RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 TRPC7Q9HCX4 862 aa18.71■□□□□ 0.59
COL7A1-208ENST00000470076 PARD6AQ9NPB6 346 aa18.71■□□□□ 0.59
COL7A1-208ENST00000470076 C2orf42Q9NWW7 574 aa18.71■□□□□ 0.59
COL7A1-208ENST00000470076 RALGAPA1Q6GYQ0 2036 aa18.71■□□□□ 0.59
COL7A1-208ENST00000470076 PTPRDP23468 1912 aa18.7■□□□□ 0.58
COL7A1-208ENST00000470076 SPTBN2O15020 2390 aa18.7■□□□□ 0.58
COL7A1-208ENST00000470076 MED19A0JLT2 244 aaPredicted RBP18.7■□□□□ 0.58
COL7A1-208ENST00000470076 TGFB1I1O43294 461 aa18.7■□□□□ 0.58
COL7A1-208ENST00000470076 ATG13O75143 517 aa18.7■□□□□ 0.58
COL7A1-208ENST00000470076 DLATP10515 647 aaKnown RBP18.7■□□□□ 0.58
COL7A1-208ENST00000470076 ARSAP15289 507 aa18.7■□□□□ 0.58
COL7A1-208ENST00000470076 TNNI1P19237 187 aa18.7■□□□□ 0.58
COL7A1-208ENST00000470076 LMO2P25791 158 aa18.7■□□□□ 0.58
COL7A1-208ENST00000470076 PSMC1P62191 440 aaKnown RBP18.7■□□□□ 0.58
COL7A1-208ENST00000470076 EHHADHQ08426 723 aa18.7■□□□□ 0.58
COL7A1-208ENST00000470076 FSTL4Q6MZW2 842 aa18.7■□□□□ 0.58
COL7A1-208ENST00000470076 HS2ST1Q7LGA3 356 aa18.7■□□□□ 0.58
COL7A1-208ENST00000470076 WDR5BQ86VZ2 330 aa18.7■□□□□ 0.58
COL7A1-208ENST00000470076 CPA6Q8N4T0 437 aa18.7■□□□□ 0.58
COL7A1-208ENST00000470076 XXYLT1Q8NBI6 393 aa18.7■□□□□ 0.58
COL7A1-208ENST00000470076 RDH13Q8NBN7 331 aa18.7■□□□□ 0.58
COL7A1-208ENST00000470076 MYLPFQ96A32 169 aa18.7■□□□□ 0.58
COL7A1-208ENST00000470076 CHFRQ96EP1 664 aa18.7■□□□□ 0.58
COL7A1-208ENST00000470076 FNBP1Q96RU3 617 aa18.7■□□□□ 0.58
COL7A1-208ENST00000470076 MMS19Q96T76 1030 aa18.7■□□□□ 0.58
COL7A1-208ENST00000470076 CRTAC1Q9NQ79 661 aa18.7■□□□□ 0.58
COL7A1-208ENST00000470076 CDV3Q9UKY7 258 aaKnown RBP18.7■□□□□ 0.58
COL7A1-208ENST00000470076 ATG2BQ96BY7 2078 aa18.7■□□□□ 0.58
COL7A1-208ENST00000470076 POLR2DO15514 142 aaKnown RBP18.69■□□□□ 0.58
COL7A1-208ENST00000470076 FAM163BP0C2L3 166 aa18.69■□□□□ 0.58
COL7A1-208ENST00000470076 DRD1P21728 446 aa18.69■□□□□ 0.58
COL7A1-208ENST00000470076 PDE6CP51160 858 aa18.69■□□□□ 0.58
COL7A1-208ENST00000470076 SPEM2Q0P670 501 aa18.69■□□□□ 0.58
COL7A1-208ENST00000470076 USP4Q13107 963 aa18.69■□□□□ 0.58
COL7A1-208ENST00000470076 PSMD6Q15008 389 aa18.69■□□□□ 0.58
COL7A1-208ENST00000470076 ZNF77Q15935 545 aa18.69■□□□□ 0.58
COL7A1-208ENST00000470076 ARHGAP30Q7Z6I6 1101 aaPredicted RBP18.69■□□□□ 0.58
COL7A1-208ENST00000470076 OSCP1Q8WVF1 389 aa18.69■□□□□ 0.58
COL7A1-208ENST00000470076 SCFD1Q8WVM8 642 aa18.69■□□□□ 0.58
COL7A1-208ENST00000470076 SLC22A12Q96S37 553 aa18.69■□□□□ 0.58
COL7A1-208ENST00000470076 CYP2S1Q96SQ9 504 aa18.69■□□□□ 0.58
COL7A1-208ENST00000470076 CGRRF1Q99675 332 aa18.69■□□□□ 0.58
COL7A1-208ENST00000470076 DUS2Q9NX74 493 aaKnown RBP18.69■□□□□ 0.58
COL7A1-208ENST00000470076 EHD2Q9NZN4 543 aa18.69■□□□□ 0.58
COL7A1-208ENST00000470076 CGNQ9P2M7 1197 aaKnown RBP18.69■□□□□ 0.58
COL7A1-208ENST00000470076 SPAG17Q6Q759 2223 aa18.69■□□□□ 0.58
COL7A1-208ENST00000470076 CCDC163A0A0D9SF12 145 aa18.68■□□□□ 0.58
COL7A1-208ENST00000470076 CLIC2O15247 247 aa18.68■□□□□ 0.58
COL7A1-208ENST00000470076 TACC1O75410 805 aa18.68■□□□□ 0.58
COL7A1-208ENST00000470076 CST3P01034 146 aaPredicted RBP18.68■□□□□ 0.58
COL7A1-208ENST00000470076 PDGFRBP09619 1106 aa18.68■□□□□ 0.58
COL7A1-208ENST00000470076 ZSCAN22P10073 491 aaPredicted RBP18.68■□□□□ 0.58
COL7A1-208ENST00000470076 PFKLP17858 780 aa18.68■□□□□ 0.58
COL7A1-208ENST00000470076 BDNFP23560 247 aa18.68■□□□□ 0.58
COL7A1-208ENST00000470076 ANXA13P27216 316 aa18.68■□□□□ 0.58
COL7A1-208ENST00000470076 GJA4P35212 333 aa18.68■□□□□ 0.58
COL7A1-208ENST00000470076 GRIK1P39086 918 aa18.68■□□□□ 0.58
COL7A1-208ENST00000470076 IFNAR2P48551 515 aa18.68■□□□□ 0.58
COL7A1-208ENST00000470076 CYP2J2P51589 502 aa18.68■□□□□ 0.58
COL7A1-208ENST00000470076 ATXN1P54253 815 aaKnown RBP18.68■□□□□ 0.58
COL7A1-208ENST00000470076 CYP27A1Q02318 531 aa18.68■□□□□ 0.58
COL7A1-208ENST00000470076 CYP24A1Q07973 514 aa18.68■□□□□ 0.58
COL7A1-208ENST00000470076 SRSF5Q13243 272 aaKnown RBP18.68■□□□□ 0.58
COL7A1-208ENST00000470076 KCNB1Q14721 858 aa18.68■□□□□ 0.58
COL7A1-208ENST00000470076 FBXO43Q4G163 708 aa18.68■□□□□ 0.58
COL7A1-208ENST00000470076 DENND5BQ6ZUT9 1274 aa18.68■□□□□ 0.58
COL7A1-208ENST00000470076 CEP68Q76N32 757 aa18.68■□□□□ 0.58
COL7A1-208ENST00000470076 NELFCDQ8IXH7 590 aa18.68■□□□□ 0.58
COL7A1-208ENST00000470076 MYCBPAPQ8TBZ2 947 aa18.68■□□□□ 0.58
COL7A1-208ENST00000470076 ATP2A3Q93084 1043 aa18.68■□□□□ 0.58
COL7A1-208ENST00000470076 CCDC127Q96BQ5 260 aa18.68■□□□□ 0.58
COL7A1-208ENST00000470076 PCED1BQ96HM7 432 aa18.68■□□□□ 0.58
COL7A1-208ENST00000470076 P2RY13Q9BPV8 354 aa18.68■□□□□ 0.58
COL7A1-208ENST00000470076 SNX25Q9H3E2 840 aa18.68■□□□□ 0.58
COL7A1-208ENST00000470076 ECT2Q9H8V3 914 aa18.68■□□□□ 0.58
COL7A1-208ENST00000470076 FAM13BQ9NYF5 915 aa18.68■□□□□ 0.58
COL7A1-208ENST00000470076 GCNT4Q9P109 453 aa18.68■□□□□ 0.58
COL7A1-208ENST00000470076 HELZP42694 1942 aaKnown RBP18.68■□□□□ 0.58
COL7A1-208ENST00000470076 PVALEFA0A1B0GWK0 134 aa18.67■□□□□ 0.58
COL7A1-208ENST00000470076 TRIM66O15016 1216 aa18.67■□□□□ 0.58
COL7A1-208ENST00000470076 HSP90AA1P07900 732 aaKnown RBP18.67■□□□□ 0.58
COL7A1-208ENST00000470076 TCF3P15923 654 aa18.67■□□□□ 0.58
COL7A1-208ENST00000470076 HDCP19113 662 aa18.67■□□□□ 0.58
COL7A1-208ENST00000470076 GNL1P36915 607 aaPredicted RBP18.67■□□□□ 0.58
COL7A1-208ENST00000470076 ME1P48163 572 aa18.67■□□□□ 0.58
COL7A1-208ENST00000470076 GALK1P51570 392 aa18.67■□□□□ 0.58
COL7A1-208ENST00000470076 BMT2Q1RMZ1 405 aa18.67■□□□□ 0.58
COL7A1-208ENST00000470076 FOXD4L5Q5VV16 416 aaPredicted RBP18.67■□□□□ 0.58
COL7A1-208ENST00000470076 ATL3Q6DD88 541 aa18.67■□□□□ 0.58
COL7A1-208ENST00000470076 PKN3Q6P5Z2 889 aa18.67■□□□□ 0.58
COL7A1-208ENST00000470076 C12orf56Q8IXR9 622 aa18.67■□□□□ 0.58
COL7A1-208ENST00000470076 ARL14EPQ8N8R7 260 aaPredicted RBP18.67■□□□□ 0.58
COL7A1-208ENST00000470076 FOXD4L4Q8WXT5 416 aaPredicted RBP18.67■□□□□ 0.58
COL7A1-208ENST00000470076 MRPL45Q9BRJ2 306 aaKnown RBP18.67■□□□□ 0.58
COL7A1-208ENST00000470076 RTKNQ9BST9 563 aa18.67■□□□□ 0.58
COL7A1-208ENST00000470076 BLZF1Q9H2G9 400 aa18.67■□□□□ 0.58
COL7A1-208ENST00000470076 SEMA4GQ9NTN9 838 aa18.67■□□□□ 0.58
COL7A1-208ENST00000470076 ARHGAP26Q9UNA1 814 aa18.67■□□□□ 0.58
COL7A1-208ENST00000470076 SLC8A2Q9UPR5 921 aa18.67■□□□□ 0.58
COL7A1-208ENST00000470076 SDK1Q7Z5N4 2213 aa18.66■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms