RNA–Protein interactions for RNA: ENST00000482217.1

VPS41-212, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 951 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-212ENST00000482217 RILPL2Q969X0 211 aa4.55□□□□□ -1.68
VPS41-212ENST00000482217 SYAP1Q96A49 352 aaPredicted RBP4.55□□□□□ -1.68
VPS41-212ENST00000482217 ARL8AQ96BM9 186 aa4.55□□□□□ -1.68
VPS41-212ENST00000482217 CNDP2Q96KP4 475 aaKnown RBP4.55□□□□□ -1.68
VPS41-212ENST00000482217 AGAP3Q96P47 875 aa4.55□□□□□ -1.68
VPS41-212ENST00000482217 LRFN3Q9BTN0 628 aa4.55□□□□□ -1.68
VPS41-212ENST00000482217 ARHGAP39Q9C0H5 1083 aa4.55□□□□□ -1.68
VPS41-212ENST00000482217 TMEM60Q9H2L4 133 aa4.55□□□□□ -1.68
VPS41-212ENST00000482217 ZWILCHQ9H900 591 aa4.55□□□□□ -1.68
VPS41-212ENST00000482217 PCSK1NQ9UHG2 260 aa4.55□□□□□ -1.68
VPS41-212ENST00000482217 SH3BGRL2Q9UJC5 107 aa4.55□□□□□ -1.68
VPS41-212ENST00000482217 C19orf53Q9UNZ5 99 aaPredicted RBP4.55□□□□□ -1.68
VPS41-212ENST00000482217 CORO2BQ9UQ03 480 aa4.55□□□□□ -1.68
VPS41-212ENST00000482217 PIK3R4Q99570 1358 aa4.54□□□□□ -1.68
VPS41-212ENST00000482217 NRP1O14786 923 aa4.54□□□□□ -1.68
VPS41-212ENST00000482217 PRAMEF4O60810 478 aa4.54□□□□□ -1.68
VPS41-212ENST00000482217 ALDH1A2O94788 518 aa4.54□□□□□ -1.68
VPS41-212ENST00000482217 ENDOD1O94919 500 aa4.54□□□□□ -1.68
VPS41-212ENST00000482217 JUNP05412 331 aaKnown RBP4.54□□□□□ -1.68
VPS41-212ENST00000482217 VSIG10L2P0DP72 767 aa4.54□□□□□ -1.68
VPS41-212ENST00000482217 HOXD13P35453 343 aa4.54□□□□□ -1.68
VPS41-212ENST00000482217 ADCY7P51828 1080 aa4.54□□□□□ -1.68
VPS41-212ENST00000482217 YBEYP58557 167 aaPredicted RBP4.54□□□□□ -1.68
VPS41-212ENST00000482217 UBXN1Q04323 297 aa4.54□□□□□ -1.68
VPS41-212ENST00000482217 HGFACQ04756 655 aa4.54□□□□□ -1.68
VPS41-212ENST00000482217 LRRC74AQ0VAA2 488 aa4.54□□□□□ -1.68
VPS41-212ENST00000482217 PRKG1Q13976 671 aa4.54□□□□□ -1.68
VPS41-212ENST00000482217 TNIP1Q15025 636 aa4.54□□□□□ -1.68
VPS41-212ENST00000482217 UBE3CQ15386 1083 aa4.54□□□□□ -1.68
VPS41-212ENST00000482217 SURF1Q15526 300 aa4.54□□□□□ -1.68
VPS41-212ENST00000482217 ATP2B3Q16720 1220 aa4.54□□□□□ -1.68
VPS41-212ENST00000482217 UAP1L1Q3KQV9 507 aa4.54□□□□□ -1.68
VPS41-212ENST00000482217 RABL6Q3YEC7 729 aaPredicted RBP4.54□□□□□ -1.68
VPS41-212ENST00000482217 RNF220Q5VTB9 566 aa4.54□□□□□ -1.68
VPS41-212ENST00000482217 RAB12Q6IQ22 244 aa4.54□□□□□ -1.68
VPS41-212ENST00000482217 DARS2Q6PI48 645 aaKnown RBP4.54□□□□□ -1.68
VPS41-212ENST00000482217 RFX8Q6ZV50 586 aa4.54□□□□□ -1.68
VPS41-212ENST00000482217 RAPH1Q70E73 1250 aa4.54□□□□□ -1.68
VPS41-212ENST00000482217 USP45Q70EL2 814 aa4.54□□□□□ -1.68
VPS41-212ENST00000482217 MIGA2Q7L4E1 593 aa4.54□□□□□ -1.68
VPS41-212ENST00000482217 CCDC170Q8IYT3 715 aa4.54□□□□□ -1.68
VPS41-212ENST00000482217 ZDHHC14Q8IZN3 488 aa4.54□□□□□ -1.68
VPS41-212ENST00000482217 LGI4Q8N135 537 aa4.54□□□□□ -1.68
VPS41-212ENST00000482217 PRR18Q8N4B5 295 aa4.54□□□□□ -1.68
VPS41-212ENST00000482217 ATG16L2Q8NAA4 619 aa4.54□□□□□ -1.68
VPS41-212ENST00000482217 ZNF527Q8NB42 609 aa4.54□□□□□ -1.68
VPS41-212ENST00000482217 ZMIZ2Q8NF64 920 aa4.54□□□□□ -1.68
VPS41-212ENST00000482217 IL17RDQ8NFM7 739 aa4.54□□□□□ -1.68
VPS41-212ENST00000482217 BRSK1Q8TDC3 778 aa4.54□□□□□ -1.68
VPS41-212ENST00000482217 ZNF480Q8WV37 535 aa4.54□□□□□ -1.68
VPS41-212ENST00000482217 ANKRD49Q8WVL7 239 aa4.54□□□□□ -1.68
VPS41-212ENST00000482217 RUFY2Q8WXA3 655 aa4.54□□□□□ -1.68
VPS41-212ENST00000482217 ARHGEF2Q92974 986 aaKnown RBP4.54□□□□□ -1.68
VPS41-212ENST00000482217 HDAC10Q969S8 669 aa4.54□□□□□ -1.68
VPS41-212ENST00000482217 KIF1BPQ96EK5 621 aa4.54□□□□□ -1.68
VPS41-212ENST00000482217 CNDP1Q96KN2 507 aa4.54□□□□□ -1.68
VPS41-212ENST00000482217 ZNF396Q96N95 335 aaPredicted RBP4.54□□□□□ -1.68
VPS41-212ENST00000482217 CCDC94Q9BW85 323 aaPredicted RBP4.54□□□□□ -1.68
VPS41-212ENST00000482217 C2orf40Q9H1Z8 148 aa4.54□□□□□ -1.68
VPS41-212ENST00000482217 LIN28AQ9H9Z2 209 aaKnown RBP4.54□□□□□ -1.68
VPS41-212ENST00000482217 HPF1Q9NWY4 346 aa4.54□□□□□ -1.68
VPS41-212ENST00000482217 C6orf203Q9P0P8 240 aaPredicted RBP4.54□□□□□ -1.68
VPS41-212ENST00000482217 HECAQ9UBI9 543 aaPredicted RBP4.54□□□□□ -1.68
VPS41-212ENST00000482217 SERPINB13Q9UIV8 391 aa4.54□□□□□ -1.68
VPS41-212ENST00000482217 L1RE1Q9UN81 338 aa4.54□□□□□ -1.68
VPS41-212ENST00000482217 RBM8AQ9Y5S9 174 aaKnown RBP4.54□□□□□ -1.68
VPS41-212ENST00000482217 ZFP37Q9Y6Q3 630 aaPredicted RBP4.54□□□□□ -1.68
VPS41-212ENST00000482217 FLT1P17948 1338 aa4.53□□□□□ -1.68
VPS41-212ENST00000482217 F5H0A9 414 aaPredicted RBP4.53□□□□□ -1.68
VPS41-212ENST00000482217 PI4K2BG5E9Z4 385 aa4.53□□□□□ -1.68
VPS41-212ENST00000482217 ADAMTS3O15072 1205 aa4.53□□□□□ -1.68
VPS41-212ENST00000482217 HTRA2O43464 458 aaPredicted RBP4.53□□□□□ -1.68
VPS41-212ENST00000482217 B3GALT2O43825 422 aa4.53□□□□□ -1.68
VPS41-212ENST00000482217 B4GALT3O60512 393 aa4.53□□□□□ -1.68
VPS41-212ENST00000482217 SRGAP2O75044 1071 aa4.53□□□□□ -1.68
VPS41-212ENST00000482217 STAM2O75886 525 aa4.53□□□□□ -1.68
VPS41-212ENST00000482217 TOX4O94842 621 aa4.53□□□□□ -1.68
VPS41-212ENST00000482217 KIAA0754O94854 1291 aa4.53□□□□□ -1.68
VPS41-212ENST00000482217 UBXN7O94888 489 aa4.53□□□□□ -1.68
VPS41-212ENST00000482217 SNX4O95219 450 aa4.53□□□□□ -1.68
VPS41-212ENST00000482217 GASTP01350 101 aa4.53□□□□□ -1.68
VPS41-212ENST00000482217 HDCP19113 662 aa4.53□□□□□ -1.68
VPS41-212ENST00000482217 PDCP20941 246 aa4.53□□□□□ -1.68
VPS41-212ENST00000482217 EDNRBP24530 442 aa4.53□□□□□ -1.68
VPS41-212ENST00000482217 PBLDP30039 288 aaPredicted RBP4.53□□□□□ -1.68
VPS41-212ENST00000482217 ECHS1P30084 290 aa4.53□□□□□ -1.68
VPS41-212ENST00000482217 TECP42680 631 aa4.53□□□□□ -1.68
VPS41-212ENST00000482217 ITGA8P53708 1063 aa4.53□□□□□ -1.68
VPS41-212ENST00000482217 CLNS1AP54105 237 aaKnown RBP4.53□□□□□ -1.68
VPS41-212ENST00000482217 RRP1P56182 461 aaKnown RBP4.53□□□□□ -1.68
VPS41-212ENST00000482217 CYP4A11Q02928 519 aa4.53□□□□□ -1.68
VPS41-212ENST00000482217 EIF2B5Q13144 721 aaKnown RBP4.53□□□□□ -1.68
VPS41-212ENST00000482217 ERV3-1Q14264 604 aa4.53□□□□□ -1.68
VPS41-212ENST00000482217 KCNB1Q14721 858 aa4.53□□□□□ -1.68
VPS41-212ENST00000482217 ACAP1Q15027 740 aa4.53□□□□□ -1.68
VPS41-212ENST00000482217 NOMO1Q15155 1222 aa4.53□□□□□ -1.68
VPS41-212ENST00000482217 FAM110CQ1W6H9 321 aa4.53□□□□□ -1.68
VPS41-212ENST00000482217 MST1LQ2TV78 715 aa4.53□□□□□ -1.68
VPS41-212ENST00000482217 MAJINQ3KP22 176 aa4.53□□□□□ -1.68
VPS41-212ENST00000482217 TTC39AQ5SRH9 613 aa4.53□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms