RNA–Protein interactions for RNA: ENST00000471037.1

SF3A1-206, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 3

Gene SF3A1, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-206ENST00000471037 EIF3DO15371 548 aaKnown RBP eCLIP9.73□□□□□ -0.85
SF3A1-206ENST00000471037 RPP40O75818 363 aaKnown RBP9.73□□□□□ -0.85
SF3A1-206ENST00000471037 F11P03951 625 aa9.73□□□□□ -0.85
SF3A1-206ENST00000471037 HMGA1P17096 107 aaKnown RBP9.73□□□□□ -0.85
SF3A1-206ENST00000471037 ERCC5P28715 1186 aaPredicted RBP9.73□□□□□ -0.85
SF3A1-206ENST00000471037 PMLP29590 882 aa9.73□□□□□ -0.85
SF3A1-206ENST00000471037 AVPR1AP37288 418 aa9.73□□□□□ -0.85
SF3A1-206ENST00000471037 AMPD2Q01433 879 aa9.73□□□□□ -0.85
SF3A1-206ENST00000471037 GRSF1Q12849 480 aaKnown RBP eCLIP9.73□□□□□ -0.85
SF3A1-206ENST00000471037 RUNX3Q13761 415 aa9.73□□□□□ -0.85
SF3A1-206ENST00000471037 ZNF268Q14587 947 aaPredicted RBP9.73□□□□□ -0.85
SF3A1-206ENST00000471037 TAF12Q16514 161 aa9.73□□□□□ -0.85
SF3A1-206ENST00000471037 AASDHQ4L235 1098 aaPredicted RBP9.73□□□□□ -0.85
SF3A1-206ENST00000471037 PLA2G2CQ5R387 149 aa9.73□□□□□ -0.85
SF3A1-206ENST00000471037 IL31Q6EBC2 164 aa9.73□□□□□ -0.85
SF3A1-206ENST00000471037 SLFN12LQ6IEE8 588 aa9.73□□□□□ -0.85
SF3A1-206ENST00000471037 CACNA2D4Q7Z3S7 1137 aa9.73□□□□□ -0.85
SF3A1-206ENST00000471037 LRRTM3Q86VH5 581 aa9.73□□□□□ -0.85
SF3A1-206ENST00000471037 METTL23Q86XA0 190 aa9.73□□□□□ -0.85
SF3A1-206ENST00000471037 NT5DC4Q86YG4 428 aa9.73□□□□□ -0.85
SF3A1-206ENST00000471037 DCP1BQ8IZD4 617 aaKnown RBP9.73□□□□□ -0.85
SF3A1-206ENST00000471037 GUF1Q8N442 669 aaKnown RBP9.73□□□□□ -0.85
SF3A1-206ENST00000471037 CAMKK1Q8N5S9 505 aa9.73□□□□□ -0.85
SF3A1-206ENST00000471037 C12orf50Q8NA57 414 aaPredicted RBP9.73□□□□□ -0.85
SF3A1-206ENST00000471037 USP13Q92995 863 aaPredicted RBP9.73□□□□□ -0.85
SF3A1-206ENST00000471037 HVCN1Q96D96 273 aa9.73□□□□□ -0.85
SF3A1-206ENST00000471037 DHTKD1Q96HY7 919 aaPredicted RBP9.73□□□□□ -0.85
SF3A1-206ENST00000471037 ZC3H10Q96K80 434 aaKnown RBP9.73□□□□□ -0.85
SF3A1-206ENST00000471037 SMG9Q9H0W8 520 aaKnown RBP9.73□□□□□ -0.85
SF3A1-206ENST00000471037 ARRDC1-AS1Q9H2J1 176 aa9.73□□□□□ -0.85
SF3A1-206ENST00000471037 SLC39A2Q9NP94 309 aa9.73□□□□□ -0.85
SF3A1-206ENST00000471037 GKN1Q9NS71 199 aa9.73□□□□□ -0.85
SF3A1-206ENST00000471037 DPP3Q9NY33 737 aa9.73□□□□□ -0.85
SF3A1-206ENST00000471037 CCL26Q9Y258 94 aa9.73□□□□□ -0.85
SF3A1-206ENST00000471037 ANK1P16157 1881 aa9.72□□□□□ -0.85
SF3A1-206ENST00000471037 MAP1BP46821 2468 aaKnown RBP9.72□□□□□ -0.85
SF3A1-206ENST00000471037 OTOL1A6NHN0 477 aaPredicted RBP9.72□□□□□ -0.85
SF3A1-206ENST00000471037 KPNA7A9QM74 516 aa9.72□□□□□ -0.85
SF3A1-206ENST00000471037 PPP1R3GB7ZBB8 358 aa9.72□□□□□ -0.85
SF3A1-206ENST00000471037 ANKRD63C9JTQ0 380 aa9.72□□□□□ -0.85
SF3A1-206ENST00000471037 RNF40O75150 1001 aa9.72□□□□□ -0.85
SF3A1-206ENST00000471037 GCNT3O95395 438 aa9.72□□□□□ -0.85
SF3A1-206ENST00000471037 CSH1P0DML2 217 aa9.72□□□□□ -0.85
SF3A1-206ENST00000471037 CSH2P0DML3 217 aa9.72□□□□□ -0.85
SF3A1-206ENST00000471037 DRD1P21728 446 aa9.72□□□□□ -0.85
SF3A1-206ENST00000471037 NMT1P30419 496 aaKnown RBP9.72□□□□□ -0.85
SF3A1-206ENST00000471037 PRCPP42785 496 aa9.72□□□□□ -0.85
SF3A1-206ENST00000471037 ACOT2P49753 483 aa9.72□□□□□ -0.85
SF3A1-206ENST00000471037 ZNF165P49910 485 aa9.72□□□□□ -0.85
SF3A1-206ENST00000471037 SHC2P98077 582 aa9.72□□□□□ -0.85
SF3A1-206ENST00000471037 BFSP1Q12934 665 aa9.72□□□□□ -0.85
SF3A1-206ENST00000471037 PAK1Q13153 545 aa9.72□□□□□ -0.85
SF3A1-206ENST00000471037 SF3A2Q15428 464 aaKnown RBP9.72□□□□□ -0.85
SF3A1-206ENST00000471037 NFE2Q16621 373 aaPredicted RBP9.72□□□□□ -0.85
SF3A1-206ENST00000471037 BMT2Q1RMZ1 405 aa9.72□□□□□ -0.85
SF3A1-206ENST00000471037 SV2CQ496J9 727 aa9.72□□□□□ -0.85
SF3A1-206ENST00000471037 FBXO43Q4G163 708 aa9.72□□□□□ -0.85
SF3A1-206ENST00000471037 WSCD1Q658N2 575 aa9.72□□□□□ -0.85
SF3A1-206ENST00000471037 TRIM68Q6AZZ1 485 aa9.72□□□□□ -0.85
SF3A1-206ENST00000471037 FOXR2Q6PJQ5 311 aa9.72□□□□□ -0.85
SF3A1-206ENST00000471037 C11orf57Q6ZUT1 292 aaPredicted RBP9.72□□□□□ -0.85
SF3A1-206ENST00000471037 EPM2AIP1Q7L775 607 aaPredicted RBP9.72□□□□□ -0.85
SF3A1-206ENST00000471037 ZNF720Q7Z2F6 126 aa9.72□□□□□ -0.85
SF3A1-206ENST00000471037 KBTBD6Q86V97 674 aa9.72□□□□□ -0.85
SF3A1-206ENST00000471037 MON1AQ86VX9 555 aa9.72□□□□□ -0.85
SF3A1-206ENST00000471037 EFCAB13Q8IY85 973 aa9.72□□□□□ -0.85
SF3A1-206ENST00000471037 SMYD4Q8IYR2 804 aaPredicted RBP9.72□□□□□ -0.85
SF3A1-206ENST00000471037 MAB21L3Q8N8X9 362 aa9.72□□□□□ -0.85
SF3A1-206ENST00000471037 RIN3Q8TB24 985 aa9.72□□□□□ -0.85
SF3A1-206ENST00000471037 GIPC2Q8TF65 315 aa9.72□□□□□ -0.85
SF3A1-206ENST00000471037 HPS3Q969F9 1004 aa9.72□□□□□ -0.85
SF3A1-206ENST00000471037 ZNF560Q96MR9 790 aa9.72□□□□□ -0.85
SF3A1-206ENST00000471037 EBF3Q9H4W6 596 aa9.72□□□□□ -0.85
SF3A1-206ENST00000471037 TDP1Q9NUW8 608 aa9.72□□□□□ -0.85
SF3A1-206ENST00000471037 ABI2Q9NYB9 513 aaPredicted RBP9.72□□□□□ -0.85
SF3A1-206ENST00000471037 TBC1D7Q9P0N9 293 aa9.72□□□□□ -0.85
SF3A1-206ENST00000471037 ANGPTL2Q9UKU9 493 aa9.72□□□□□ -0.85
SF3A1-206ENST00000471037 AGO2Q9UKV8 859 aaKnown RBP9.72□□□□□ -0.85
SF3A1-206ENST00000471037 SLC8A2Q9UPR5 921 aa9.72□□□□□ -0.85
SF3A1-206ENST00000471037 PCDHB5Q9Y5E4 795 aa9.72□□□□□ -0.85
SF3A1-206ENST00000471037 PCDHB13Q9Y5F0 798 aa9.72□□□□□ -0.85
SF3A1-206ENST00000471037 SCN1AP35498 2009 aa9.72□□□□□ -0.85
SF3A1-206ENST00000471037 CHD8Q9HCK8 2581 aa9.71□□□□□ -0.85
SF3A1-206ENST00000471037 OBSL1O75147 1896 aa9.71□□□□□ -0.85
SF3A1-206ENST00000471037 BICDL2A1A5D9 508 aa9.71□□□□□ -0.86
SF3A1-206ENST00000471037 SMTNL1A8MU46 457 aa9.71□□□□□ -0.86
SF3A1-206ENST00000471037 TISP43B9A030 160 aa9.71□□□□□ -0.86
SF3A1-206ENST00000471037 AXIN1O15169 862 aa9.71□□□□□ -0.86
SF3A1-206ENST00000471037 TADA3O75528 432 aa9.71□□□□□ -0.86
SF3A1-206ENST00000471037 PPP1R37O75864 691 aa9.71□□□□□ -0.86
SF3A1-206ENST00000471037 IL18RAPO95256 599 aa9.71□□□□□ -0.86
SF3A1-206ENST00000471037 EGFP01133 1207 aa9.71□□□□□ -0.86
SF3A1-206ENST00000471037 CD44P16070 742 aaKnown RBP9.71□□□□□ -0.86
SF3A1-206ENST00000471037 MPLP40238 635 aa9.71□□□□□ -0.86
SF3A1-206ENST00000471037 PNPLA4P41247 253 aa9.71□□□□□ -0.86
SF3A1-206ENST00000471037 PXNP49023 591 aaPredicted RBP9.71□□□□□ -0.86
SF3A1-206ENST00000471037 CASP5P51878 434 aa9.71□□□□□ -0.86
SF3A1-206ENST00000471037 TSPY1Q01534 308 aa9.71□□□□□ -0.86
SF3A1-206ENST00000471037 PDGFRLQ15198 375 aa9.71□□□□□ -0.86
SF3A1-206ENST00000471037 ZC2HC1CQ53FD0 456 aaPredicted RBP9.71□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms