RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 DNAJB2P25686 324 aa13.66□□□□□ -0.22
PTPRF-215ENST00000496447 AVPR1AP37288 418 aa13.66□□□□□ -0.22
PTPRF-215ENST00000496447 STX3Q13277 289 aa13.66□□□□□ -0.22
PTPRF-215ENST00000496447 ABHD8Q96I13 439 aa13.66□□□□□ -0.22
PTPRF-215ENST00000496447 DACH2Q96NX9 599 aa13.66□□□□□ -0.22
PTPRF-215ENST00000496447 GIMAP4Q9NUV9 329 aa13.66□□□□□ -0.22
PTPRF-215ENST00000496447 CAMSAP3Q9P1Y5 1249 aaPredicted RBP13.66□□□□□ -0.22
PTPRF-215ENST00000496447 CDV3Q9UKY7 258 aaKnown RBP13.66□□□□□ -0.22
PTPRF-215ENST00000496447 ADGRA2Q96PE1 1338 aa13.66□□□□□ -0.22
PTPRF-215ENST00000496447 MEGF6O75095 1541 aa13.66□□□□□ -0.22
PTPRF-215ENST00000496447 ADM5C9JUS6 153 aa13.66□□□□□ -0.22
PTPRF-215ENST00000496447 GARTP22102 1010 aa13.66□□□□□ -0.22
PTPRF-215ENST00000496447 CSE1LP55060 971 aaKnown RBP13.66□□□□□ -0.22
PTPRF-215ENST00000496447 MKRN4PQ13434 485 aaPredicted RBP13.66□□□□□ -0.22
PTPRF-215ENST00000496447 LONRF1Q17RB8 773 aa13.66□□□□□ -0.22
PTPRF-215ENST00000496447 ZNF669Q96BR6 464 aaPredicted RBP13.66□□□□□ -0.22
PTPRF-215ENST00000496447 ACSF2Q96CM8 615 aaPredicted RBP13.66□□□□□ -0.22
PTPRF-215ENST00000496447 KIF2CQ99661 725 aa13.66□□□□□ -0.22
PTPRF-215ENST00000496447 STN1Q9H668 368 aaKnown RBP13.66□□□□□ -0.22
PTPRF-215ENST00000496447 PDP2Q9P2J9 529 aa13.66□□□□□ -0.22
PTPRF-215ENST00000496447 CHORDC1Q9UHD1 332 aaPredicted RBP13.66□□□□□ -0.22
PTPRF-215ENST00000496447 AGTP01019 485 aa13.66□□□□□ -0.22
PTPRF-215ENST00000496447 ALDH2P05091 517 aa13.66□□□□□ -0.22
PTPRF-215ENST00000496447 LHX1P48742 406 aa13.66□□□□□ -0.22
PTPRF-215ENST00000496447 ICA1LQ8NDH6 482 aa13.66□□□□□ -0.22
PTPRF-215ENST00000496447 DNAJC9Q8WXX5 260 aa13.66□□□□□ -0.22
PTPRF-215ENST00000496447 PKD2L2Q9NZM6 624 aa13.66□□□□□ -0.22
PTPRF-215ENST00000496447 VPS9D1Q9Y2B5 631 aa13.66□□□□□ -0.22
PTPRF-215ENST00000496447 C2orf81A6NN90 581 aa13.65□□□□□ -0.22
PTPRF-215ENST00000496447 TBKBP1A7MCY6 615 aa13.65□□□□□ -0.22
PTPRF-215ENST00000496447 CDH16O75309 829 aa13.65□□□□□ -0.22
PTPRF-215ENST00000496447 FAM107AO95990 144 aa13.65□□□□□ -0.22
PTPRF-215ENST00000496447 F9P00740 461 aa13.65□□□□□ -0.22
PTPRF-215ENST00000496447 GEMP55040 296 aa13.65□□□□□ -0.22
PTPRF-215ENST00000496447 GRIN1Q05586 938 aa13.65□□□□□ -0.22
PTPRF-215ENST00000496447 LY6KQ17RY6 165 aa13.65□□□□□ -0.22
PTPRF-215ENST00000496447 KIAA1683Q9H0B3 1180 aa13.65□□□□□ -0.22
PTPRF-215ENST00000496447 ALDH1A2O94788 518 aa13.65□□□□□ -0.22
PTPRF-215ENST00000496447 DDHD2O94830 711 aa13.65□□□□□ -0.22
PTPRF-215ENST00000496447 MZF1P28698 734 aaPredicted RBP13.65□□□□□ -0.22
PTPRF-215ENST00000496447 BCAT1P54687 386 aa13.65□□□□□ -0.22
PTPRF-215ENST00000496447 OXCT1P55809 520 aa13.65□□□□□ -0.22
PTPRF-215ENST00000496447 EFEMP1Q12805 493 aa13.65□□□□□ -0.22
PTPRF-215ENST00000496447 ELAVL2Q12926 359 aaKnown RBP13.65□□□□□ -0.22
PTPRF-215ENST00000496447 BLOC1S5Q8TDH9 187 aa13.65□□□□□ -0.22
PTPRF-215ENST00000496447 DDI1Q8WTU0 396 aa13.65□□□□□ -0.22
PTPRF-215ENST00000496447 SEC16BQ96JE7 1060 aa13.65□□□□□ -0.22
PTPRF-215ENST00000496447 TRAF3IP3Q9Y228 551 aa13.65□□□□□ -0.22
PTPRF-215ENST00000496447 ARL2BPQ9Y2Y0 163 aa13.65□□□□□ -0.22
PTPRF-215ENST00000496447 NCOA3Q9Y6Q9 1424 aa13.65□□□□□ -0.22
PTPRF-215ENST00000496447 CASTOR2A6NHX0 329 aa13.65□□□□□ -0.22
PTPRF-215ENST00000496447 STRNO43815 780 aa13.65□□□□□ -0.22
PTPRF-215ENST00000496447 FGFR2P21802 821 aa13.65□□□□□ -0.22
PTPRF-215ENST00000496447 PRKCQQ04759 706 aa13.65□□□□□ -0.22
PTPRF-215ENST00000496447 GRIK4Q16099 956 aa13.65□□□□□ -0.22
PTPRF-215ENST00000496447 JAMLQ86YT9 394 aa13.65□□□□□ -0.22
PTPRF-215ENST00000496447 SYN2Q92777 582 aaPredicted RBP13.65□□□□□ -0.22
PTPRF-215ENST00000496447 CYFIP2Q96F07 1278 aa13.65□□□□□ -0.22
PTPRF-215ENST00000496447 IRX2Q9BZI1 471 aaPredicted RBP13.65□□□□□ -0.22
PTPRF-215ENST00000496447 FOXP3Q9BZS1 431 aa13.65□□□□□ -0.22
PTPRF-215ENST00000496447 TBC1D23Q9NUY8 699 aa13.65□□□□□ -0.22
PTPRF-215ENST00000496447 AURKCQ9UQB9 309 aa13.65□□□□□ -0.22
PTPRF-215ENST00000496447 RIMBP3CA6NJZ7 1639 aa13.65□□□□□ -0.22
PTPRF-215ENST00000496447 RIMBP3BA6NNM3 1639 aa13.65□□□□□ -0.22
PTPRF-215ENST00000496447 RIMBP3Q9UFD9 1639 aa13.65□□□□□ -0.22
PTPRF-215ENST00000496447 LAMTOR4Q0VGL1 99 aa13.65□□□□□ -0.22
PTPRF-215ENST00000496447 HIST2H2ACQ16777 129 aaPredicted RBP13.65□□□□□ -0.22
PTPRF-215ENST00000496447 CCDC157Q569K6 752 aa13.65□□□□□ -0.22
PTPRF-215ENST00000496447 HIST2H2AA3Q6FI13 130 aa13.65□□□□□ -0.22
PTPRF-215ENST00000496447 C3orf62Q6ZUJ4 267 aa13.65□□□□□ -0.22
PTPRF-215ENST00000496447 C4orf33Q8N1A6 199 aa13.65□□□□□ -0.22
PTPRF-215ENST00000496447 SOCS4Q8WXH5 440 aa13.65□□□□□ -0.22
PTPRF-215ENST00000496447 TMEM39AQ9NV64 488 aa13.65□□□□□ -0.22
PTPRF-215ENST00000496447 TRIM10Q9UDY6 481 aa13.65□□□□□ -0.22
PTPRF-215ENST00000496447 FLOT2Q14254 428 aa13.64□□□□□ -0.23
PTPRF-215ENST00000496447 PGM5Q15124 567 aa13.64□□□□□ -0.23
PTPRF-215ENST00000496447 PPCSQ9HAB8 311 aa13.64□□□□□ -0.23
PTPRF-215ENST00000496447 GTF3C4Q9UKN8 822 aa13.64□□□□□ -0.23
PTPRF-215ENST00000496447 FAM32AQ9Y421 112 aaKnown RBP13.64□□□□□ -0.23
PTPRF-215ENST00000496447 PPP1R3GB7ZBB8 358 aa13.64□□□□□ -0.23
PTPRF-215ENST00000496447 CLASP2O75122 1294 aaKnown RBP13.64□□□□□ -0.23
PTPRF-215ENST00000496447 AKR1A1P14550 325 aa13.64□□□□□ -0.23
PTPRF-215ENST00000496447 RAP1GAPP47736 663 aa13.64□□□□□ -0.23
PTPRF-215ENST00000496447 MAP3K7CLP57077 242 aa13.64□□□□□ -0.23
PTPRF-215ENST00000496447 TTLL9Q3SXZ7 439 aa13.64□□□□□ -0.23
PTPRF-215ENST00000496447 SGO1Q5FBB7 561 aa13.64□□□□□ -0.23
PTPRF-215ENST00000496447 C4orf19Q8IY42 314 aa13.64□□□□□ -0.23
PTPRF-215ENST00000496447 NUP93Q8N1F7 819 aa13.64□□□□□ -0.23
PTPRF-215ENST00000496447 KANSL3Q9P2N6 904 aa13.64□□□□□ -0.23
PTPRF-215ENST00000496447 SLC12A8A0AV02 714 aa13.64□□□□□ -0.23
PTPRF-215ENST00000496447 CASP4P49662 377 aa13.64□□□□□ -0.23
PTPRF-215ENST00000496447 UGT3A1Q6NUS8 523 aa13.64□□□□□ -0.23
PTPRF-215ENST00000496447 PRMT1Q99873 361 aaKnown RBP13.64□□□□□ -0.23
PTPRF-215ENST00000496447 CBWD1Q9BRT8 395 aa13.64□□□□□ -0.23
PTPRF-215ENST00000496447 XPNPEP3Q9NQH7 507 aa13.64□□□□□ -0.23
PTPRF-215ENST00000496447 FBXO21O94952 628 aa13.64□□□□□ -0.23
PTPRF-215ENST00000496447 MYL4P12829 197 aa13.64□□□□□ -0.23
PTPRF-215ENST00000496447 INSRRP14616 1297 aa13.64□□□□□ -0.23
PTPRF-215ENST00000496447 FDFT1P37268 417 aa13.64□□□□□ -0.23
PTPRF-215ENST00000496447 MAGEA4P43358 317 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms