RNA–Protein interactions for RNA: ENST00000491581.5

HDAC3-211, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 777 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-211ENST00000491581 HSCBQ8IWL3 235 aa9.53□□□□□ -0.88
HDAC3-211ENST00000491581 TOP6BLQ8N6T0 577 aa9.53□□□□□ -0.88
HDAC3-211ENST00000491581 CELF5Q8N6W0 485 aaKnown RBP9.53□□□□□ -0.88
HDAC3-211ENST00000491581 IQUBQ8NA54 791 aa9.53□□□□□ -0.88
HDAC3-211ENST00000491581 CACTINQ8WUQ7 758 aaKnown RBP9.53□□□□□ -0.88
HDAC3-211ENST00000491581 ERLEC1Q96DZ1 483 aa9.53□□□□□ -0.88
HDAC3-211ENST00000491581 EEF2KMTQ96G04 330 aa9.53□□□□□ -0.88
HDAC3-211ENST00000491581 PAGE5Q96GU1 130 aa9.53□□□□□ -0.88
HDAC3-211ENST00000491581 KCNK16Q96T55 309 aa9.53□□□□□ -0.88
HDAC3-211ENST00000491581 NELL2Q99435 816 aa9.53□□□□□ -0.88
HDAC3-211ENST00000491581 CGRRF1Q99675 332 aa9.53□□□□□ -0.88
HDAC3-211ENST00000491581 B3GNT5Q9BYG0 378 aa9.53□□□□□ -0.88
HDAC3-211ENST00000491581 GPR88Q9GZN0 384 aa9.53□□□□□ -0.88
HDAC3-211ENST00000491581 RNF38Q9H0F5 515 aa9.53□□□□□ -0.88
HDAC3-211ENST00000491581 XYLT2Q9H1B5 865 aa9.53□□□□□ -0.88
HDAC3-211ENST00000491581 EPC1Q9H2F5 836 aa9.53□□□□□ -0.88
HDAC3-211ENST00000491581 GOLPH3LQ9H4A5 285 aa9.53□□□□□ -0.88
HDAC3-211ENST00000491581 RXFP3Q9NSD7 469 aa9.53□□□□□ -0.88
HDAC3-211ENST00000491581 TDP1Q9NUW8 608 aa9.53□□□□□ -0.88
HDAC3-211ENST00000491581 SMPD4Q9NXE4 827 aa9.53□□□□□ -0.88
HDAC3-211ENST00000491581 GCNT4Q9P109 453 aa9.53□□□□□ -0.88
HDAC3-211ENST00000491581 MRPS17Q9Y2R5 130 aaKnown RBP9.53□□□□□ -0.88
HDAC3-211ENST00000491581 MYH10P35580 1976 aa9.53□□□□□ -0.88
HDAC3-211ENST00000491581 DCDC2BA2VCK2 349 aa9.52□□□□□ -0.89
HDAC3-211ENST00000491581 F8VP50 259 aa9.52□□□□□ -0.89
HDAC3-211ENST00000491581 DCLK1O15075 740 aa9.52□□□□□ -0.89
HDAC3-211ENST00000491581 EIF3DO15371 548 aaKnown RBP eCLIP9.52□□□□□ -0.89
HDAC3-211ENST00000491581 NCAM2O15394 837 aa9.52□□□□□ -0.89
HDAC3-211ENST00000491581 RNF40O75150 1001 aa9.52□□□□□ -0.89
HDAC3-211ENST00000491581 BEST1O76090 585 aa9.52□□□□□ -0.89
HDAC3-211ENST00000491581 ABL1P00519 1130 aa9.52□□□□□ -0.89
HDAC3-211ENST00000491581 CKMP06732 381 aa9.52□□□□□ -0.89
HDAC3-211ENST00000491581 HSP90AA1P07900 732 aaKnown RBP9.52□□□□□ -0.89
HDAC3-211ENST00000491581 ABCD1P33897 745 aa9.52□□□□□ -0.89
HDAC3-211ENST00000491581 AVPR1AP37288 418 aa9.52□□□□□ -0.89
HDAC3-211ENST00000491581 GRIK1P39086 918 aa9.52□□□□□ -0.89
HDAC3-211ENST00000491581 PNPLA4P41247 253 aa9.52□□□□□ -0.89
HDAC3-211ENST00000491581 CXCL12P48061 93 aa9.52□□□□□ -0.89
HDAC3-211ENST00000491581 GALK1P51570 392 aa9.52□□□□□ -0.89
HDAC3-211ENST00000491581 ALCAMQ13740 583 aa9.52□□□□□ -0.89
HDAC3-211ENST00000491581 PSMD6Q15008 389 aa9.52□□□□□ -0.89
HDAC3-211ENST00000491581 ZNF77Q15935 545 aa9.52□□□□□ -0.89
HDAC3-211ENST00000491581 DUOXA2Q1HG44 320 aa9.52□□□□□ -0.89
HDAC3-211ENST00000491581 GAB4Q2WGN9 574 aa9.52□□□□□ -0.89
HDAC3-211ENST00000491581 ITPRIPL2Q3MIP1 535 aa9.52□□□□□ -0.89
HDAC3-211ENST00000491581 WDR72Q3MJ13 1102 aa9.52□□□□□ -0.89
HDAC3-211ENST00000491581 C1orf220Q5T0J3 134 aa9.52□□□□□ -0.89
HDAC3-211ENST00000491581 ZC3H14Q6PJT7 736 aaKnown RBP9.52□□□□□ -0.89
HDAC3-211ENST00000491581 PAQR9Q6ZVX9 377 aa9.52□□□□□ -0.89
HDAC3-211ENST00000491581 MON1AQ86VX9 555 aa9.52□□□□□ -0.89
HDAC3-211ENST00000491581 RALGPS2Q86X27 583 aaPredicted RBP9.52□□□□□ -0.89
HDAC3-211ENST00000491581 WDR49Q8IV35 697 aa9.52□□□□□ -0.89
HDAC3-211ENST00000491581 OR6B3Q8NGW1 331 aa9.52□□□□□ -0.89
HDAC3-211ENST00000491581 SH3RF2Q8TEC5 729 aa9.52□□□□□ -0.89
HDAC3-211ENST00000491581 C2orf15Q8WU43 125 aaKnown RBP9.52□□□□□ -0.89
HDAC3-211ENST00000491581 LEO1Q8WVC0 666 aaPredicted RBP9.52□□□□□ -0.89
HDAC3-211ENST00000491581 ERCC4Q92889 916 aaPredicted RBP9.52□□□□□ -0.89
HDAC3-211ENST00000491581 GCNAQ96QF7 691 aa9.52□□□□□ -0.89
HDAC3-211ENST00000491581 HHIPQ96QV1 700 aa9.52□□□□□ -0.89
HDAC3-211ENST00000491581 HSFX1Q9UBD0 423 aa9.52□□□□□ -0.89
HDAC3-211ENST00000491581 RCOR1Q9UKL0 485 aa9.52□□□□□ -0.89
HDAC3-211ENST00000491581 PCDHGA2Q9Y5H1 932 aa9.52□□□□□ -0.89
HDAC3-211ENST00000491581 GTF3C3Q9Y5Q9 886 aa9.52□□□□□ -0.89
HDAC3-211ENST00000491581 CLSTN1O94985 981 aa9.51□□□□□ -0.89
HDAC3-211ENST00000491581 CSH1P0DML2 217 aa9.51□□□□□ -0.89
HDAC3-211ENST00000491581 CSH2P0DML3 217 aa9.51□□□□□ -0.89
HDAC3-211ENST00000491581 CCDC130P13994 396 aa9.51□□□□□ -0.89
HDAC3-211ENST00000491581 PTPN1P18031 435 aaKnown RBP9.51□□□□□ -0.89
HDAC3-211ENST00000491581 WARSP23381 471 aaKnown RBP9.51□□□□□ -0.89
HDAC3-211ENST00000491581 GJA4P35212 333 aa9.51□□□□□ -0.89
HDAC3-211ENST00000491581 SLC6A11P48066 632 aa9.51□□□□□ -0.89
HDAC3-211ENST00000491581 NDUFA8P51970 172 aa9.51□□□□□ -0.89
HDAC3-211ENST00000491581 SEC13P55735 322 aa9.51□□□□□ -0.89
HDAC3-211ENST00000491581 POU5F1Q01860 360 aaKnown RBP9.51□□□□□ -0.89
HDAC3-211ENST00000491581 USP4Q13107 963 aa9.51□□□□□ -0.89
HDAC3-211ENST00000491581 MTF1Q14872 753 aa9.51□□□□□ -0.89
HDAC3-211ENST00000491581 NFE2Q16621 373 aaPredicted RBP9.51□□□□□ -0.89
HDAC3-211ENST00000491581 CFAP221Q4G0U5 840 aa9.51□□□□□ -0.89
HDAC3-211ENST00000491581 TMEM196Q5HYL7 178 aa9.51□□□□□ -0.89
HDAC3-211ENST00000491581 CNNM4Q6P4Q7 775 aa9.51□□□□□ -0.89
HDAC3-211ENST00000491581 C12orf40Q86WS4 652 aa9.51□□□□□ -0.89
HDAC3-211ENST00000491581 SMYD4Q8IYR2 804 aaPredicted RBP9.51□□□□□ -0.89
HDAC3-211ENST00000491581 TMEM86AQ8N2M4 240 aa9.51□□□□□ -0.89
HDAC3-211ENST00000491581 XXYLT1Q8NBI6 393 aa9.51□□□□□ -0.89
HDAC3-211ENST00000491581 SCAMP5Q8TAC9 235 aa9.51□□□□□ -0.89
HDAC3-211ENST00000491581 MRPS31Q92665 395 aaKnown RBP9.51□□□□□ -0.89
HDAC3-211ENST00000491581 JAKMIP2Q96AA8 810 aa9.51□□□□□ -0.89
HDAC3-211ENST00000491581 TWNKQ96RR1 684 aa9.51□□□□□ -0.89
HDAC3-211ENST00000491581 KCTD10Q9H3F6 313 aa9.51□□□□□ -0.89
HDAC3-211ENST00000491581 MMRN2Q9H8L6 949 aa9.51□□□□□ -0.89
HDAC3-211ENST00000491581 MAGEC2Q9UBF1 373 aaPredicted RBP9.51□□□□□ -0.89
HDAC3-211ENST00000491581 CDH9Q9ULB4 789 aa9.51□□□□□ -0.89
HDAC3-211ENST00000491581 USP18Q9UMW8 372 aa9.51□□□□□ -0.89
HDAC3-211ENST00000491581 FAM186AA6NE01 2351 aa9.5□□□□□ -0.89
HDAC3-211ENST00000491581 AXIN1O15169 862 aa9.5□□□□□ -0.89
HDAC3-211ENST00000491581 EXOC3O60645 756 aa9.5□□□□□ -0.89
HDAC3-211ENST00000491581 C4BPAP04003 597 aaKnown RBP9.5□□□□□ -0.89
HDAC3-211ENST00000491581 TRIM49P0CI25 452 aa9.5□□□□□ -0.89
HDAC3-211ENST00000491581 TRIM49CP0CI26 452 aa9.5□□□□□ -0.89
HDAC3-211ENST00000491581 HNRNPLP14866 589 aaKnown RBP eCLIP9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms