RNA–Protein interactions for RNA: ENST00000471702.2

NPHP3-ACAD11-201, Transcript of NPHP3-ACAD11 readthrough (NMD candidate), humanhuman

TSL 2 BASIC

Gene NPHP3-ACAD11, Length 7,784 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11-201ENST00000471702 KIF21AQ7Z4S6 1674 aa13.73□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 CPSF4O95639 269 aaKnown RBP13.73□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 POLBP06746 335 aa13.73□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 VCLP18206 1134 aa13.73□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 DDI2Q5TDH0 399 aa13.73□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 S100A13Q99584 98 aa13.73□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 CYP4F12Q9HCS2 524 aa13.73□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 SCN3BQ9NY72 215 aa13.73□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 MRPL39Q9NYK5 338 aaKnown RBP13.73□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 NEU2Q9Y3R4 380 aa13.73□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 C2orf81A6NN90 581 aa13.73□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 A8MX80 341 aa13.73□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 AP3D1O14617 1153 aa13.73□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 ARF3P61204 181 aaPredicted RBP13.73□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 ARF1P84077 181 aaKnown RBP13.73□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 SPIRE2Q8WWL2 714 aa13.73□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 CLIP3Q96DZ5 547 aa13.73□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 SH3GL3Q99963 347 aa13.73□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 CAAP1Q9H8G2 361 aa13.73□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.73□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 TRIM10Q9UDY6 481 aa13.73□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 DCDC2CA8MYV0 355 aa13.73□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 TEX33O43247 280 aa13.73□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 STIP1P31948 543 aaKnown RBP13.73□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 CPA2P48052 419 aa13.73□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 SLC11A2P49281 568 aa13.73□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 BRINP3Q76B58 766 aa13.73□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 SCFD2Q8WU76 684 aa13.73□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 ZNF669Q96BR6 464 aaPredicted RBP13.73□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 RBM15Q96T37 977 aaKnown RBP eCLIP13.73□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 ERAP1Q9NZ08 941 aa13.73□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 TMEM2Q9UHN6 1383 aa13.73□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 TRIM64BA6NI03 449 aa13.73□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 SH3BGRLO75368 114 aa13.73□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 DEAF1O75398 565 aaPredicted RBP13.73□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 AP1G2O75843 785 aa13.73□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 KRT75O95678 551 aa13.73□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 ACO1P21399 889 aaKnown RBP13.73□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 FGFR2P21802 821 aa13.73□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 TRPC4APQ8TEL6 797 aa13.73□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 XPO6Q96QU8 1125 aaKnown RBP13.73□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 STAP2Q9UGK3 403 aa13.73□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 H7C1W4 665 aa13.73□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 M0QYT0 321 aa13.73□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 MRPS31Q92665 395 aaKnown RBP13.73□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 ZNRF3Q9ULT6 936 aa13.73□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 GTF2H1P32780 548 aa13.73□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 OLFML2BQ68BL8 750 aa13.73□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 GPAT2Q6NUI2 795 aa13.73□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 ZSCAN2Q7Z7L9 614 aaPredicted RBP13.73□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 PRPF39Q86UA1 669 aaKnown RBP13.73□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 LCMT1Q9UIC8 334 aa13.73□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 RBM7Q9Y580 266 aaKnown RBP13.73□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 HMGXB3Q12766 1538 aa13.72□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 ATP6V1B1P15313 513 aa13.72□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 SGSM1Q2NKQ1 1148 aa13.72□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 SYTL1Q8IYJ3 562 aa13.72□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 RCOR2Q8IZ40 523 aa13.72□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 DPP10Q8N608 796 aa13.72□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 PSMD3O43242 534 aa13.72□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 CKBP12277 381 aa13.72□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 HSPA9P38646 679 aaKnown RBP13.72□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 NPEPPSP55786 919 aa13.72□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 PTK7Q13308 1070 aa13.72□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 RBBP8NLQ8NC74 664 aaPredicted RBP13.72□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 SEPT1Q8WYJ6 367 aa13.72□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 ROGDIQ9GZN7 287 aa13.72□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 TAF4O00268 1085 aa13.72□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 VTNP04004 478 aa13.72□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 GLRBP48167 497 aa13.72□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 NFIL3Q16649 462 aa13.72□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 SCARA3Q6AZY7 606 aa13.72□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 ULK3Q6PHR2 472 aa13.72□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 NEK10Q6ZWH5 1172 aa13.72□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 DCP1BQ8IZD4 617 aaKnown RBP13.72□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 FAM71DQ8N9W8 422 aa13.72□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 FAM129BQ96TA1 746 aa13.72□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 LNPEPQ9UIQ6 1025 aa13.72□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 IPPQ9Y573 584 aa13.72□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 RBMXL2O75526 392 aaKnown RBP13.72□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 SRP72O76094 671 aaKnown RBP13.72□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 CES1P23141 567 aa13.72□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 CCR4P51679 360 aa13.72□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 UGP2Q16851 508 aa13.72□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 RTL3Q8N8U3 475 aaKnown RBP13.72□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 RFFLQ8WZ73 363 aa13.72□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 TUBGCP3Q96CW5 907 aa13.72□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 C19orf60Q96EN9 201 aa13.72□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 SERAC1Q96JX3 654 aa13.72□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 MGAT4DA6NG13 374 aa13.72□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 VWA5AO00534 786 aa13.72□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 GSSP48637 474 aa13.72□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 FCGRTP55899 365 aa13.72□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 PIGHQ14442 188 aaPredicted RBP13.72□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 SUPT7LO94864 414 aa13.72□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 CPB2Q96IY4 423 aa13.72□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 POLG2Q9UHN1 485 aa13.72□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 XKR3Q5GH77 459 aa13.71□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 NARS2Q96I59 477 aaKnown RBP13.71□□□□□ -0.21
NPHP3-ACAD11-201ENST00000471702 TRIM51Q9BSJ1 452 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms