RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	GOLGA5	Q8TBA6	731 aa		9.43	□□□□□ -0.9
USP4-213	ENST00000488520	ZNF507	Q8TCN5	953 aa		9.43	□□□□□ -0.9
USP4-213	ENST00000488520	ELSPBP1	Q96BH3	223 aa		9.43	□□□□□ -0.9
USP4-213	ENST00000488520	TSG101	Q99816	390 aa		9.43	□□□□□ -0.9
USP4-213	ENST00000488520	ST6GALNAC4	Q9H4F1	302 aa		9.43	□□□□□ -0.9
USP4-213	ENST00000488520	ZFP14	Q9HCL3	533 aa		9.43	□□□□□ -0.9
USP4-213	ENST00000488520	GDE1	Q9NZC3	331 aa		9.43	□□□□□ -0.9
USP4-213	ENST00000488520	CGN	Q9P2M7	1197 aa	Known RBP	9.43	□□□□□ -0.9
USP4-213	ENST00000488520	ARHGAP28	Q9P2N2	729 aa		9.43	□□□□□ -0.9
USP4-213	ENST00000488520	MYOF	Q9NZM1	2061 aa		9.43	□□□□□ -0.9
USP4-213	ENST00000488520	TSC2	P49815	1807 aa		9.42	□□□□□ -0.9
USP4-213	ENST00000488520	CHD6	Q8TD26	2715 aa		9.42	□□□□□ -0.9
USP4-213	ENST00000488520	WDR27	A2RRH5	827 aa		9.42	□□□□□ -0.9
USP4-213	ENST00000488520	BIN1	O00499	593 aa		9.42	□□□□□ -0.9
USP4-213	ENST00000488520	KLRC4	O43908	158 aa		9.42	□□□□□ -0.9
USP4-213	ENST00000488520	LDHA	P00338	332 aa	Known RBP	9.42	□□□□□ -0.9
USP4-213	ENST00000488520	ADRB1	P08588	477 aa		9.42	□□□□□ -0.9
USP4-213	ENST00000488520	POU2F2	P09086	479 aa		9.42	□□□□□ -0.9
USP4-213	ENST00000488520	GJA1	P17302	382 aa		9.42	□□□□□ -0.9
USP4-213	ENST00000488520	FCAR	P24071	287 aa		9.42	□□□□□ -0.9
USP4-213	ENST00000488520	GDI1	P31150	447 aa		9.42	□□□□□ -0.9
USP4-213	ENST00000488520	VIPR2	P41587	438 aa		9.42	□□□□□ -0.9
USP4-213	ENST00000488520	CCR2	P41597	374 aa		9.42	□□□□□ -0.9
USP4-213	ENST00000488520	YARS	P54577	528 aa	Known RBP	9.42	□□□□□ -0.9
USP4-213	ENST00000488520	NRL	P54845	237 aa		9.42	□□□□□ -0.9
USP4-213	ENST00000488520	OSTN	P61366	133 aa		9.42	□□□□□ -0.9
USP4-213	ENST00000488520	SNRPF	P62306	86 aa	Known RBP	9.42	□□□□□ -0.9
USP4-213	ENST00000488520	SATB1	Q01826	763 aa		9.42	□□□□□ -0.9
USP4-213	ENST00000488520	ROR1	Q01973	937 aa		9.42	□□□□□ -0.9
USP4-213	ENST00000488520	DMWD	Q09019	674 aa		9.42	□□□□□ -0.9
USP4-213	ENST00000488520	STK4	Q13043	487 aa		9.42	□□□□□ -0.9
USP4-213	ENST00000488520	SRSF5	Q13243	272 aa	Known RBP	9.42	□□□□□ -0.9
USP4-213	ENST00000488520	NCOA4	Q13772	614 aa		9.42	□□□□□ -0.9
USP4-213	ENST00000488520	UPP1	Q16831	310 aa		9.42	□□□□□ -0.9
USP4-213	ENST00000488520	TPD52L1	Q16890	204 aa	Predicted RBP	9.42	□□□□□ -0.9
USP4-213	ENST00000488520	KNOP1	Q1ED39	458 aa	Known RBP	9.42	□□□□□ -0.9
USP4-213	ENST00000488520	FAM78A	Q5JUQ0	283 aa		9.42	□□□□□ -0.9
USP4-213	ENST00000488520	PRSS36	Q5K4E3	855 aa		9.42	□□□□□ -0.9
USP4-213	ENST00000488520	VIT	Q6UXI7	678 aa		9.42	□□□□□ -0.9
USP4-213	ENST00000488520	ZPBP2	Q6X784	338 aa		9.42	□□□□□ -0.9
USP4-213	ENST00000488520	RIPOR1	Q6ZS17	1223 aa		9.42	□□□□□ -0.9
USP4-213	ENST00000488520	ANKS3	Q6ZW76	656 aa		9.42	□□□□□ -0.9
USP4-213	ENST00000488520	NELFCD	Q8IXH7	590 aa		9.42	□□□□□ -0.9
USP4-213	ENST00000488520	NOC3L	Q8WTT2	800 aa	Known RBP	9.42	□□□□□ -0.9
USP4-213	ENST00000488520	POMGNT1	Q8WZA1	660 aa		9.42	□□□□□ -0.9
USP4-213	ENST00000488520	FAM3C	Q92520	227 aa		9.42	□□□□□ -0.9
USP4-213	ENST00000488520	DNASE1L2	Q92874	299 aa		9.42	□□□□□ -0.9
USP4-213	ENST00000488520	ERCC4	Q92889	916 aa	Predicted RBP	9.42	□□□□□ -0.9
USP4-213	ENST00000488520	HPS3	Q969F9	1004 aa		9.42	□□□□□ -0.9
USP4-213	ENST00000488520	ZSWIM3	Q96MP5	696 aa		9.42	□□□□□ -0.9
USP4-213	ENST00000488520	ACO2	Q99798	780 aa	Known RBP	9.42	□□□□□ -0.9
USP4-213	ENST00000488520	ANP32E	Q9BTT0	268 aa		9.42	□□□□□ -0.9
USP4-213	ENST00000488520	TRMT61B	Q9BVS5	477 aa	Known RBP	9.42	□□□□□ -0.9
USP4-213	ENST00000488520	TARS2	Q9BW92	718 aa	Known RBP	9.42	□□□□□ -0.9
USP4-213	ENST00000488520	FAM126A	Q9BYI3	521 aa	Predicted RBP	9.42	□□□□□ -0.9
USP4-213	ENST00000488520	CHRD	Q9H2X0	955 aa		9.42	□□□□□ -0.9
USP4-213	ENST00000488520	CYP4F11	Q9HBI6	524 aa		9.42	□□□□□ -0.9
USP4-213	ENST00000488520	ZNF334	Q9HCZ1	680 aa	Predicted RBP	9.42	□□□□□ -0.9
USP4-213	ENST00000488520	MAPK8IP1	Q9UQF2	711 aa		9.42	□□□□□ -0.9
USP4-213	ENST00000488520	TNFSF13B	Q9Y275	285 aa		9.42	□□□□□ -0.9
USP4-213	ENST00000488520	PTPRD	P23468	1912 aa		9.41	□□□□□ -0.9
USP4-213	ENST00000488520	UBE4B	O95155	1302 aa		9.41	□□□□□ -0.9
USP4-213	ENST00000488520	FAM181B	A6NEQ2	426 aa		9.41	□□□□□ -0.9
USP4-213	ENST00000488520	CHURC1-FNTB	B4DL54	471 aa		9.41	□□□□□ -0.9
USP4-213	ENST00000488520	MAN2B1	O00754	1011 aa		9.41	□□□□□ -0.9
USP4-213	ENST00000488520	PSMA7	O14818	248 aa		9.41	□□□□□ -0.9
USP4-213	ENST00000488520	TRAPPC3	O43617	180 aa		9.41	□□□□□ -0.9
USP4-213	ENST00000488520	TOM1L1	O75674	476 aa		9.41	□□□□□ -0.9
USP4-213	ENST00000488520	SEC24A	O95486	1093 aa		9.41	□□□□□ -0.9
USP4-213	ENST00000488520	FGFR1OP	O95684	399 aa	Known RBP	9.41	□□□□□ -0.9
USP4-213	ENST00000488520	HARS	P12081	509 aa	Known RBP	9.41	□□□□□ -0.9
USP4-213	ENST00000488520	MYL4	P12829	197 aa		9.41	□□□□□ -0.9
USP4-213	ENST00000488520	TDGF1	P13385	188 aa		9.41	□□□□□ -0.9
USP4-213	ENST00000488520	CCNE1	P24864	410 aa		9.41	□□□□□ -0.9
USP4-213	ENST00000488520	RPL13	P26373	211 aa	Known RBP	9.41	□□□□□ -0.9
USP4-213	ENST00000488520	FNTB	P49356	437 aa		9.41	□□□□□ -0.9
USP4-213	ENST00000488520	SOX4	Q06945	474 aa	Predicted RBP	9.41	□□□□□ -0.9
USP4-213	ENST00000488520	SIM2	Q14190	667 aa	Predicted RBP	9.41	□□□□□ -0.9
USP4-213	ENST00000488520	DCAF4L1	Q3SXM0	396 aa		9.41	□□□□□ -0.9
USP4-213	ENST00000488520	NT5DC1	Q5TFE4	455 aa		9.41	□□□□□ -0.9
USP4-213	ENST00000488520	HEATR6	Q6AI08	1181 aa	Known RBP	9.41	□□□□□ -0.9
USP4-213	ENST00000488520	LAIR1	Q6GTX8	287 aa		9.41	□□□□□ -0.9
USP4-213	ENST00000488520	MPZL3	Q6UWV2	235 aa		9.41	□□□□□ -0.9
USP4-213	ENST00000488520	PDZD4	Q76G19	769 aa	Predicted RBP	9.41	□□□□□ -0.9
USP4-213	ENST00000488520	CELF5	Q8N6W0	485 aa	Known RBP	9.41	□□□□□ -0.9
USP4-213	ENST00000488520	CEP120	Q8N960	986 aa		9.41	□□□□□ -0.9
USP4-213	ENST00000488520	MLKL	Q8NB16	471 aa		9.41	□□□□□ -0.9
USP4-213	ENST00000488520	ZNF461	Q8TAF7	563 aa		9.41	□□□□□ -0.9
USP4-213	ENST00000488520	RHBDD1	Q8TEB9	315 aa		9.41	□□□□□ -0.9
USP4-213	ENST00000488520	ZNF837	Q96EG3	531 aa	Predicted RBP	9.41	□□□□□ -0.9
USP4-213	ENST00000488520	ASB16	Q96NS5	453 aa		9.41	□□□□□ -0.9
USP4-213	ENST00000488520	PPP1R10	Q96QC0	940 aa	Known RBP	9.41	□□□□□ -0.9
USP4-213	ENST00000488520	UCN2	Q96RP3	112 aa		9.41	□□□□□ -0.9
USP4-213	ENST00000488520	MSTO1	Q9BUK6	570 aa		9.41	□□□□□ -0.9
USP4-213	ENST00000488520	CCDC94	Q9BW85	323 aa	Predicted RBP	9.41	□□□□□ -0.9
USP4-213	ENST00000488520	CCDC113	Q9H0I3	377 aa		9.41	□□□□□ -0.9
USP4-213	ENST00000488520	ANKFY1	Q9P2R3	1169 aa		9.41	□□□□□ -0.9
USP4-213	ENST00000488520	MAN1B1	Q9UKM7	699 aa		9.41	□□□□□ -0.9
USP4-213	ENST00000488520	PCDHGA11	Q9Y5H2	935 aa		9.41	□□□□□ -0.9
USP4-213	ENST00000488520	BACE2	Q9Y5Z0	518 aa		9.41	□□□□□ -0.9

Retrieved 100 of 20,778 RNA–protein pairs in 25 ms