RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 CSRNP2Q9H175 543 aa4.7□□□□□ -1.66
USP54-217ENST00000498213 MFSD1Q9H3U5 465 aa4.7□□□□□ -1.66
USP54-217ENST00000498213 SMOC2Q9H3U7 446 aa4.7□□□□□ -1.66
USP54-217ENST00000498213 SLITRK6Q9H5Y7 841 aa4.7□□□□□ -1.66
USP54-217ENST00000498213 AS3MTQ9HBK9 375 aa4.7□□□□□ -1.66
USP54-217ENST00000498213 POLR3BQ9NW08 1133 aaPredicted RBP4.7□□□□□ -1.66
USP54-217ENST00000498213 OXSMQ9NWU1 459 aa4.7□□□□□ -1.66
USP54-217ENST00000498213 PLA2G3Q9NZ20 509 aa4.7□□□□□ -1.66
USP54-217ENST00000498213 CTNNA3Q9UI47 895 aa4.7□□□□□ -1.66
USP54-217ENST00000498213 CD207Q9UJ71 328 aa4.7□□□□□ -1.66
USP54-217ENST00000498213 SPO11Q9Y5K1 396 aa4.7□□□□□ -1.66
USP54-217ENST00000498213 FRYQ5TBA9 3013 aa4.7□□□□□ -1.66
USP54-217ENST00000498213 COL4A4P53420 1690 aaPredicted RBP4.7□□□□□ -1.66
USP54-217ENST00000498213 TNKSO95271 1327 aa4.7□□□□□ -1.66
USP54-217ENST00000498213 HECTD1Q9ULT8 2610 aa4.69□□□□□ -1.66
USP54-217ENST00000498213 FRYLO94915 3013 aa4.69□□□□□ -1.66
USP54-217ENST00000498213 A0A1B0GUL7 405 aa4.69□□□□□ -1.66
USP54-217ENST00000498213 CAPN14A8MX76 684 aa4.69□□□□□ -1.66
USP54-217ENST00000498213 DAPK3O43293 454 aa4.69□□□□□ -1.66
USP54-217ENST00000498213 TBX10O75333 385 aa4.69□□□□□ -1.66
USP54-217ENST00000498213 PGK2P07205 417 aa4.69□□□□□ -1.66
USP54-217ENST00000498213 AKR1A1P14550 325 aa4.69□□□□□ -1.66
USP54-217ENST00000498213 SP100P23497 879 aaPredicted RBP4.69□□□□□ -1.66
USP54-217ENST00000498213 CD40P25942 277 aa4.69□□□□□ -1.66
USP54-217ENST00000498213 ICAM3P32942 547 aa4.69□□□□□ -1.66
USP54-217ENST00000498213 BPIFB4P59827 614 aa4.69□□□□□ -1.66
USP54-217ENST00000498213 DEFB103AP81534 67 aa4.69□□□□□ -1.66
USP54-217ENST00000498213 ATP2C1P98194 919 aaPredicted RBP4.69□□□□□ -1.66
USP54-217ENST00000498213 BEX3Q00994 111 aa4.69□□□□□ -1.66
USP54-217ENST00000498213 ADCY2Q08462 1091 aa4.69□□□□□ -1.66
USP54-217ENST00000498213 GPM6BQ13491 265 aa4.69□□□□□ -1.66
USP54-217ENST00000498213 RIN1Q13671 783 aa4.69□□□□□ -1.66
USP54-217ENST00000498213 MVPQ14764 893 aaKnown RBP4.69□□□□□ -1.66
USP54-217ENST00000498213 SHROOM1Q2M3G4 852 aaPredicted RBP4.69□□□□□ -1.66
USP54-217ENST00000498213 USP39Q53GS9 565 aaKnown RBP4.69□□□□□ -1.66
USP54-217ENST00000498213 CXCL17Q6UXB2 119 aa4.69□□□□□ -1.66
USP54-217ENST00000498213 LRRTM3Q86VH5 581 aa4.69□□□□□ -1.66
USP54-217ENST00000498213 PPM1KQ8N3J5 372 aa4.69□□□□□ -1.66
USP54-217ENST00000498213 RIN2Q8WYP3 895 aaPredicted RBP4.69□□□□□ -1.66
USP54-217ENST00000498213 ARHGAP45Q92619 1136 aa4.69□□□□□ -1.66
USP54-217ENST00000498213 NINJ1Q92982 152 aa4.69□□□□□ -1.66
USP54-217ENST00000498213 C16orf92Q96LL3 132 aa4.69□□□□□ -1.66
USP54-217ENST00000498213 WDR92Q96MX6 357 aa4.69□□□□□ -1.66
USP54-217ENST00000498213 RTKNQ9BST9 563 aa4.69□□□□□ -1.66
USP54-217ENST00000498213 ZNF747Q9BV97 191 aa4.69□□□□□ -1.66
USP54-217ENST00000498213 MOV10L1Q9BXT6 1211 aaKnown RBP4.69□□□□□ -1.66
USP54-217ENST00000498213 DDX4Q9NQI0 724 aaKnown RBP4.69□□□□□ -1.66
USP54-217ENST00000498213 THG1LQ9NWX6 298 aaKnown RBP4.69□□□□□ -1.66
USP54-217ENST00000498213 SLC5A4Q9NY91 659 aa4.69□□□□□ -1.66
USP54-217ENST00000498213 CTDP1Q9Y5B0 961 aaPredicted RBP4.69□□□□□ -1.66
USP54-217ENST00000498213 PTPRFP10586 1907 aa4.69□□□□□ -1.66
USP54-217ENST00000498213 TEP1Q99973 2627 aaKnown RBP4.68□□□□□ -1.66
USP54-217ENST00000498213 MYO7AQ13402 2215 aa4.68□□□□□ -1.66
USP54-217ENST00000498213 GPR75-ASB3A0A0A6YYF3 556 aa4.68□□□□□ -1.66
USP54-217ENST00000498213 TAF4O00268 1085 aa4.68□□□□□ -1.66
USP54-217ENST00000498213 STRNO43815 780 aa4.68□□□□□ -1.66
USP54-217ENST00000498213 BAG3O95817 575 aa4.68□□□□□ -1.66
USP54-217ENST00000498213 PFKMP08237 780 aa4.68□□□□□ -1.66
USP54-217ENST00000498213 ASNSP08243 561 aa4.68□□□□□ -1.66
USP54-217ENST00000498213 NCLP19338 710 aaKnown RBP4.68□□□□□ -1.66
USP54-217ENST00000498213 KPNA1P52294 538 aaPredicted RBP4.68□□□□□ -1.66
USP54-217ENST00000498213 PSMC6P62333 389 aa4.68□□□□□ -1.66
USP54-217ENST00000498213 OCRLQ01968 901 aa4.68□□□□□ -1.66
USP54-217ENST00000498213 HGFACQ04756 655 aa4.68□□□□□ -1.66
USP54-217ENST00000498213 HYAL1Q12794 435 aa4.68□□□□□ -1.66
USP54-217ENST00000498213 FOXL1Q12952 345 aa4.68□□□□□ -1.66
USP54-217ENST00000498213 MTX1Q13505 466 aa4.68□□□□□ -1.66
USP54-217ENST00000498213 ESRP1Q6NXG1 681 aaKnown RBP4.68□□□□□ -1.66
USP54-217ENST00000498213 RNF207Q6ZRF8 634 aa4.68□□□□□ -1.66
USP54-217ENST00000498213 G2E3Q7L622 706 aa4.68□□□□□ -1.66
USP54-217ENST00000498213 ADGRE4PQ86SQ3 457 aa4.68□□□□□ -1.66
USP54-217ENST00000498213 C11orf74Q86VG3 221 aa4.68□□□□□ -1.66
USP54-217ENST00000498213 FOXP4Q8IVH2 680 aaPredicted RBP4.68□□□□□ -1.66
USP54-217ENST00000498213 DHX37Q8IY37 1157 aaKnown RBP4.68□□□□□ -1.66
USP54-217ENST00000498213 AHI1Q8N157 1196 aa4.68□□□□□ -1.66
USP54-217ENST00000498213 NXPE1Q8N323 547 aa4.68□□□□□ -1.66
USP54-217ENST00000498213 ZNF808Q8N4W9 903 aaPredicted RBP4.68□□□□□ -1.66
USP54-217ENST00000498213 ANKRD53Q8N9V6 530 aa4.68□□□□□ -1.66
USP54-217ENST00000498213 PCSK9Q8NBP7 692 aaKnown RBP4.68□□□□□ -1.66
USP54-217ENST00000498213 RABGGTAQ92696 567 aa4.68□□□□□ -1.66
USP54-217ENST00000498213 TSR2Q969E8 191 aaKnown RBP4.68□□□□□ -1.66
USP54-217ENST00000498213 RPL10LQ96L21 214 aaKnown RBP4.68□□□□□ -1.66
USP54-217ENST00000498213 RAD9AQ99638 391 aa4.68□□□□□ -1.66
USP54-217ENST00000498213 FEZ1Q99689 392 aa4.68□□□□□ -1.66
USP54-217ENST00000498213 API5Q9BZZ5 524 aaKnown RBP4.68□□□□□ -1.66
USP54-217ENST00000498213 SLC6A15Q9H2J7 730 aa4.68□□□□□ -1.66
USP54-217ENST00000498213 POFUT1Q9H488 388 aa4.68□□□□□ -1.66
USP54-217ENST00000498213 NCDNQ9UBB6 729 aa4.68□□□□□ -1.66
USP54-217ENST00000498213 PI4KBQ9UBF8 816 aa4.68□□□□□ -1.66
USP54-217ENST00000498213 NRBP1Q9UHY1 535 aa4.68□□□□□ -1.66
USP54-217ENST00000498213 DNAI1Q9UI46 699 aa4.68□□□□□ -1.66
USP54-217ENST00000498213 RCAN3Q9UKA8 241 aa4.68□□□□□ -1.66
USP54-217ENST00000498213 ZHX1Q9UKY1 873 aaPredicted RBP4.68□□□□□ -1.66
USP54-217ENST00000498213 PLAAQ9Y263 795 aa4.68□□□□□ -1.66
USP54-217ENST00000498213 MRPL42Q9Y6G3 142 aaKnown RBP4.68□□□□□ -1.66
USP54-217ENST00000498213 PMS2P1A4D2B8 440 aa4.67□□□□□ -1.66
USP54-217ENST00000498213 SRRM3A6NNA2 597 aaPredicted RBP4.67□□□□□ -1.66
USP54-217ENST00000498213 ZNF891A8MT65 544 aaPredicted RBP4.67□□□□□ -1.66
USP54-217ENST00000498213 PRR5-ARHGAP8B1AHC4 643 aa4.67□□□□□ -1.66
USP54-217ENST00000498213 ADCY6O43306 1168 aa4.67□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms