RNA–Protein interactions for RNA: ENST00000474835.5

USP16-205, Transcript of ubiquitin specific peptidase 16, humanhuman

TSL 1 (best)

Gene USP16, Length 3,835 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP16-205ENST00000474835 ZNF829Q3KNS6 432 aaPredicted RBP4.31□□□□□ -1.72
USP16-205ENST00000474835 C12orf60Q5U649 245 aa4.31□□□□□ -1.72
USP16-205ENST00000474835 HMBOX1Q6NT76 420 aa4.31□□□□□ -1.72
USP16-205ENST00000474835 ZNF449Q6P9G9 518 aa4.31□□□□□ -1.72
USP16-205ENST00000474835 ANO5Q75V66 913 aa4.31□□□□□ -1.72
USP16-205ENST00000474835 DAAM2Q86T65 1068 aa4.31□□□□□ -1.72
USP16-205ENST00000474835 FAM133AQ8N9E0 248 aa4.31□□□□□ -1.72
USP16-205ENST00000474835 CMASQ8NFW8 434 aaPredicted RBP4.31□□□□□ -1.72
USP16-205ENST00000474835 EPS8L1Q8TE68 723 aa4.31□□□□□ -1.72
USP16-205ENST00000474835 SHC3Q92529 594 aa4.31□□□□□ -1.72
USP16-205ENST00000474835 JADE3Q92613 823 aa4.31□□□□□ -1.72
USP16-205ENST00000474835 LARP4BQ92615 738 aaKnown RBP4.31□□□□□ -1.72
USP16-205ENST00000474835 CELF1Q92879 486 aaKnown RBP4.31□□□□□ -1.72
USP16-205ENST00000474835 SNF8Q96H20 258 aa4.31□□□□□ -1.72
USP16-205ENST00000474835 TRIM47Q96LD4 638 aa4.31□□□□□ -1.72
USP16-205ENST00000474835 POP1Q99575 1024 aaKnown RBP4.31□□□□□ -1.72
USP16-205ENST00000474835 TUBA1CQ9BQE3 449 aa4.31□□□□□ -1.72
USP16-205ENST00000474835 TRAIPQ9BWF2 469 aa4.31□□□□□ -1.72
USP16-205ENST00000474835 ACSS3Q9H6R3 686 aa4.31□□□□□ -1.72
USP16-205ENST00000474835 RPF2Q9H7B2 306 aaKnown RBP4.31□□□□□ -1.72
USP16-205ENST00000474835 NANOGQ9H9S0 305 aa4.31□□□□□ -1.72
USP16-205ENST00000474835 FBXO8Q9NRD0 319 aa4.31□□□□□ -1.72
USP16-205ENST00000474835 PARVAQ9NVD7 372 aa4.31□□□□□ -1.72
USP16-205ENST00000474835 DNAJC28Q9NX36 388 aa4.31□□□□□ -1.72
USP16-205ENST00000474835 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP4.31□□□□□ -1.72
USP16-205ENST00000474835 ERGIC3Q9Y282 383 aa4.31□□□□□ -1.72
USP16-205ENST00000474835 R3HDM2Q9Y2K5 976 aaKnown RBP4.31□□□□□ -1.72
USP16-205ENST00000474835 MTO1Q9Y2Z2 717 aaKnown RBP4.31□□□□□ -1.72
USP16-205ENST00000474835 AFG3L2Q9Y4W6 797 aa4.31□□□□□ -1.72
USP16-205ENST00000474835 NEUROG3Q9Y4Z2 214 aa4.31□□□□□ -1.72
USP16-205ENST00000474835 TEX264Q9Y6I9 313 aa4.31□□□□□ -1.72
USP16-205ENST00000474835 SHROOM3Q8TF72 1996 aa4.31□□□□□ -1.72
USP16-205ENST00000474835 MIA3Q5JRA6 1907 aa4.31□□□□□ -1.72
USP16-205ENST00000474835 TCRBV3S1A0A5B6 114 aa4.31□□□□□ -1.72
USP16-205ENST00000474835 OR5K3A6NET4 321 aa4.31□□□□□ -1.72
USP16-205ENST00000474835 SPDYE16A6NNV3 312 aaPredicted RBP4.31□□□□□ -1.72
USP16-205ENST00000474835 FAM47E-STBD1D6RA91 191 aa4.31□□□□□ -1.72
USP16-205ENST00000474835 BOLA2-SMG1P6H3BVE0 249 aa4.31□□□□□ -1.72
USP16-205ENST00000474835 AXIN1O15169 862 aa4.31□□□□□ -1.72
USP16-205ENST00000474835 NDUFA2O43678 99 aa4.31□□□□□ -1.72
USP16-205ENST00000474835 TRMUO75648 421 aaKnown RBP4.31□□□□□ -1.72
USP16-205ENST00000474835 ATG7O95352 703 aa4.31□□□□□ -1.72
USP16-205ENST00000474835 NTSR2O95665 410 aa4.31□□□□□ -1.72
USP16-205ENST00000474835 CYP3A4P08684 503 aa4.31□□□□□ -1.72
USP16-205ENST00000474835 ETV6P41212 452 aa4.31□□□□□ -1.72
USP16-205ENST00000474835 HARS2P49590 506 aaKnown RBP4.31□□□□□ -1.72
USP16-205ENST00000474835 PPIDQ08752 370 aaKnown RBP4.31□□□□□ -1.72
USP16-205ENST00000474835 ANKDD1AQ495B1 522 aa4.31□□□□□ -1.72
USP16-205ENST00000474835 ANKRD26P1Q6NSI1 321 aa4.31□□□□□ -1.72
USP16-205ENST00000474835 CCDC137Q6PK04 289 aaKnown RBP4.31□□□□□ -1.72
USP16-205ENST00000474835 BNC2Q6ZN30 1099 aaPredicted RBP4.31□□□□□ -1.72
USP16-205ENST00000474835 MFSD6Q6ZSS7 791 aa4.31□□□□□ -1.72
USP16-205ENST00000474835 ZNF534Q76KX8 674 aa4.31□□□□□ -1.72
USP16-205ENST00000474835 MON1BQ7L1V2 547 aa4.31□□□□□ -1.72
USP16-205ENST00000474835 TRIM22Q8IYM9 498 aa4.31□□□□□ -1.72
USP16-205ENST00000474835 THEMISQ8N1K5 641 aaPredicted RBP4.31□□□□□ -1.72
USP16-205ENST00000474835 ANKRD13CQ8N6S4 541 aa4.31□□□□□ -1.72
USP16-205ENST00000474835 KIAA1958Q8N8K9 716 aa4.31□□□□□ -1.72
USP16-205ENST00000474835 TMC2Q8TDI7 906 aa4.31□□□□□ -1.72
USP16-205ENST00000474835 TFB1MQ8WVM0 346 aaKnown RBP4.31□□□□□ -1.72
USP16-205ENST00000474835 TRUB1Q8WWH5 349 aaKnown RBP4.31□□□□□ -1.72
USP16-205ENST00000474835 TOP1MTQ969P6 601 aa4.31□□□□□ -1.72
USP16-205ENST00000474835 ASB2Q96Q27 587 aa4.31□□□□□ -1.72
USP16-205ENST00000474835 CSF3RQ99062 836 aa4.31□□□□□ -1.72
USP16-205ENST00000474835 CENPKQ9BS16 269 aa4.31□□□□□ -1.72
USP16-205ENST00000474835 LSM14BQ9BX40 385 aaKnown RBP4.31□□□□□ -1.72
USP16-205ENST00000474835 OSBPL6Q9BZF3 934 aa4.31□□□□□ -1.72
USP16-205ENST00000474835 HOXD1Q9GZZ0 328 aa4.31□□□□□ -1.72
USP16-205ENST00000474835 RNF41Q9H4P4 317 aaPredicted RBP4.31□□□□□ -1.72
USP16-205ENST00000474835 DCP1AQ9NPI6 582 aaPredicted RBP4.31□□□□□ -1.72
USP16-205ENST00000474835 USP22Q9UPT9 525 aa4.31□□□□□ -1.72
USP16-205ENST00000474835 PCDHGB1Q9Y5G3 927 aa4.31□□□□□ -1.72
USP16-205ENST00000474835 SEC23IPQ9Y6Y8 1000 aaKnown RBP4.31□□□□□ -1.72
USP16-205ENST00000474835 V9GY48 417 aaPredicted RBP4.31□□□□□ -1.72
USP16-205ENST00000474835 DNALI1O14645 258 aaPredicted RBP4.3□□□□□ -1.72
USP16-205ENST00000474835 CPLX1O14810 134 aa4.3□□□□□ -1.72
USP16-205ENST00000474835 PARNO95453 639 aaKnown RBP4.3□□□□□ -1.72
USP16-205ENST00000474835 CRTAMO95727 393 aa4.3□□□□□ -1.72
USP16-205ENST00000474835 ITGAVP06756 1048 aa4.3□□□□□ -1.72
USP16-205ENST00000474835 C6orf222P0C671 652 aaPredicted RBP4.3□□□□□ -1.72
USP16-205ENST00000474835 CD1EP15812 388 aa4.3□□□□□ -1.72
USP16-205ENST00000474835 DESP17661 470 aa4.3□□□□□ -1.72
USP16-205ENST00000474835 ITGAXP20702 1163 aa4.3□□□□□ -1.72
USP16-205ENST00000474835 TBXAS1P24557 533 aaPredicted RBP4.3□□□□□ -1.72
USP16-205ENST00000474835 PSMD7P51665 324 aa4.3□□□□□ -1.72
USP16-205ENST00000474835 PDE4DQ08499 809 aa4.3□□□□□ -1.72
USP16-205ENST00000474835 WASHC5Q12768 1159 aa4.3□□□□□ -1.72
USP16-205ENST00000474835 SELENBP1Q13228 472 aa4.3□□□□□ -1.72
USP16-205ENST00000474835 ATP1A4Q13733 1029 aa4.3□□□□□ -1.72
USP16-205ENST00000474835 CBWD6Q4V339 395 aa4.3□□□□□ -1.72
USP16-205ENST00000474835 CBWD3Q5JTY5 395 aa4.3□□□□□ -1.72
USP16-205ENST00000474835 CBWD5Q5RIA9 395 aa4.3□□□□□ -1.72
USP16-205ENST00000474835 PCNX4Q63HM2 1172 aa4.3□□□□□ -1.72
USP16-205ENST00000474835 PPP4R4Q6NUP7 873 aa4.3□□□□□ -1.72
USP16-205ENST00000474835 CHSY3Q70JA7 882 aa4.3□□□□□ -1.72
USP16-205ENST00000474835 CLEC14AQ86T13 490 aa4.3□□□□□ -1.72
USP16-205ENST00000474835 TTC7BQ86TV6 843 aa4.3□□□□□ -1.72
USP16-205ENST00000474835 MTDHQ86UE4 582 aaKnown RBP4.3□□□□□ -1.72
USP16-205ENST00000474835 PNMA8AQ86V59 439 aaPredicted RBP4.3□□□□□ -1.72
USP16-205ENST00000474835 LRRC6Q86X45 466 aa4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms