RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 GABRQQ9UN88 632 aa4.36□□□□□ -1.71
SMC4-220ENST00000488017 SSX2IPQ9Y2D8 614 aa4.36□□□□□ -1.71
SMC4-220ENST00000488017 FZD9O00144 591 aa4.35□□□□□ -1.71
SMC4-220ENST00000488017 ADAM10O14672 748 aa4.35□□□□□ -1.71
SMC4-220ENST00000488017 TOMM40O96008 361 aa4.35□□□□□ -1.71
SMC4-220ENST00000488017 CRYABP02511 175 aaKnown RBP4.35□□□□□ -1.71
SMC4-220ENST00000488017 ATXN1LP0C7T5 689 aaKnown RBP4.35□□□□□ -1.71
SMC4-220ENST00000488017 RENBPP51606 427 aa4.35□□□□□ -1.71
SMC4-220ENST00000488017 LOXL3P58215 753 aa4.35□□□□□ -1.71
SMC4-220ENST00000488017 SP2Q02086 613 aa4.35□□□□□ -1.71
SMC4-220ENST00000488017 LVRNQ6Q4G3 990 aa4.35□□□□□ -1.71
SMC4-220ENST00000488017 LAYNQ6UX15 382 aa4.35□□□□□ -1.71
SMC4-220ENST00000488017 USP43Q70EL4 1123 aa4.35□□□□□ -1.71
SMC4-220ENST00000488017 GADD45GIP1Q8TAE8 222 aaPredicted RBP4.35□□□□□ -1.71
SMC4-220ENST00000488017 ZNF398Q8TD17 642 aa4.35□□□□□ -1.71
SMC4-220ENST00000488017 COA7Q96BR5 231 aa4.35□□□□□ -1.71
SMC4-220ENST00000488017 THOC3Q96J01 351 aaKnown RBP4.35□□□□□ -1.71
SMC4-220ENST00000488017 SLKQ9H2G2 1235 aaPredicted RBP4.35□□□□□ -1.71
SMC4-220ENST00000488017 SLAMF7Q9NQ25 335 aa4.35□□□□□ -1.71
SMC4-220ENST00000488017 HESX1Q9UBX0 185 aa4.35□□□□□ -1.71
SMC4-220ENST00000488017 CCNL1Q9UK58 526 aaPredicted RBP4.35□□□□□ -1.71
SMC4-220ENST00000488017 PROCRQ9UNN8 238 aa4.35□□□□□ -1.71
SMC4-220ENST00000488017 POLHQ9Y253 713 aa4.35□□□□□ -1.71
SMC4-220ENST00000488017 ZMYM2Q9UBW7 1377 aa4.35□□□□□ -1.71
SMC4-220ENST00000488017 KRTAP9-6A8MVA2 160 aa4.34□□□□□ -1.71
SMC4-220ENST00000488017 BTBD19C9JJ37 291 aa4.34□□□□□ -1.71
SMC4-220ENST00000488017 TMEM232C9JQI7 657 aa4.34□□□□□ -1.71
SMC4-220ENST00000488017 M0QYG6 137 aa4.34□□□□□ -1.71
SMC4-220ENST00000488017 ERC2O15083 957 aa4.34□□□□□ -1.71
SMC4-220ENST00000488017 HOXD9P28356 352 aaPredicted RBP4.34□□□□□ -1.71
SMC4-220ENST00000488017 DSC2Q02487 901 aa4.34□□□□□ -1.71
SMC4-220ENST00000488017 INAVAQ3KP66 663 aa4.34□□□□□ -1.71
SMC4-220ENST00000488017 UBAP2Q5T6F2 1119 aaKnown RBP4.34□□□□□ -1.71
SMC4-220ENST00000488017 DEF8Q6ZN54 512 aa4.34□□□□□ -1.71
SMC4-220ENST00000488017 C18orf65Q6ZTR6 163 aa4.34□□□□□ -1.71
SMC4-220ENST00000488017 PIM3Q86V86 326 aa4.34□□□□□ -1.71
SMC4-220ENST00000488017 ADHFE1Q8IWW8 467 aa4.34□□□□□ -1.71
SMC4-220ENST00000488017 ADAMTS18Q8TE60 1221 aa4.34□□□□□ -1.71
SMC4-220ENST00000488017 XAGE5Q8WWM1 108 aa4.34□□□□□ -1.71
SMC4-220ENST00000488017 R3HDM4Q96D70 268 aa4.34□□□□□ -1.71
SMC4-220ENST00000488017 SLC46A1Q96NT5 459 aa4.34□□□□□ -1.71
SMC4-220ENST00000488017 FYTTD1Q96QD9 318 aaKnown RBP4.34□□□□□ -1.71
SMC4-220ENST00000488017 SIGLEC11Q96RL6 698 aa4.34□□□□□ -1.71
SMC4-220ENST00000488017 EFHD1Q9BUP0 239 aa4.34□□□□□ -1.71
SMC4-220ENST00000488017 C1orf43Q9BWL3 253 aa4.34□□□□□ -1.71
SMC4-220ENST00000488017 CIPCQ9C0C6 399 aa4.34□□□□□ -1.71
SMC4-220ENST00000488017 WDCPQ9H6R7 721 aa4.34□□□□□ -1.71
SMC4-220ENST00000488017 MKS1Q9NXB0 559 aa4.34□□□□□ -1.71
SMC4-220ENST00000488017 TFCP2L1Q9NZI6 479 aa4.34□□□□□ -1.71
SMC4-220ENST00000488017 FNDC1Q4ZHG4 1894 aaPredicted RBP4.34□□□□□ -1.71
SMC4-220ENST00000488017 TCRBV5S1A1TA0A578 114 aa4.33□□□□□ -1.72
SMC4-220ENST00000488017 H3BNX3 289 aa4.33□□□□□ -1.72
SMC4-220ENST00000488017 PRKCBP05771 671 aa4.33□□□□□ -1.72
SMC4-220ENST00000488017 PHKA1P46020 1223 aa4.33□□□□□ -1.72
SMC4-220ENST00000488017 PXNP49023 591 aaPredicted RBP4.33□□□□□ -1.72
SMC4-220ENST00000488017 ACAP2Q15057 778 aa4.33□□□□□ -1.72
SMC4-220ENST00000488017 FAM187BQ17R55 369 aa4.33□□□□□ -1.72
SMC4-220ENST00000488017 LONRF3Q496Y0 759 aa4.33□□□□□ -1.72
SMC4-220ENST00000488017 ARHGAP40Q5TG30 622 aa4.33□□□□□ -1.72
SMC4-220ENST00000488017 PGM2L1Q6PCE3 622 aa4.33□□□□□ -1.72
SMC4-220ENST00000488017 C3orf20Q8ND61 904 aa4.33□□□□□ -1.72
SMC4-220ENST00000488017 FAM46DQ8NEK8 389 aa4.33□□□□□ -1.72
SMC4-220ENST00000488017 C1orf162Q8NEQ5 155 aaPredicted RBP4.33□□□□□ -1.72
SMC4-220ENST00000488017 LENG8Q96PV6 779 aaPredicted RBP4.33□□□□□ -1.72
SMC4-220ENST00000488017 TRMOQ9BU70 441 aa4.33□□□□□ -1.72
SMC4-220ENST00000488017 SQORQ9Y6N5 450 aa4.33□□□□□ -1.72
SMC4-220ENST00000488017 KLHL33A6NCF5 533 aa4.32□□□□□ -1.72
SMC4-220ENST00000488017 GTPBP1O00178 669 aaKnown RBP4.32□□□□□ -1.72
SMC4-220ENST00000488017 DCLK1O15075 740 aa4.32□□□□□ -1.72
SMC4-220ENST00000488017 PDE8BO95263 885 aa4.32□□□□□ -1.72
SMC4-220ENST00000488017 T-ENOLP0DO92 83 aa4.32□□□□□ -1.72
SMC4-220ENST00000488017 PIM1P11309 404 aaPredicted RBP4.32□□□□□ -1.72
SMC4-220ENST00000488017 PSG1P11464 419 aa4.32□□□□□ -1.72
SMC4-220ENST00000488017 MASP1P48740 699 aa4.32□□□□□ -1.72
SMC4-220ENST00000488017 KIF23Q02241 960 aaPredicted RBP4.32□□□□□ -1.72
SMC4-220ENST00000488017 E2F2Q14209 437 aa4.32□□□□□ -1.72
SMC4-220ENST00000488017 C4orf46Q504U0 113 aa4.32□□□□□ -1.72
SMC4-220ENST00000488017 L1TD1Q5T7N2 865 aaKnown RBP4.32□□□□□ -1.72
SMC4-220ENST00000488017 SOCS4Q8WXH5 440 aa4.32□□□□□ -1.72
SMC4-220ENST00000488017 ST6GALNAC1Q9NSC7 600 aaPredicted RBP4.32□□□□□ -1.72
SMC4-220ENST00000488017 CNOT3O75175 753 aaKnown RBP4.31□□□□□ -1.72
SMC4-220ENST00000488017 MYCLP12524 364 aaPredicted RBP4.31□□□□□ -1.72
SMC4-220ENST00000488017 ME1P48163 572 aa4.31□□□□□ -1.72
SMC4-220ENST00000488017 ALDH5A1P51649 535 aaPredicted RBP4.31□□□□□ -1.72
SMC4-220ENST00000488017 IQCB1Q15051 598 aa4.31□□□□□ -1.72
SMC4-220ENST00000488017 ARFGAP1Q8N6T3 406 aa4.31□□□□□ -1.72
SMC4-220ENST00000488017 TTYH3Q9C0H2 523 aa4.31□□□□□ -1.72
SMC4-220ENST00000488017 ICKQ9UPZ9 632 aa4.31□□□□□ -1.72
SMC4-220ENST00000488017 PHLDB1Q86UU1 1377 aa4.3□□□□□ -1.72
SMC4-220ENST00000488017 B4DGG1 531 aa4.3□□□□□ -1.72
SMC4-220ENST00000488017 TLR2O60603 784 aa4.3□□□□□ -1.72
SMC4-220ENST00000488017 TULP3O75386 442 aa4.3□□□□□ -1.72
SMC4-220ENST00000488017 RNF8O76064 485 aa4.3□□□□□ -1.72
SMC4-220ENST00000488017 TGFB3P10600 412 aa4.3□□□□□ -1.72
SMC4-220ENST00000488017 ID2Q02363 134 aa4.3□□□□□ -1.72
SMC4-220ENST00000488017 ZNF91Q05481 1191 aa4.3□□□□□ -1.72
SMC4-220ENST00000488017 ZNF628Q5EBL2 1059 aa4.3□□□□□ -1.72
SMC4-220ENST00000488017 RNASE12Q5GAN4 147 aaKnown RBP4.3□□□□□ -1.72
SMC4-220ENST00000488017 THEMIS2Q5TEJ8 643 aa4.3□□□□□ -1.72
SMC4-220ENST00000488017 RGS7BPQ6MZT1 257 aaPredicted RBP4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms