RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 MYL6P60660 151 aa16.8■□□□□ 0.28
CCDC88B-205ENST00000472524 CYP27A1Q02318 531 aa16.8■□□□□ 0.28
CCDC88B-205ENST00000472524 BIRC3Q13489 604 aa16.8■□□□□ 0.28
CCDC88B-205ENST00000472524 GAS6Q14393 721 aa16.8■□□□□ 0.28
CCDC88B-205ENST00000472524 WDR72Q3MJ13 1102 aa16.8■□□□□ 0.28
CCDC88B-205ENST00000472524 TXNDC8Q6A555 127 aa16.8■□□□□ 0.28
CCDC88B-205ENST00000472524 CELF5Q8N6W0 485 aaKnown RBP16.8■□□□□ 0.28
CCDC88B-205ENST00000472524 OR6B3Q8NGW1 331 aa16.8■□□□□ 0.28
CCDC88B-205ENST00000472524 FAM126AQ9BYI3 521 aaPredicted RBP16.8■□□□□ 0.28
CCDC88B-205ENST00000472524 GDPD2Q9HCC8 539 aa16.8■□□□□ 0.28
CCDC88B-205ENST00000472524 CRTAC1Q9NQ79 661 aa16.8■□□□□ 0.28
CCDC88B-205ENST00000472524 GTSE1Q9NYZ3 720 aa16.8■□□□□ 0.28
CCDC88B-205ENST00000472524 UXTQ9UBK9 157 aaPredicted RBP16.8■□□□□ 0.28
CCDC88B-205ENST00000472524 NXF1Q9UBU9 619 aaKnown RBP16.8■□□□□ 0.28
CCDC88B-205ENST00000472524 LRRIQ3A6PVS8 624 aaPredicted RBP16.79■□□□□ 0.28
CCDC88B-205ENST00000472524 MYL1P05976 194 aa16.79■□□□□ 0.28
CCDC88B-205ENST00000472524 BDNFP23560 247 aa16.79■□□□□ 0.28
CCDC88B-205ENST00000472524 GNL1P36915 607 aaPredicted RBP16.79■□□□□ 0.28
CCDC88B-205ENST00000472524 SATB1Q01826 763 aa16.79■□□□□ 0.28
CCDC88B-205ENST00000472524 TNK2Q07912 1038 aa16.79■□□□□ 0.28
CCDC88B-205ENST00000472524 LPAL2Q16609 132 aa16.79■□□□□ 0.28
CCDC88B-205ENST00000472524 MDH1BQ5I0G3 518 aa16.79■□□□□ 0.28
CCDC88B-205ENST00000472524 MAMSTRQ6ZN01 415 aa16.79■□□□□ 0.28
CCDC88B-205ENST00000472524 SECISBP2LQ93073 1101 aaKnown RBP16.79■□□□□ 0.28
CCDC88B-205ENST00000472524 CCDC47Q96A33 483 aaKnown RBP16.79■□□□□ 0.28
CCDC88B-205ENST00000472524 TRMT2BQ96GJ1 504 aaKnown RBP16.79■□□□□ 0.28
CCDC88B-205ENST00000472524 SCAND2PQ9GZW5 306 aaPredicted RBP16.79■□□□□ 0.28
CCDC88B-205ENST00000472524 KCTD10Q9H3F6 313 aa16.79■□□□□ 0.28
CCDC88B-205ENST00000472524 GOLPH3LQ9H4A5 285 aa16.79■□□□□ 0.28
CCDC88B-205ENST00000472524 C8orf33Q9H7E9 229 aaPredicted RBP16.79■□□□□ 0.28
CCDC88B-205ENST00000472524 TRPC7Q9HCX4 862 aa16.79■□□□□ 0.28
CCDC88B-205ENST00000472524 PARD6AQ9NPB6 346 aa16.79■□□□□ 0.28
CCDC88B-205ENST00000472524 RBM12Q9NTZ6 932 aaKnown RBP16.79■□□□□ 0.28
CCDC88B-205ENST00000472524 ZMYM5Q9UJ78 669 aa16.79■□□□□ 0.28
CCDC88B-205ENST00000472524 CCL26Q9Y258 94 aa16.79■□□□□ 0.28
CCDC88B-205ENST00000472524 NME7Q9Y5B8 376 aa16.79■□□□□ 0.28
CCDC88B-205ENST00000472524 CEP250Q9BV73 2442 aa16.79■□□□□ 0.28
CCDC88B-205ENST00000472524 NCOR2Q9Y618 2525 aa16.78■□□□□ 0.28
CCDC88B-205ENST00000472524 FAM237AA0A1B0GTK4 181 aa16.78■□□□□ 0.28
CCDC88B-205ENST00000472524 SPECC1L-ADORA2AF8WAN1 911 aa16.78■□□□□ 0.28
CCDC88B-205ENST00000472524 TACC1O75410 805 aa16.78■□□□□ 0.28
CCDC88B-205ENST00000472524 NR3C1P04150 777 aa16.78■□□□□ 0.28
CCDC88B-205ENST00000472524 GRIK1P39086 918 aa16.78■□□□□ 0.28
CCDC88B-205ENST00000472524 MAGEA11P43364 429 aa16.78■□□□□ 0.28
CCDC88B-205ENST00000472524 CCR3P51677 355 aa16.78■□□□□ 0.28
CCDC88B-205ENST00000472524 PLCB2Q00722 1185 aa16.78■□□□□ 0.28
CCDC88B-205ENST00000472524 MAPRE1Q15691 268 aaKnown RBP16.78■□□□□ 0.28
CCDC88B-205ENST00000472524 WDR44Q5JSH3 913 aa16.78■□□□□ 0.28
CCDC88B-205ENST00000472524 TDRD10Q5VZ19 366 aaKnown RBP16.78■□□□□ 0.28
CCDC88B-205ENST00000472524 MON1AQ86VX9 555 aa16.78■□□□□ 0.28
CCDC88B-205ENST00000472524 GPR161Q8N6U8 529 aaKnown RBP16.78■□□□□ 0.28
CCDC88B-205ENST00000472524 TTC16Q8NEE8 873 aa16.78■□□□□ 0.28
CCDC88B-205ENST00000472524 PARD3BQ8TEW8 1205 aa16.78■□□□□ 0.28
CCDC88B-205ENST00000472524 USP13Q92995 863 aaPredicted RBP16.78■□□□□ 0.28
CCDC88B-205ENST00000472524 SYAP1Q96A49 352 aaPredicted RBP16.78■□□□□ 0.28
CCDC88B-205ENST00000472524 ELMO3Q96BJ8 720 aa16.78■□□□□ 0.28
CCDC88B-205ENST00000472524 MSANTD3Q96H12 275 aa16.78■□□□□ 0.28
CCDC88B-205ENST00000472524 PCED1BQ96HM7 432 aa16.78■□□□□ 0.28
CCDC88B-205ENST00000472524 IER2Q9BTL4 223 aa16.78■□□□□ 0.28
CCDC88B-205ENST00000472524 DPEP3Q9H4B8 488 aa16.78■□□□□ 0.28
CCDC88B-205ENST00000472524 DMAC2Q9NW81 257 aa16.78■□□□□ 0.28
CCDC88B-205ENST00000472524 THG1LQ9NWX6 298 aaKnown RBP16.78■□□□□ 0.28
CCDC88B-205ENST00000472524 USP18Q9UMW8 372 aa16.78■□□□□ 0.28
CCDC88B-205ENST00000472524 MYO16Q9Y6X6 1858 aa16.78■□□□□ 0.28
CCDC88B-205ENST00000472524 A0A1W2PQ27 194 aa16.77■□□□□ 0.28
CCDC88B-205ENST00000472524 A0A1W2PQ64 194 aa16.77■□□□□ 0.28
CCDC88B-205ENST00000472524 A0A1W2PQD8 194 aa16.77■□□□□ 0.28
CCDC88B-205ENST00000472524 PDXKO00764 312 aa16.77■□□□□ 0.28
CCDC88B-205ENST00000472524 ANXA13P27216 316 aa16.77■□□□□ 0.28
CCDC88B-205ENST00000472524 ATICP31939 592 aa16.77■□□□□ 0.28
CCDC88B-205ENST00000472524 CTHP32929 405 aa16.77■□□□□ 0.28
CCDC88B-205ENST00000472524 RAP1GAPP47736 663 aa16.77■□□□□ 0.28
CCDC88B-205ENST00000472524 CXCL12P48061 93 aa16.77■□□□□ 0.28
CCDC88B-205ENST00000472524 ATXN1P54253 815 aaKnown RBP16.77■□□□□ 0.28
CCDC88B-205ENST00000472524 NRLP54845 237 aa16.77■□□□□ 0.28
CCDC88B-205ENST00000472524 DMWDQ09019 674 aa16.77■□□□□ 0.28
CCDC88B-205ENST00000472524 DPYDQ12882 1025 aa16.77■□□□□ 0.28
CCDC88B-205ENST00000472524 PPP2R5DQ14738 602 aa16.77■□□□□ 0.28
CCDC88B-205ENST00000472524 ZNF699Q32M78 642 aa16.77■□□□□ 0.28
CCDC88B-205ENST00000472524 CEP135Q66GS9 1140 aa16.77■□□□□ 0.28
CCDC88B-205ENST00000472524 TXNDC11Q6PKC3 985 aa16.77■□□□□ 0.28
CCDC88B-205ENST00000472524 VSTM1Q6UX27 236 aa16.77■□□□□ 0.28
CCDC88B-205ENST00000472524 SCARA5Q6ZMJ2 495 aa16.77■□□□□ 0.28
CCDC88B-205ENST00000472524 KRBA2Q6ZNG9 492 aa16.77■□□□□ 0.28
CCDC88B-205ENST00000472524 Q6ZS52 159 aa16.77■□□□□ 0.28
CCDC88B-205ENST00000472524 SLC9A9Q8IVB4 645 aa16.77■□□□□ 0.28
CCDC88B-205ENST00000472524 MYCBPAPQ8TBZ2 947 aa16.77■□□□□ 0.28
CCDC88B-205ENST00000472524 MYRFLQ96LU7 910 aa16.77■□□□□ 0.28
CCDC88B-205ENST00000472524 XYLT2Q9H1B5 865 aa16.77■□□□□ 0.28
CCDC88B-205ENST00000472524 SMYD3Q9H7B4 428 aa16.77■□□□□ 0.28
CCDC88B-205ENST00000472524 KIF9Q9HAQ2 790 aa16.77■□□□□ 0.28
CCDC88B-205ENST00000472524 GKN1Q9NS71 199 aa16.77■□□□□ 0.28
CCDC88B-205ENST00000472524 TDP1Q9NUW8 608 aa16.77■□□□□ 0.28
CCDC88B-205ENST00000472524 MYOFQ9NZM1 2061 aa16.77■□□□□ 0.27
CCDC88B-205ENST00000472524 A8MXQ7 604 aa16.76■□□□□ 0.27
CCDC88B-205ENST00000472524 CALUO43852 315 aaPredicted RBP16.76■□□□□ 0.27
CCDC88B-205ENST00000472524 STAU1O95793 577 aaKnown RBP16.76■□□□□ 0.27
CCDC88B-205ENST00000472524 CKMP06732 381 aa16.76■□□□□ 0.27
CCDC88B-205ENST00000472524 PTPN1P18031 435 aaKnown RBP16.76■□□□□ 0.27
CCDC88B-205ENST00000472524 AP3M2P53677 418 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms