaKnown RBP8.89□□□□□ -0.99
SF3A1-210ENST00000498259 TBKBP1A7MCY6 615 aa8.89□□□□□ -0.99
SF3A1-210ENST00000498259 GOLGA8SH3BPF8 625 aa8.89□□□□□ -0.99
SF3A1-210ENST00000498259 KRIT1O00522 736 aa8.89□□□□□ -0.99
SF3A1-210ENST00000498259 ATMINO43313 823 aaPredicted RBP8.89□□□□□ -0.99
SF3A1-210ENST00000498259 HSF2BPO75031 334 aa8.89□□□□□ -0.99
SF3A1-210ENST00000498259 SRGAP2O75044 1071 aa8.89□□□□□ -0.99
SF3A1-210ENST00000498259 TADA3O75528 432 aa8.89□□□□□ -0.99
SF3A1-210ENST00000498259 FGFR1P11362 822 aa8.89□□□□□ -0.99
SF3A1-210ENST00000498259 GPD1P21695 349 aa8.89□□□□□ -0.99
SF3A1-210ENST00000498259 PSMA2P25787 234 aa8.89□□□□□ -0.99
SF3A1-210ENST00000498259 LMO2P25791 158 aa8.89□□□□□ -0.99
SF3A1-210ENST00000498259 ADORA2BP29275 332 aa8.89□□□□□ -0.99
SF3A1-210ENST00000498259 SDC4P31431 198 aa8.89□□□□□ -0.99
SF3A1-210ENST00000498259 CXCR5P32302 372 aa8.89□□□□□ -0.99
SF3A1-210ENST00000498259 PCK1P35558 622 aa8.89□□□□□ -0.99
SF3A1-210ENST00000498259 RPL34P49207 117 aaKnown RBP8.89□□□□□ -0.99
SF3A1-210ENST00000498259 MNX1P50219 401 aaPredicted RBP8.89□□□□□ -0.99
SF3A1-210ENST00000498259 DNA2P51530 1060 aa8.89□□□□□ -0.99
SF3A1-210ENST00000498259 ZNF143P52747 638 aaPredicted RBP8.89□□□□□ -0.99
SF3A1-210ENST00000498259 PDE4CQ08493 712 aa8.89□□□□□ -0.99
SF3A1-210ENST00000498259 ORC1Q13415 861 aa8.89□□□□□ -0.99
SF3A1-210ENST00000498259 PPIGQ13427 754 aaKnown RBP eCLIP8.89□□□□□ -0.99
SF3A1-210ENST00000498259 SMC1AQ14683 1233 aaKnown RBP8.89□□□□□ -0.99
SF3A1-210ENST00000498259 LONRF2Q1L5Z9 754 aa8.89□□□□□ -0.99
SF3A1-210ENST00000498259 PTPN20Q4JDL3 420 aa8.89□□□□□ -0.99
SF3A1-210ENST00000498259 PKDCCQ504Y2 493 aa8.89□□□□□ -0.99
SF3A1-210ENST00000498259 BOLA3Q53S33 107 aa8.89□□□□□ -0.99
SF3A1-210ENST00000498259 MDH1BQ5I0G3 518 aa8.89□□□□□ -0.99
SF3A1-210ENST00000498259 INTS6LQ5JSJ4 861 aaKnown RBP8.89□□□□□ -0.99
SF3A1-210ENST00000498259 TEX35Q5T0J7 233 aa8.89□□□□□ -0.99
SF3A1-210ENST00000498259 SCARA3Q6AZY7 606 aa8.89□□□□□ -0.99
SF3A1-210ENST00000498259 ZNF280DQ6N043 979 aa8.89□□□□□ -0.99
SF3A1-210ENST00000498259 ANKS3Q6ZW76 656 aa8.89□□□□□ -0.99
SF3A1-210ENST00000498259 XYLT1Q86Y38 959 aa8.89□□□□□ -0.99
SF3A1-210ENST00000498259 SPATA2LQ8IUW3 424 aaPredicted RBP8.89□□□□□ -0.99
SF3A1-210ENST00000498259 RASGEF1CQ8N431 466 aa8.89□□□□□ -0.99
SF3A1-210ENST00000498259 EXD1Q8NHP7 514 aa8.89□□□□□ -0.99
SF3A1-210ENST00000498259 C2orf15Q8WU43 125 aaKnown RBP8.89□□□□□ -0.99
SF3A1-210ENST00000498259 LINC01599Q8WXQ3 324 aa8.89□□□□□ -0.99
SF3A1-210ENST00000498259 SCLYQ96I15 445 aa8.89□□□□□ -0.99
SF3A1-210ENST00000498259 FUBP3Q96I24 572 aaKnown RBP eCLIP8.89□□□□□ -0.99
SF3A1-210ENST00000498259 RNPC3Q96LT9 517 aaKnown RBP8.89□□□□□ -0.99
SF3A1-210ENST00000498259 CEP295NLQ96MC4 621 aa8.89□□□□□ -0.99
SF3A1-210ENST00000498259 CASD1Q96PB1 797 aa8.89□□□□□ -0.99
SF3A1-210ENST00000498259 CPXM1Q96SM3 734 aa8.89□□□□□ -0.99
SF3A1-210ENST00000498259 CNPY3Q9BT09 278 aa8.89□□□□□ -0.99
SF3A1-210ENST00000498259 CNGB3Q9NQW8 809 aa8.89□□□□□ -0.99
SF3A1-210ENST00000498259 STAP1Q9ULZ2 295 aa8.89□□□□□ -0.99
SF3A1-210ENST00000498259 SSX2IPQ9Y2D8 614 aa8.89□□□□□ -0.99
SF3A1-210ENST00000498259 E5RJQ4 531 aa8.88□□□□□ -0.99
SF3A1-210ENST00000498259 NRP1O14786 923 aa8.88□□□□□ -0.99
SF3A1-210ENST00000498259 TRIM66O15016 1216 aa8.88□□□□□ -0.99
SF3A1-210ENST00000498259 FANCGO15287 622 aa8.88□□□□□ -0.99
SF3A1-210ENST00000498259 NCK2O43639 380 aa8.88□□□□□ -0.99
SF3A1-210ENST00000498259 AP1G2O75843 785 aa8.88□□□□□ -0.99
SF3A1-210ENST00000498259 TJP3O95049 919 aa8.88□□□□□ -0.99
SF3A1-210ENST00000498259 CALCAP01258 141 aa8.88□□□□□ -0.99
SF3A1-210ENST00000498259 CFHP08603 1231 aa8.88□□□□□ -0.99
SF3A1-210ENST00000498259 PDGFRAP16234 1089 aa8.88□□□□□ -0.99
SF3A1-210ENST00000498259 GBP1P32455 592 aa8.88□□□□□ -0.99
SF3A1-210ENST00000498259 SSTR3P32745 418 aaPredicted RBP8.88□□□□□ -0.99
SF3A1-210ENST00000498259 RDXP35241 583 aaKnown RBP8.88□□□□□ -0.99
SF3A1-210ENST00000498259 PPM1AP35813 382 aa8.88□□□□□ -0.99
SF3A1-210ENST00000498259 AFF1P51825 1210 aaKnown RBP8.88□□□□□ -0.99
SF3A1-210ENST00000498259 CREMQ03060 361 aa8.88□□□□□ -0.99
SF3A1-210ENST00000498259 LMNB2Q03252 620 aa8.88□□□□□ -0.99
SF3A1-210ENST00000498259 LRRC26Q2I0M4 334 aa8.88□□□□□ -0.99
SF3A1-210ENST00000498259 PPP1R15BQ5SWA1 713 aa8.88□□□□□ -0.99
SF3A1-210ENST00000498259 SPOUT1Q5T280 376 aaKnown RBP8.88□□□□□ -0.99
SF3A1-210ENST00000498259 CYP4A22Q5TCH4 519 aa8.88□□□□□ -0.99
SF3A1-210ENST00000498259 KIAA1841Q6NSI8 718 aa8.88□□□□□ -0.99
SF3A1-210ENST00000498259 C8orf74Q6P047 294 aa8.88□□□□□ -0.99
SF3A1-210ENST00000498259 PMF1Q6P1K2 205 aa8.88□□□□□ -0.99
SF3A1-210ENST00000498259 CC2D1AQ6P1N0 951 aaPredicted RBP8.88□□□□□ -0.99
SF3A1-210ENST00000498259 FAM171BQ6P995 826 aa8.88□□□□□ -0.99
SF3A1-210ENST00000498259 VSTM1Q6UX27 236 aa8.88□□□□□ -0.99
SF3A1-210ENST00000498259 RSRC2Q7L4I2 434 aaKnown RBP8.88□□□□□ -0.99
SF3A1-210ENST00000498259 SLC26A9Q7LBE3 791 aa8.88□□□□□ -0.99
SF3A1-210ENST00000498259 DNAAF5Q86Y56 855 aa8.88□□□□□ -0.99
SF3A1-210ENST00000498259 ZNF280BQ86YH2 543 aa8.88□□□□□ -0.99
SF3A1-210ENST00000498259 CCDC50Q8IVM0 306 aa8.88□□□□□ -0.99
SF3A1-210ENST00000498259 CMTR2Q8IYT2 770 aaKnown RBP8.88□□□□□ -0.99
SF3A1-210ENST00000498259 KATNAL2Q8IYT4 538 aa8.88□□□□□ -0.99
SF3A1-210ENST00000498259 FUKQ8N0W3 1084 aa8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms