RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 COL25A1Q9BXS0 654 aaPredicted RBP8.56□□□□□ -1.04
USP40-216ENST00000485943 GPR88Q9GZN0 384 aa8.56□□□□□ -1.04
USP40-216ENST00000485943 ELOVL4Q9GZR5 314 aa8.56□□□□□ -1.04
USP40-216ENST00000485943 ZCWPW1Q9H0M4 648 aa8.56□□□□□ -1.04
USP40-216ENST00000485943 PDCL3Q9H2J4 239 aa8.56□□□□□ -1.04
USP40-216ENST00000485943 HESX1Q9UBX0 185 aa8.56□□□□□ -1.04
USP40-216ENST00000485943 SIX4Q9UIU6 781 aa8.56□□□□□ -1.04
USP40-216ENST00000485943 GTF3C4Q9UKN8 822 aa8.56□□□□□ -1.04
USP40-216ENST00000485943 USTQ9Y2C2 406 aa8.56□□□□□ -1.04
USP40-216ENST00000485943 PTPRJQ12913 1337 aa8.55□□□□□ -1.04
USP40-216ENST00000485943 COL6A3P12111 3177 aa8.55□□□□□ -1.04
USP40-216ENST00000485943 GOLGA6L19H0YKK7 550 aa8.55□□□□□ -1.04
USP40-216ENST00000485943 MEFVO15553 781 aaPredicted RBP8.55□□□□□ -1.04
USP40-216ENST00000485943 DCXO43602 365 aa8.55□□□□□ -1.04
USP40-216ENST00000485943 TACC1O75410 805 aa8.55□□□□□ -1.04
USP40-216ENST00000485943 ABLIM3O94929 683 aa8.55□□□□□ -1.04
USP40-216ENST00000485943 C4BPAP04003 597 aaKnown RBP8.55□□□□□ -1.04
USP40-216ENST00000485943 FAM163BP0C2L3 166 aa8.55□□□□□ -1.04
USP40-216ENST00000485943 KRT5P13647 590 aa8.55□□□□□ -1.04
USP40-216ENST00000485943 CD19P15391 556 aa8.55□□□□□ -1.04
USP40-216ENST00000485943 BDNFP23560 247 aa8.55□□□□□ -1.04
USP40-216ENST00000485943 GABRR2P28476 465 aa8.55□□□□□ -1.04
USP40-216ENST00000485943 ERCC5P28715 1186 aaPredicted RBP8.55□□□□□ -1.04
USP40-216ENST00000485943 AVPR1AP37288 418 aa8.55□□□□□ -1.04
USP40-216ENST00000485943 USP8P40818 1118 aa8.55□□□□□ -1.04
USP40-216ENST00000485943 PDE6CP51160 858 aa8.55□□□□□ -1.04
USP40-216ENST00000485943 ZP2Q05996 745 aa8.55□□□□□ -1.04
USP40-216ENST00000485943 MMRN1Q13201 1228 aa8.55□□□□□ -1.04
USP40-216ENST00000485943 MRPL58Q14197 206 aaKnown RBP8.55□□□□□ -1.04
USP40-216ENST00000485943 COL19A1Q14993 1142 aa8.55□□□□□ -1.04
USP40-216ENST00000485943 SOWAHAQ2M3V2 549 aa8.55□□□□□ -1.04
USP40-216ENST00000485943 FILIP1LQ4L180 1135 aa8.55□□□□□ -1.04
USP40-216ENST00000485943 ZNF394Q53GI3 561 aa8.55□□□□□ -1.04
USP40-216ENST00000485943 CT47A1Q5JQC4 288 aaPredicted RBP8.55□□□□□ -1.04
USP40-216ENST00000485943 FKBP15Q5T1M5 1219 aa8.55□□□□□ -1.04
USP40-216ENST00000485943 CC2D1AQ6P1N0 951 aaPredicted RBP8.55□□□□□ -1.04
USP40-216ENST00000485943 LILRA6Q6PI73 481 aa8.55□□□□□ -1.04
USP40-216ENST00000485943 TMEM130Q8N3G9 435 aa8.55□□□□□ -1.04
USP40-216ENST00000485943 B3GALNT2Q8NCR0 500 aa8.55□□□□□ -1.04
USP40-216ENST00000485943 STKLD1Q8NE28 680 aa8.55□□□□□ -1.04
USP40-216ENST00000485943 MYLPFQ96A32 169 aa8.55□□□□□ -1.04
USP40-216ENST00000485943 MCRS1Q96EZ8 462 aa8.55□□□□□ -1.04
USP40-216ENST00000485943 FUBP3Q96I24 572 aaKnown RBP eCLIP8.55□□□□□ -1.04
USP40-216ENST00000485943 FAM81BQ96LP2 452 aa8.55□□□□□ -1.04
USP40-216ENST00000485943 HEXIM2Q96MH2 286 aaKnown RBP8.55□□□□□ -1.04
USP40-216ENST00000485943 SLITRK1Q96PX8 696 aa8.55□□□□□ -1.04
USP40-216ENST00000485943 TMEM209Q96SK2 561 aa8.55□□□□□ -1.04
USP40-216ENST00000485943 C1QTNF1Q9BXJ1 281 aa8.55□□□□□ -1.04
USP40-216ENST00000485943 S1PR5Q9H228 398 aa8.55□□□□□ -1.04
USP40-216ENST00000485943 THAP9Q9H5L6 903 aa8.55□□□□□ -1.04
USP40-216ENST00000485943 CYP3A43Q9HB55 503 aa8.55□□□□□ -1.04
USP40-216ENST00000485943 TRPC7Q9HCX4 862 aa8.55□□□□□ -1.04
USP40-216ENST00000485943 GCNT4Q9P109 453 aa8.55□□□□□ -1.04
USP40-216ENST00000485943 HSFX1Q9UBD0 423 aa8.55□□□□□ -1.04
USP40-216ENST00000485943 PCDHB9Q9Y5E1 797 aa8.55□□□□□ -1.04
USP40-216ENST00000485943 C2orf16Q68DN1 1984 aa8.55□□□□□ -1.04
USP40-216ENST00000485943 SMTNL1A8MU46 457 aa8.54□□□□□ -1.04
USP40-216ENST00000485943 C2CD4DB7Z1M9 353 aa8.54□□□□□ -1.04
USP40-216ENST00000485943 TBC1D4O60343 1298 aa8.54□□□□□ -1.04
USP40-216ENST00000485943 SOAT2O75908 522 aa8.54□□□□□ -1.04
USP40-216ENST00000485943 STAU1O95793 577 aaKnown RBP8.54□□□□□ -1.04
USP40-216ENST00000485943 HAPLN1P10915 354 aaPredicted RBP8.54□□□□□ -1.04
USP40-216ENST00000485943 PTPN1P18031 435 aaKnown RBP8.54□□□□□ -1.04
USP40-216ENST00000485943 IGFBP6P24592 240 aaPredicted RBP8.54□□□□□ -1.04
USP40-216ENST00000485943 ADORA2BP29275 332 aa8.54□□□□□ -1.04
USP40-216ENST00000485943 FMO5P49326 533 aa8.54□□□□□ -1.04
USP40-216ENST00000485943 NDST1P52848 882 aa8.54□□□□□ -1.04
USP40-216ENST00000485943 PMS1P54277 932 aaKnown RBP8.54□□□□□ -1.04
USP40-216ENST00000485943 MFAP3P55082 362 aa8.54□□□□□ -1.04
USP40-216ENST00000485943 CDH8P55286 799 aa8.54□□□□□ -1.04
USP40-216ENST00000485943 DPCR1Q3MIW9 517 aa8.54□□□□□ -1.04
USP40-216ENST00000485943 ZCWPW2Q504Y3 356 aa8.54□□□□□ -1.04
USP40-216ENST00000485943 HSP90AA4PQ58FG1 418 aa8.54□□□□□ -1.04
USP40-216ENST00000485943 C4orf48Q5BLP8 95 aa8.54□□□□□ -1.04
USP40-216ENST00000485943 SPOPLQ6IQ16 392 aa8.54□□□□□ -1.04
USP40-216ENST00000485943 VSTM1Q6UX27 236 aa8.54□□□□□ -1.04
USP40-216ENST00000485943 CD300LGQ6UXG3 332 aa8.54□□□□□ -1.04
USP40-216ENST00000485943 RSPO2Q6UXX9 243 aaPredicted RBP8.54□□□□□ -1.04
USP40-216ENST00000485943 GBP6Q6ZN66 633 aa8.54□□□□□ -1.04
USP40-216ENST00000485943 ACOT1Q86TX2 421 aa8.54□□□□□ -1.04
USP40-216ENST00000485943 UNC93AQ86WB7 457 aa8.54□□□□□ -1.04
USP40-216ENST00000485943 RNF135Q8IUD6 432 aa8.54□□□□□ -1.04
USP40-216ENST00000485943 SUGP1Q8IWZ8 645 aaKnown RBP8.54□□□□□ -1.04
USP40-216ENST00000485943 OR10T2Q8NGX3 314 aa8.54□□□□□ -1.04
USP40-216ENST00000485943 MYCBPAPQ8TBZ2 947 aa8.54□□□□□ -1.04
USP40-216ENST00000485943 TAS1R2Q8TE23 839 aa8.54□□□□□ -1.04
USP40-216ENST00000485943 TMEM174Q8WUU8 243 aa8.54□□□□□ -1.04
USP40-216ENST00000485943 SUSD6Q92537 303 aa8.54□□□□□ -1.04
USP40-216ENST00000485943 BAP1Q92560 729 aa8.54□□□□□ -1.04
USP40-216ENST00000485943 GOLGA1Q92805 767 aa8.54□□□□□ -1.04
USP40-216ENST00000485943 NXPE3Q969Y0 559 aa8.54□□□□□ -1.04
USP40-216ENST00000485943 JAKMIP2Q96AA8 810 aa8.54□□□□□ -1.04
USP40-216ENST00000485943 SMARCD1Q96GM5 515 aa8.54□□□□□ -1.04
USP40-216ENST00000485943 LPIN3Q9BQK8 851 aa8.54□□□□□ -1.04
USP40-216ENST00000485943 MRPL45Q9BRJ2 306 aaKnown RBP8.54□□□□□ -1.04
USP40-216ENST00000485943 SMYD3Q9H7B4 428 aa8.54□□□□□ -1.04
USP40-216ENST00000485943 ABCB6Q9NP58 842 aa8.54□□□□□ -1.04
USP40-216ENST00000485943 HCFC1R1Q9NWW0 138 aa8.54□□□□□ -1.04
USP40-216ENST00000485943 THG1LQ9NWX6 298 aaKnown RBP8.54□□□□□ -1.04
USP40-216ENST00000485943 IGSF9Q9P2J2 1179 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms