RNA–Protein interactions for RNA: ENST00000486023.1

COL6A1-204, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 2

Gene COL6A1, Length 968 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-204ENST00000486023 DNASE1L2Q92874 299 aa18.82■□□□□ 0.6
COL6A1-204ENST00000486023 CYP2S1Q96SQ9 504 aa18.82■□□□□ 0.6
COL6A1-204ENST00000486023 TSG101Q99816 390 aa18.82■□□□□ 0.6
COL6A1-204ENST00000486023 B3GNT5Q9BYG0 378 aa18.82■□□□□ 0.6
COL6A1-204ENST00000486023 ZNF518BQ9C0D4 1074 aa18.82■□□□□ 0.6
COL6A1-204ENST00000486023 SDCBP2Q9H190 292 aa18.82■□□□□ 0.6
COL6A1-204ENST00000486023 CCL26Q9Y258 94 aa18.82■□□□□ 0.6
COL6A1-204ENST00000486023 MRPS17Q9Y2R5 130 aaKnown RBP18.82■□□□□ 0.6
COL6A1-204ENST00000486023 F8VP50 259 aa18.81■□□□□ 0.6
COL6A1-204ENST00000486023 IKBKBO14920 756 aa18.81■□□□□ 0.6
COL6A1-204ENST00000486023 CETN3O15182 167 aa18.81■□□□□ 0.6
COL6A1-204ENST00000486023 CHADO15335 359 aa18.81■□□□□ 0.6
COL6A1-204ENST00000486023 KINO60870 393 aaKnown RBP18.81■□□□□ 0.6
COL6A1-204ENST00000486023 CCNE1P24864 410 aa18.81■□□□□ 0.6
COL6A1-204ENST00000486023 TARSP26639 723 aaKnown RBP18.81■□□□□ 0.6
COL6A1-204ENST00000486023 MAGEA11P43364 429 aa18.81■□□□□ 0.6
COL6A1-204ENST00000486023 SOX9P48436 509 aa18.81■□□□□ 0.6
COL6A1-204ENST00000486023 PPP3CAQ08209 521 aa18.81■□□□□ 0.6
COL6A1-204ENST00000486023 VSTM1Q6UX27 236 aa18.81■□□□□ 0.6
COL6A1-204ENST00000486023 ACOT1Q86TX2 421 aa18.81■□□□□ 0.6
COL6A1-204ENST00000486023 CELF5Q8N6W0 485 aaKnown RBP18.81■□□□□ 0.6
COL6A1-204ENST00000486023 TMEM174Q8WUU8 243 aa18.81■□□□□ 0.6
COL6A1-204ENST00000486023 FAM3CQ92520 227 aa18.81■□□□□ 0.6
COL6A1-204ENST00000486023 GSDMAQ96QA5 445 aa18.81■□□□□ 0.6
COL6A1-204ENST00000486023 NELL2Q99435 816 aa18.81■□□□□ 0.6
COL6A1-204ENST00000486023 DDX23Q9BUQ8 820 aaKnown RBP18.81■□□□□ 0.6
COL6A1-204ENST00000486023 THG1LQ9NWX6 298 aaKnown RBP18.81■□□□□ 0.6
COL6A1-204ENST00000486023 GTSE1Q9NYZ3 720 aa18.81■□□□□ 0.6
COL6A1-204ENST00000486023 MAN2B1O00754 1011 aa18.8■□□□□ 0.6
COL6A1-204ENST00000486023 TRIM66O15016 1216 aa18.8■□□□□ 0.6
COL6A1-204ENST00000486023 NCAM2O15394 837 aa18.8■□□□□ 0.6
COL6A1-204ENST00000486023 FAM163BP0C2L3 166 aa18.8■□□□□ 0.6
COL6A1-204ENST00000486023 EPB41P11171 864 aaKnown RBP18.8■□□□□ 0.6
COL6A1-204ENST00000486023 CACNA2D1P54289 1103 aa18.8■□□□□ 0.6
COL6A1-204ENST00000486023 USP46P62068 366 aa18.8■□□□□ 0.6
COL6A1-204ENST00000486023 TNK2Q07912 1038 aa18.8■□□□□ 0.6
COL6A1-204ENST00000486023 NFIL3Q16649 462 aa18.8■□□□□ 0.6
COL6A1-204ENST00000486023 DENND5BQ6ZUT9 1274 aa18.8■□□□□ 0.6
COL6A1-204ENST00000486023 FRMD5Q7Z6J6 570 aa18.8■□□□□ 0.6
COL6A1-204ENST00000486023 MON1AQ86VX9 555 aa18.8■□□□□ 0.6
COL6A1-204ENST00000486023 C1orf210Q8IVY1 113 aa18.8■□□□□ 0.6
COL6A1-204ENST00000486023 TAS1R2Q8TE23 839 aa18.8■□□□□ 0.6
COL6A1-204ENST00000486023 USP13Q92995 863 aaPredicted RBP18.8■□□□□ 0.6
COL6A1-204ENST00000486023 IMPG2Q9BZV3 1241 aa18.8■□□□□ 0.6
COL6A1-204ENST00000486023 GKN1Q9NS71 199 aa18.8■□□□□ 0.6
COL6A1-204ENST00000486023 DLGAP2Q9P1A6 1054 aa18.8■□□□□ 0.6
COL6A1-204ENST00000486023 MAPK13O15264 365 aa18.79■□□□□ 0.6
COL6A1-204ENST00000486023 CKMP06732 381 aa18.79■□□□□ 0.6
COL6A1-204ENST00000486023 CD58P19256 250 aa18.79■□□□□ 0.6
COL6A1-204ENST00000486023 DDX6P26196 483 aaKnown RBP eCLIP18.79■□□□□ 0.6
COL6A1-204ENST00000486023 NDST1P52848 882 aa18.79■□□□□ 0.6
COL6A1-204ENST00000486023 FCHO2Q0JRZ9 810 aa18.79■□□□□ 0.6
COL6A1-204ENST00000486023 ARHGAP29Q52LW3 1261 aa18.79■□□□□ 0.6
COL6A1-204ENST00000486023 TCERG1LQ5VWI1 586 aa18.79■□□□□ 0.6
COL6A1-204ENST00000486023 ANKRD40Q6AI12 368 aa18.79■□□□□ 0.6
COL6A1-204ENST00000486023 CC2D1AQ6P1N0 951 aaPredicted RBP18.79■□□□□ 0.6
COL6A1-204ENST00000486023 ARL14EPQ8N8R7 260 aaPredicted RBP18.79■□□□□ 0.6
COL6A1-204ENST00000486023 CCDC150Q8NCX0 1101 aa18.79■□□□□ 0.6
COL6A1-204ENST00000486023 TRMT2BQ96GJ1 504 aaKnown RBP18.79■□□□□ 0.6
COL6A1-204ENST00000486023 TNIP3Q96KP6 325 aa18.79■□□□□ 0.6
COL6A1-204ENST00000486023 SPATA17Q96L03 361 aa18.79■□□□□ 0.6
COL6A1-204ENST00000486023 MYRFLQ96LU7 910 aa18.79■□□□□ 0.6
COL6A1-204ENST00000486023 TIGD1Q96MW7 591 aa18.79■□□□□ 0.6
COL6A1-204ENST00000486023 SLC22A12Q96S37 553 aa18.79■□□□□ 0.6
COL6A1-204ENST00000486023 ELOVL4Q9GZR5 314 aa18.79■□□□□ 0.6
COL6A1-204ENST00000486023 VRTNQ9H8Y1 702 aa18.79■□□□□ 0.6
COL6A1-204ENST00000486023 TDP1Q9NUW8 608 aa18.79■□□□□ 0.6
COL6A1-204ENST00000486023 TRAV19A0A0A6YYK7 116 aa18.78■□□□□ 0.6
COL6A1-204ENST00000486023 C2orf78A6NCI8 922 aa18.78■□□□□ 0.6
COL6A1-204ENST00000486023 TRIM49BA6NDI0 452 aa18.78■□□□□ 0.6
COL6A1-204ENST00000486023 BIN1O00499 593 aa18.78■□□□□ 0.6
COL6A1-204ENST00000486023 LAMTOR5O43504 91 aa18.78■□□□□ 0.6
COL6A1-204ENST00000486023 TADA3O75528 432 aa18.78■□□□□ 0.6
COL6A1-204ENST00000486023 ASS1P00966 412 aaKnown RBP18.78■□□□□ 0.6
COL6A1-204ENST00000486023 EDRF1Q3B7T1 1238 aa18.78■□□□□ 0.6
COL6A1-204ENST00000486023 ZCWPW2Q504Y3 356 aa18.78■□□□□ 0.6
COL6A1-204ENST00000486023 DCAF17Q5H9S7 520 aaPredicted RBP18.78■□□□□ 0.6
COL6A1-204ENST00000486023 TRIM68Q6AZZ1 485 aa18.78■□□□□ 0.6
COL6A1-204ENST00000486023 KLHL10Q6JEL2 608 aa18.78■□□□□ 0.6
COL6A1-204ENST00000486023 TAF4BQ92750 862 aa18.78■□□□□ 0.6
COL6A1-204ENST00000486023 KCNK16Q96T55 309 aa18.78■□□□□ 0.6
COL6A1-204ENST00000486023 LMAN1LQ9HAT1 526 aa18.78■□□□□ 0.6
COL6A1-204ENST00000486023 OBP2AQ9NY56 170 aa18.78■□□□□ 0.6
COL6A1-204ENST00000486023 TRPM5Q9NZQ8 1165 aa18.78■□□□□ 0.6
COL6A1-204ENST00000486023 HMGXB4Q9UGU5 601 aa18.78■□□□□ 0.6
COL6A1-204ENST00000486023 ZFHX2Q9C0A1 2572 aaPredicted RBP18.77■□□□□ 0.6
COL6A1-204ENST00000486023 SHISA7A6NL88 538 aa18.77■□□□□ 0.6
COL6A1-204ENST00000486023 ARNTLO00327 626 aa18.77■□□□□ 0.6
COL6A1-204ENST00000486023 USP17L7P0C7H9 530 aa18.77■□□□□ 0.6
COL6A1-204ENST00000486023 CCDC130P13994 396 aa18.77■□□□□ 0.6
COL6A1-204ENST00000486023 HDCP19113 662 aa18.77■□□□□ 0.6
COL6A1-204ENST00000486023 PMS1P54277 932 aaKnown RBP18.77■□□□□ 0.6
COL6A1-204ENST00000486023 STIM1Q13586 685 aa18.77■□□□□ 0.6
COL6A1-204ENST00000486023 C12orf29Q8N999 325 aa18.77■□□□□ 0.6
COL6A1-204ENST00000486023 C8orf48Q96LL4 319 aa18.77■□□□□ 0.6
COL6A1-204ENST00000486023 OSBPL6Q9BZF3 934 aa18.77■□□□□ 0.6
COL6A1-204ENST00000486023 EBF3Q9H4W6 596 aa18.77■□□□□ 0.6
COL6A1-204ENST00000486023 APOBEC3GQ9HC16 384 aaKnown RBP18.77■□□□□ 0.6
COL6A1-204ENST00000486023 TMEM8AQ9HCN3 771 aa18.77■□□□□ 0.6
COL6A1-204ENST00000486023 TRPV5Q9NQA5 729 aa18.77■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 253.2 ms