RNA–Protein interactions for RNA: ENST00000468211.6

PTCH1-210, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 1,254 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-210ENST00000468211 NAIF1Q69YI7 327 aaPredicted RBP26.2■■□□□ 1.78
PTCH1-210ENST00000468211 FSTL4Q6MZW2 842 aa26.2■■□□□ 1.78
PTCH1-210ENST00000468211 GRAMD1CQ8IYS0 662 aa26.2■■□□□ 1.78
PTCH1-210ENST00000468211 ZNF516Q92618 1163 aa26.2■■□□□ 1.78
PTCH1-210ENST00000468211 CCDC127Q96BQ5 260 aa26.2■■□□□ 1.78
PTCH1-210ENST00000468211 FBRSL1Q9HCM7 1045 aaKnown RBP26.2■■□□□ 1.78
PTCH1-210ENST00000468211 TRPC7Q9HCX4 862 aa26.2■■□□□ 1.78
PTCH1-210ENST00000468211 CDH9Q9ULB4 789 aa26.2■■□□□ 1.78
PTCH1-210ENST00000468211 EML5Q05BV3 1969 aa26.19■■□□□ 1.78
PTCH1-210ENST00000468211 BDNFP23560 247 aa26.19■■□□□ 1.78
PTCH1-210ENST00000468211 AFMP43652 599 aa26.19■■□□□ 1.78
PTCH1-210ENST00000468211 PUM1Q14671 1186 aaKnown RBP eCLIP26.19■■□□□ 1.78
PTCH1-210ENST00000468211 PSMD6Q15008 389 aa26.19■■□□□ 1.78
PTCH1-210ENST00000468211 TMEM196Q5HYL7 178 aa26.19■■□□□ 1.78
PTCH1-210ENST00000468211 RESP18Q5W5W9 173 aa26.19■■□□□ 1.78
PTCH1-210ENST00000468211 XXYLT1Q8NBI6 393 aa26.19■■□□□ 1.78
PTCH1-210ENST00000468211 MMS19Q96T76 1030 aa26.19■■□□□ 1.78
PTCH1-210ENST00000468211 CGRRF1Q99675 332 aa26.19■■□□□ 1.78
PTCH1-210ENST00000468211 SLC39A2Q9NP94 309 aa26.19■■□□□ 1.78
PTCH1-210ENST00000468211 GCNT4Q9P109 453 aa26.19■■□□□ 1.78
PTCH1-210ENST00000468211 MAGEC2Q9UBF1 373 aaPredicted RBP26.19■■□□□ 1.78
PTCH1-210ENST00000468211 UBE4BO95155 1302 aa26.18■■□□□ 1.78
PTCH1-210ENST00000468211 MED19A0JLT2 244 aaPredicted RBP26.18■■□□□ 1.78
PTCH1-210ENST00000468211 C2orf78A6NCI8 922 aa26.18■■□□□ 1.78
PTCH1-210ENST00000468211 TNNI1P19237 187 aa26.18■■□□□ 1.78
PTCH1-210ENST00000468211 ME1P48163 572 aa26.18■■□□□ 1.78
PTCH1-210ENST00000468211 USP46P62068 366 aa26.18■■□□□ 1.78
PTCH1-210ENST00000468211 C4orf50Q6ZRC1 276 aa26.18■■□□□ 1.78
PTCH1-210ENST00000468211 PRR23BQ6ZRT6 265 aa26.18■■□□□ 1.78
PTCH1-210ENST00000468211 DGLUCYQ7Z3D6 616 aa26.18■■□□□ 1.78
PTCH1-210ENST00000468211 SYNPOQ8N3V7 929 aa26.18■■□□□ 1.78
PTCH1-210ENST00000468211 ARL14EPQ8N8R7 260 aaPredicted RBP26.18■■□□□ 1.78
PTCH1-210ENST00000468211 SECISBP2LQ93073 1101 aaKnown RBP26.18■■□□□ 1.78
PTCH1-210ENST00000468211 MAGEF1Q9HAY2 307 aa26.18■■□□□ 1.78
PTCH1-210ENST00000468211 KIAA1549LQ6ZVL6 1849 aa26.18■■□□□ 1.78
PTCH1-210ENST00000468211 TRDMT1O14717 391 aaKnown RBP26.17■■□□□ 1.78
PTCH1-210ENST00000468211 FAM160A1Q05DH4 1040 aa26.17■■□□□ 1.78
PTCH1-210ENST00000468211 MTF1Q14872 753 aa26.17■■□□□ 1.78
PTCH1-210ENST00000468211 ZNF77Q15935 545 aa26.17■■□□□ 1.78
PTCH1-210ENST00000468211 BMT2Q1RMZ1 405 aa26.17■■□□□ 1.78
PTCH1-210ENST00000468211 HSCBQ8IWL3 235 aa26.17■■□□□ 1.78
PTCH1-210ENST00000468211 SPRYD3Q8NCJ5 442 aa26.17■■□□□ 1.78
PTCH1-210ENST00000468211 TTC16Q8NEE8 873 aa26.17■■□□□ 1.78
PTCH1-210ENST00000468211 PLEKHO2Q8TD55 490 aa26.17■■□□□ 1.78
PTCH1-210ENST00000468211 PCED1BQ96HM7 432 aa26.17■■□□□ 1.78
PTCH1-210ENST00000468211 GMEB2Q9UKD1 530 aa26.17■■□□□ 1.78
PTCH1-210ENST00000468211 TRAV19A0A0A6YYK7 116 aa26.16■■□□□ 1.78
PTCH1-210ENST00000468211 EGFP01133 1207 aa26.16■■□□□ 1.78
PTCH1-210ENST00000468211 CKMP06732 381 aa26.16■■□□□ 1.78
PTCH1-210ENST00000468211 USP17L7P0C7H9 530 aa26.16■■□□□ 1.78
PTCH1-210ENST00000468211 CYP27A1Q02318 531 aa26.16■■□□□ 1.78
PTCH1-210ENST00000468211 DNM1Q05193 864 aaKnown RBP26.16■■□□□ 1.78
PTCH1-210ENST00000468211 SPEM2Q0P670 501 aa26.16■■□□□ 1.78
PTCH1-210ENST00000468211 USP4Q13107 963 aa26.16■■□□□ 1.78
PTCH1-210ENST00000468211 SIM2Q14190 667 aaPredicted RBP26.16■■□□□ 1.78
PTCH1-210ENST00000468211 LAIR1Q6GTX8 287 aa26.16■■□□□ 1.78
PTCH1-210ENST00000468211 CC2D1AQ6P1N0 951 aaPredicted RBP26.16■■□□□ 1.78
PTCH1-210ENST00000468211 LONP2Q86WA8 852 aa26.16■■□□□ 1.78
PTCH1-210ENST00000468211 GPR161Q8N6U8 529 aaKnown RBP26.16■■□□□ 1.78
PTCH1-210ENST00000468211 MYCBPAPQ8TBZ2 947 aa26.16■■□□□ 1.78
PTCH1-210ENST00000468211 SPATA17Q96L03 361 aa26.16■■□□□ 1.78
PTCH1-210ENST00000468211 FNBP1Q96RU3 617 aa26.16■■□□□ 1.78
PTCH1-210ENST00000468211 POLR3BQ9NW08 1133 aaPredicted RBP26.16■■□□□ 1.78
PTCH1-210ENST00000468211 SERTAD1Q9UHV2 236 aa26.16■■□□□ 1.78
PTCH1-210ENST00000468211 RAB23Q9ULC3 237 aa26.16■■□□□ 1.78
PTCH1-210ENST00000468211 USP18Q9UMW8 372 aa26.16■■□□□ 1.78
PTCH1-210ENST00000468211 WNT6Q9Y6F9 365 aa26.16■■□□□ 1.78
PTCH1-210ENST00000468211 SDK1Q7Z5N4 2213 aa26.16■■□□□ 1.78
PTCH1-210ENST00000468211 SPAG17Q6Q759 2223 aa26.15■■□□□ 1.78
PTCH1-210ENST00000468211 GJA4P35212 333 aa26.15■■□□□ 1.78
PTCH1-210ENST00000468211 GNL1P36915 607 aaPredicted RBP26.15■■□□□ 1.78
PTCH1-210ENST00000468211 GRIK1P39086 918 aa26.15■■□□□ 1.78
PTCH1-210ENST00000468211 CASP4P49662 377 aa26.15■■□□□ 1.78
PTCH1-210ENST00000468211 MYL6P60660 151 aa26.15■■□□□ 1.78
PTCH1-210ENST00000468211 SNRPFP62306 86 aaKnown RBP26.15■■□□□ 1.78
PTCH1-210ENST00000468211 PDGFRLQ15198 375 aa26.15■■□□□ 1.78
PTCH1-210ENST00000468211 WDR72Q3MJ13 1102 aa26.15■■□□□ 1.78
PTCH1-210ENST00000468211 MDH1BQ5I0G3 518 aa26.15■■□□□ 1.78
PTCH1-210ENST00000468211 VSTM1Q6UX27 236 aa26.15■■□□□ 1.78
PTCH1-210ENST00000468211 HS2ST1Q7LGA3 356 aa26.15■■□□□ 1.78
PTCH1-210ENST00000468211 DPEP3Q9H4B8 488 aa26.15■■□□□ 1.78
PTCH1-210ENST00000468211 TMEM30AQ9NV96 361 aa26.15■■□□□ 1.78
PTCH1-210ENST00000468211 FAM13BQ9NYF5 915 aa26.15■■□□□ 1.78
PTCH1-210ENST00000468211 PVALEFA0A1B0GWK0 134 aa26.14■■□□□ 1.78
PTCH1-210ENST00000468211 KLRC4O43908 158 aa26.14■■□□□ 1.78
PTCH1-210ENST00000468211 TACC1O75410 805 aa26.14■■□□□ 1.78
PTCH1-210ENST00000468211 HSP90AA1P07900 732 aaKnown RBP26.14■■□□□ 1.78
PTCH1-210ENST00000468211 PXNP49023 591 aaPredicted RBP26.14■■□□□ 1.78
PTCH1-210ENST00000468211 GALK1P51570 392 aa26.14■■□□□ 1.78
PTCH1-210ENST00000468211 CACNA2D1P54289 1103 aa26.14■■□□□ 1.78
PTCH1-210ENST00000468211 ZXDBP98169 803 aa26.14■■□□□ 1.78
PTCH1-210ENST00000468211 GRSF1Q12849 480 aaKnown RBP eCLIP26.14■■□□□ 1.78
PTCH1-210ENST00000468211 KNOP1Q1ED39 458 aaKnown RBP26.14■■□□□ 1.78
PTCH1-210ENST00000468211 C12orf56Q8IXR9 622 aa26.14■■□□□ 1.78
PTCH1-210ENST00000468211 SH3RF2Q8TEC5 729 aa26.14■■□□□ 1.78
PTCH1-210ENST00000468211 OSCP1Q8WVF1 389 aa26.14■■□□□ 1.78
PTCH1-210ENST00000468211 XYLT2Q9H1B5 865 aa26.14■■□□□ 1.78
PTCH1-210ENST00000468211 SNX25Q9H3E2 840 aa26.14■■□□□ 1.78
PTCH1-210ENST00000468211 ECT2Q9H8V3 914 aa26.14■■□□□ 1.78
PTCH1-210ENST00000468211 DUS2Q9NX74 493 aaKnown RBP26.14■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms