RNA–Protein interactions for RNA: ENST00000487617.5

HDAC4-209, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 819 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-209ENST00000487617 SPATA17Q96L03 361 aa21.78■■□□□ 1.08
HDAC4-209ENST00000487617 LRRC3BQ96PB8 259 aa21.78■■□□□ 1.08
HDAC4-209ENST00000487617 IMPG2Q9BZV3 1241 aa21.78■■□□□ 1.08
HDAC4-209ENST00000487617 SMG9Q9H0W8 520 aaKnown RBP21.78■■□□□ 1.08
HDAC4-209ENST00000487617 LTB4R2Q9NPC1 389 aa21.78■■□□□ 1.08
HDAC4-209ENST00000487617 TRPV5Q9NQA5 729 aa21.78■■□□□ 1.08
HDAC4-209ENST00000487617 UTP3Q9NQZ2 479 aaKnown RBP eCLIP21.78■■□□□ 1.082e-9■■■■■ 223.6
HDAC4-209ENST00000487617 FAM170BA6NMN3 283 aa21.77■■□□□ 1.08
HDAC4-209ENST00000487617 TRIM66O15016 1216 aa21.77■■□□□ 1.08
HDAC4-209ENST00000487617 CHADO15335 359 aa21.77■■□□□ 1.08
HDAC4-209ENST00000487617 LRRN2O75325 713 aa21.77■■□□□ 1.08
HDAC4-209ENST00000487617 EPB41P11171 864 aaKnown RBP21.77■■□□□ 1.08
HDAC4-209ENST00000487617 AVPR1AP37288 418 aa21.77■■□□□ 1.08
HDAC4-209ENST00000487617 FCHO2Q0JRZ9 810 aa21.77■■□□□ 1.08
HDAC4-209ENST00000487617 ISM2Q6H9L7 571 aa21.77■■□□□ 1.08
HDAC4-209ENST00000487617 MON1AQ86VX9 555 aa21.77■■□□□ 1.08
HDAC4-209ENST00000487617 ADSSL1Q8N142 457 aa21.77■■□□□ 1.08
HDAC4-209ENST00000487617 CELF5Q8N6W0 485 aaKnown RBP21.77■■□□□ 1.08
HDAC4-209ENST00000487617 CSGALNACT1Q8TDX6 532 aa21.77■■□□□ 1.08
HDAC4-209ENST00000487617 TNIP3Q96KP6 325 aa21.77■■□□□ 1.08
HDAC4-209ENST00000487617 B3GNT5Q9BYG0 378 aa21.77■■□□□ 1.08
HDAC4-209ENST00000487617 ZNF518BQ9C0D4 1074 aa21.77■■□□□ 1.08
HDAC4-209ENST00000487617 ELOVL4Q9GZR5 314 aa21.77■■□□□ 1.08
HDAC4-209ENST00000487617 CHMP5Q9NZZ3 219 aa21.77■■□□□ 1.08
HDAC4-209ENST00000487617 DLGAP2Q9P1A6 1054 aa21.77■■□□□ 1.08
HDAC4-209ENST00000487617 MRPS17Q9Y2R5 130 aaKnown RBP21.77■■□□□ 1.08
HDAC4-209ENST00000487617 MTF2Q9Y483 593 aaPredicted RBP21.77■■□□□ 1.08
HDAC4-209ENST00000487617 COL4A3Q01955 1670 aa21.76■■□□□ 1.07
HDAC4-209ENST00000487617 F8VP50 259 aa21.76■■□□□ 1.07
HDAC4-209ENST00000487617 CLDN5O00501 218 aa21.76■■□□□ 1.07
HDAC4-209ENST00000487617 TADA3O75528 432 aa21.76■■□□□ 1.07
HDAC4-209ENST00000487617 ANKRD40Q6AI12 368 aa21.76■■□□□ 1.07
HDAC4-209ENST00000487617 BPIFB1Q8TDL5 484 aa21.76■■□□□ 1.07
HDAC4-209ENST00000487617 TAS1R2Q8TE23 839 aa21.76■■□□□ 1.07
HDAC4-209ENST00000487617 C8orf48Q96LL4 319 aa21.76■■□□□ 1.07
HDAC4-209ENST00000487617 CEP295NLQ96MC4 621 aa21.76■■□□□ 1.07
HDAC4-209ENST00000487617 NELL2Q99435 816 aa21.76■■□□□ 1.07
HDAC4-209ENST00000487617 PHOX2BQ99453 314 aa21.76■■□□□ 1.07
HDAC4-209ENST00000487617 OSBPL6Q9BZF3 934 aa21.76■■□□□ 1.07
HDAC4-209ENST00000487617 TMEM8AQ9HCN3 771 aa21.76■■□□□ 1.07
HDAC4-209ENST00000487617 TRPC7Q9HCX4 862 aa21.76■■□□□ 1.07
HDAC4-209ENST00000487617 MAN1B1Q9UKM7 699 aa21.76■■□□□ 1.07
HDAC4-209ENST00000487617 PIAS3Q9Y6X2 628 aa21.76■■□□□ 1.07
HDAC4-209ENST00000487617 SOBPA7XYQ1 873 aa21.75■■□□□ 1.07
HDAC4-209ENST00000487617 ARNTLO00327 626 aa21.75■■□□□ 1.07
HDAC4-209ENST00000487617 MAN2B1O00754 1011 aa21.75■■□□□ 1.07
HDAC4-209ENST00000487617 GLULP15104 373 aa21.75■■□□□ 1.07
HDAC4-209ENST00000487617 TARSP26639 723 aaKnown RBP21.75■■□□□ 1.07
HDAC4-209ENST00000487617 HOXD11P31277 338 aaPredicted RBP21.75■■□□□ 1.07
HDAC4-209ENST00000487617 GTF2H1P32780 548 aa21.75■■□□□ 1.07
HDAC4-209ENST00000487617 ASPAP45381 313 aa21.75■■□□□ 1.07
HDAC4-209ENST00000487617 PMS1P54277 932 aaKnown RBP21.75■■□□□ 1.07
HDAC4-209ENST00000487617 STIM1Q13586 685 aa21.75■■□□□ 1.07
HDAC4-209ENST00000487617 ANGPT1Q15389 498 aa21.75■■□□□ 1.07
HDAC4-209ENST00000487617 ARHGAP29Q52LW3 1261 aa21.75■■□□□ 1.07
HDAC4-209ENST00000487617 DENND5BQ6ZUT9 1274 aa21.75■■□□□ 1.07
HDAC4-209ENST00000487617 ACOT1Q86TX2 421 aa21.75■■□□□ 1.07
HDAC4-209ENST00000487617 ALYREFQ86V81 257 aaKnown RBP21.75■■□□□ 1.07
HDAC4-209ENST00000487617 ZFYVE19Q96K21 471 aa21.75■■□□□ 1.07
HDAC4-209ENST00000487617 MED10Q9BTT4 135 aa21.75■■□□□ 1.07
HDAC4-209ENST00000487617 BCO2Q9BYV7 579 aa21.75■■□□□ 1.07
HDAC4-209ENST00000487617 THG1LQ9NWX6 298 aaKnown RBP21.75■■□□□ 1.07
HDAC4-209ENST00000487617 ATP8B3O60423 1300 aa21.75■■□□□ 1.07
HDAC4-209ENST00000487617 STX10O60499 249 aa21.74■■□□□ 1.07
HDAC4-209ENST00000487617 KPNA1P52294 538 aaPredicted RBP21.74■■□□□ 1.07
HDAC4-209ENST00000487617 NDST1P52848 882 aa21.74■■□□□ 1.07
HDAC4-209ENST00000487617 CACNA2D1P54289 1103 aa21.74■■□□□ 1.07
HDAC4-209ENST00000487617 USP46P62068 366 aa21.74■■□□□ 1.07
HDAC4-209ENST00000487617 NOP14P78316 857 aaKnown RBP21.74■■□□□ 1.07
HDAC4-209ENST00000487617 FKBP3Q00688 224 aaKnown RBP21.74■■□□□ 1.07
HDAC4-209ENST00000487617 LRRC63Q05C16 580 aa21.74■■□□□ 1.07
HDAC4-209ENST00000487617 ORC1Q13415 861 aa21.74■■□□□ 1.07
HDAC4-209ENST00000487617 KRT39Q6A163 491 aa21.74■■□□□ 1.07
HDAC4-209ENST00000487617 CCDC150Q8NCX0 1101 aa21.74■■□□□ 1.07
HDAC4-209ENST00000487617 USP13Q92995 863 aaPredicted RBP21.74■■□□□ 1.07
HDAC4-209ENST00000487617 APOBEC3GQ9HC16 384 aaKnown RBP21.74■■□□□ 1.07
HDAC4-209ENST00000487617 TDP1Q9NUW8 608 aa21.74■■□□□ 1.07
HDAC4-209ENST00000487617 EHD2Q9NZN4 543 aa21.74■■□□□ 1.07
HDAC4-209ENST00000487617 NDRG2Q9UN36 371 aaKnown RBP21.74■■□□□ 1.07
HDAC4-209ENST00000487617 CCL26Q9Y258 94 aa21.74■■□□□ 1.07
HDAC4-209ENST00000487617 WDFY4Q6ZS81 3184 aa21.73■■□□□ 1.07
HDAC4-209ENST00000487617 TRIM49BA6NDI0 452 aa21.73■■□□□ 1.07
HDAC4-209ENST00000487617 SHISA7A6NL88 538 aa21.73■■□□□ 1.07
HDAC4-209ENST00000487617 PSMA7O14818 248 aa21.73■■□□□ 1.07
HDAC4-209ENST00000487617 NCAM2O15394 837 aa21.73■■□□□ 1.07
HDAC4-209ENST00000487617 SLC16A3O15427 465 aaKnown RBP21.73■■□□□ 1.07
HDAC4-209ENST00000487617 ANP32AP39687 249 aaKnown RBP21.73■■□□□ 1.07
HDAC4-209ENST00000487617 MRE11P49959 708 aa21.73■■□□□ 1.07
HDAC4-209ENST00000487617 MCCD1P59942 119 aaPredicted RBP21.73■■□□□ 1.07
HDAC4-209ENST00000487617 PLCB2Q00722 1185 aa21.73■■□□□ 1.07
HDAC4-209ENST00000487617 FAM35AQ86V20 835 aa21.73■■□□□ 1.07
HDAC4-209ENST00000487617 UNC93AQ86WB7 457 aa21.73■■□□□ 1.07
HDAC4-209ENST00000487617 FAM3CQ92520 227 aa21.73■■□□□ 1.07
HDAC4-209ENST00000487617 DHTKD1Q96HY7 919 aaPredicted RBP21.73■■□□□ 1.07
HDAC4-209ENST00000487617 KIF9Q9HAQ2 790 aa21.73■■□□□ 1.07
HDAC4-209ENST00000487617 TMEM30AQ9NV96 361 aa21.73■■□□□ 1.07
HDAC4-209ENST00000487617 HMGXB4Q9UGU5 601 aa21.73■■□□□ 1.07
HDAC4-209ENST00000487617 CACNA1HO95180 2353 aa21.72■■□□□ 1.07
HDAC4-209ENST00000487617 TRAV19A0A0A6YYK7 116 aa21.72■■□□□ 1.07
HDAC4-209ENST00000487617 CCNE1P24864 410 aa21.72■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms