RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 WDR6Q9NNW5 1121 aaKnown RBP9.31□□□□□ -0.92
COL6A3-210ENST00000473258 GRID1Q9ULK0 1009 aa9.31□□□□□ -0.92
COL6A3-210ENST00000473258 EFR3BQ9Y2G0 817 aa9.31□□□□□ -0.92
COL6A3-210ENST00000473258 LOC100506127A0A0U1RQW1 187 aa9.31□□□□□ -0.92
COL6A3-210ENST00000473258 IQSEC1Q6DN90 963 aa9.31□□□□□ -0.92
COL6A3-210ENST00000473258 EFL1Q7Z2Z2 1120 aaKnown RBP9.31□□□□□ -0.92
COL6A3-210ENST00000473258 NET1Q7Z628 596 aaPredicted RBP9.31□□□□□ -0.92
COL6A3-210ENST00000473258 RHPN2Q8IUC4 686 aa9.31□□□□□ -0.92
COL6A3-210ENST00000473258 OR5J2Q8NH18 312 aa9.31□□□□□ -0.92
COL6A3-210ENST00000473258 PYDC1Q8WXC3 89 aa9.31□□□□□ -0.92
COL6A3-210ENST00000473258 TCEAL3Q969E4 200 aa9.31□□□□□ -0.92
COL6A3-210ENST00000473258 ERLEC1Q96DZ1 483 aa9.31□□□□□ -0.92
COL6A3-210ENST00000473258 ZNF496Q96IT1 587 aaPredicted RBP9.31□□□□□ -0.92
COL6A3-210ENST00000473258 DMRTB1Q96MA1 342 aa9.31□□□□□ -0.92
COL6A3-210ENST00000473258 AP1S3Q96PC3 154 aa9.31□□□□□ -0.92
COL6A3-210ENST00000473258 S100A13Q99584 98 aa9.31□□□□□ -0.92
COL6A3-210ENST00000473258 STK32BQ9NY57 414 aa9.31□□□□□ -0.92
COL6A3-210ENST00000473258 DENND2AQ9ULE3 1009 aa9.31□□□□□ -0.92
COL6A3-210ENST00000473258 SLC9A8Q9Y2E8 581 aa9.31□□□□□ -0.92
COL6A3-210ENST00000473258 PDS5AQ29RF7 1337 aaKnown RBP9.31□□□□□ -0.92
COL6A3-210ENST00000473258 OR14I1A6ND48 311 aa9.31□□□□□ -0.92
COL6A3-210ENST00000473258 SERPINA1P01009 418 aa9.31□□□□□ -0.92
COL6A3-210ENST00000473258 PENKP01210 267 aaPredicted RBP9.31□□□□□ -0.92
COL6A3-210ENST00000473258 SNRPAP09012 282 aaKnown RBP9.31□□□□□ -0.92
COL6A3-210ENST00000473258 MAGP20916 626 aa9.31□□□□□ -0.92
COL6A3-210ENST00000473258 HALP42357 657 aa9.31□□□□□ -0.92
COL6A3-210ENST00000473258 MYBPC1Q00872 1141 aa9.31□□□□□ -0.92
COL6A3-210ENST00000473258 PICALMQ13492 652 aa9.31□□□□□ -0.92
COL6A3-210ENST00000473258 C4orf22Q6V702 233 aa9.31□□□□□ -0.92
COL6A3-210ENST00000473258 C8orf58Q8NAV2 365 aa9.31□□□□□ -0.92
COL6A3-210ENST00000473258 KYQ8NBH2 561 aa9.31□□□□□ -0.92
COL6A3-210ENST00000473258 PTPRN2Q92932 1015 aa9.31□□□□□ -0.92
COL6A3-210ENST00000473258 TBRG4Q969Z0 631 aaKnown RBP eCLIP9.31□□□□□ -0.92
COL6A3-210ENST00000473258 DSCC1Q9BVC3 393 aa9.31□□□□□ -0.92
COL6A3-210ENST00000473258 GPCPD1Q9NPB8 672 aa9.31□□□□□ -0.92
COL6A3-210ENST00000473258 CYP26B1Q9NR63 512 aa9.31□□□□□ -0.92
COL6A3-210ENST00000473258 VPS45Q9NRW7 570 aa9.31□□□□□ -0.92
COL6A3-210ENST00000473258 RDH8Q9NYR8 311 aa9.31□□□□□ -0.92
COL6A3-210ENST00000473258 HESX1Q9UBX0 185 aa9.31□□□□□ -0.92
COL6A3-210ENST00000473258 ZNF225Q9UK10 706 aa9.31□□□□□ -0.92
COL6A3-210ENST00000473258 SNX6Q9UNH7 406 aa9.31□□□□□ -0.92
COL6A3-210ENST00000473258 INSRP06213 1382 aa9.31□□□□□ -0.92
COL6A3-210ENST00000473258 FAM240BA0A1B0GVZ2 78 aa9.3□□□□□ -0.92
COL6A3-210ENST00000473258 KCNK1O00180 336 aa9.3□□□□□ -0.92
COL6A3-210ENST00000473258 ATP6V1B2P21281 511 aa9.3□□□□□ -0.92
COL6A3-210ENST00000473258 ZAP70P43403 619 aa9.3□□□□□ -0.92
COL6A3-210ENST00000473258 KCNK10P57789 538 aa9.3□□□□□ -0.92
COL6A3-210ENST00000473258 GSTO1P78417 241 aa9.3□□□□□ -0.92
COL6A3-210ENST00000473258 ZNF772Q68DY9 489 aaPredicted RBP9.3□□□□□ -0.92
COL6A3-210ENST00000473258 ABTB2Q8N961 1025 aa9.3□□□□□ -0.92
COL6A3-210ENST00000473258 SMYD1Q8NB12 490 aa9.3□□□□□ -0.92
COL6A3-210ENST00000473258 USP38Q8NB14 1042 aa9.3□□□□□ -0.92
COL6A3-210ENST00000473258 KBTBD7Q8WVZ9 684 aa9.3□□□□□ -0.92
COL6A3-210ENST00000473258 CASKIN2Q8WXE0 1202 aa9.3□□□□□ -0.92
COL6A3-210ENST00000473258 CIDECQ96AQ7 238 aaPredicted RBP9.3□□□□□ -0.92
COL6A3-210ENST00000473258 MAGEE1Q9HCI5 957 aa9.3□□□□□ -0.92
COL6A3-210ENST00000473258 TUBGCP4Q9UGJ1 667 aa9.3□□□□□ -0.92
COL6A3-210ENST00000473258 NCAPD3P42695 1498 aa9.3□□□□□ -0.92
COL6A3-210ENST00000473258 YEATS2Q9ULM3 1422 aa9.3□□□□□ -0.92
COL6A3-210ENST00000473258 LOC110117498-PIK3R3F6TDL0 507 aa9.3□□□□□ -0.92
COL6A3-210ENST00000473258 PIK3CDO00329 1044 aa9.3□□□□□ -0.92
COL6A3-210ENST00000473258 FCHO1O14526 889 aa9.3□□□□□ -0.92
COL6A3-210ENST00000473258 MAGEA6P43360 314 aa9.3□□□□□ -0.92
COL6A3-210ENST00000473258 PSMD4P55036 377 aaKnown RBP9.3□□□□□ -0.92
COL6A3-210ENST00000473258 HPCAP84074 193 aa9.3□□□□□ -0.92
COL6A3-210ENST00000473258 ZNF45Q02386 682 aa9.3□□□□□ -0.92
COL6A3-210ENST00000473258 PTK7Q13308 1070 aa9.3□□□□□ -0.92
COL6A3-210ENST00000473258 RAD9BQ6WBX8 426 aa9.3□□□□□ -0.92
COL6A3-210ENST00000473258 C1orf54Q8WWF1 131 aa9.3□□□□□ -0.92
COL6A3-210ENST00000473258 SUGT1Q9Y2Z0 365 aa9.3□□□□□ -0.92
COL6A3-210ENST00000473258 H3BM21 787 aa9.3□□□□□ -0.92
COL6A3-210ENST00000473258 NCAM2O15394 837 aa9.3□□□□□ -0.92
COL6A3-210ENST00000473258 PTCD1O75127 700 aaKnown RBP9.3□□□□□ -0.92
COL6A3-210ENST00000473258 OR7A10O76100 309 aa9.3□□□□□ -0.92
COL6A3-210ENST00000473258 ADAMTS2O95450 1211 aa9.3□□□□□ -0.92
COL6A3-210ENST00000473258 LDLRP01130 860 aa9.3□□□□□ -0.92
COL6A3-210ENST00000473258 DLATP10515 647 aaKnown RBP9.3□□□□□ -0.92
COL6A3-210ENST00000473258 PDHA2P29803 388 aa9.3□□□□□ -0.92
COL6A3-210ENST00000473258 TECP42680 631 aa9.3□□□□□ -0.92
COL6A3-210ENST00000473258 PKN2Q16513 984 aaKnown RBP9.3□□□□□ -0.92
COL6A3-210ENST00000473258 TYW3Q6IPR3 259 aaKnown RBP9.3□□□□□ -0.92
COL6A3-210ENST00000473258 PRR5LQ6MZQ0 368 aa9.3□□□□□ -0.92
COL6A3-210ENST00000473258 ASCC1Q8N9N2 400 aaKnown RBP9.3□□□□□ -0.92
COL6A3-210ENST00000473258 CENPIQ92674 756 aaPredicted RBP9.3□□□□□ -0.92
COL6A3-210ENST00000473258 CNKSR1Q969H4 720 aa9.3□□□□□ -0.92
COL6A3-210ENST00000473258 CENPTQ96BT3 561 aa9.3□□□□□ -0.92
COL6A3-210ENST00000473258 ARL5BQ96KC2 179 aa9.3□□□□□ -0.92
COL6A3-210ENST00000473258 HGH1Q9BTY7 390 aa9.3□□□□□ -0.92
COL6A3-210ENST00000473258 BRD7Q9NPI1 651 aa9.3□□□□□ -0.92
COL6A3-210ENST00000473258 ETNK2Q9NVF9 386 aa9.3□□□□□ -0.92
COL6A3-210ENST00000473258 HSPBP1Q9NZL4 362 aa9.3□□□□□ -0.92
COL6A3-210ENST00000473258 XPO7Q9UIA9 1087 aaKnown RBP9.3□□□□□ -0.92
COL6A3-210ENST00000473258 CENPBD1B2RD01 187 aa9.3□□□□□ -0.92
COL6A3-210ENST00000473258 ZBTB24O43167 697 aaPredicted RBP9.3□□□□□ -0.92
COL6A3-210ENST00000473258 KCNQ3O43525 872 aa9.3□□□□□ -0.92
COL6A3-210ENST00000473258 CLTBP09497 229 aa9.3□□□□□ -0.92
COL6A3-210ENST00000473258 POLR2MP0CAP2 368 aa9.3□□□□□ -0.92
COL6A3-210ENST00000473258 RPS2P15880 293 aaKnown RBP9.3□□□□□ -0.92
COL6A3-210ENST00000473258 STIP1P31948 543 aaKnown RBP9.3□□□□□ -0.92
COL6A3-210ENST00000473258 PRIM2P49643 509 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms