RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 APPL2Q8NEU8 664 aa19.74■□□□□ 0.75
CCDC88B-204ENST00000463837 SEPT1Q8WYJ6 367 aa19.74■□□□□ 0.75
CCDC88B-204ENST00000463837 CAAP1Q9H8G2 361 aa19.74■□□□□ 0.75
CCDC88B-204ENST00000463837 MAP2P11137 1827 aaKnown RBP19.74■□□□□ 0.75
CCDC88B-204ENST00000463837 BTNL10A8MVZ5 291 aa19.74■□□□□ 0.75
CCDC88B-204ENST00000463837 PSMC3P17980 439 aa19.74■□□□□ 0.75
CCDC88B-204ENST00000463837 SZRD1Q7Z422 152 aa19.74■□□□□ 0.75
CCDC88B-204ENST00000463837 TEX13BQ9BXU2 312 aa19.74■□□□□ 0.75
CCDC88B-204ENST00000463837 DCLK3Q9C098 648 aa19.74■□□□□ 0.75
CCDC88B-204ENST00000463837 GPBP1L1Q9HC44 474 aaPredicted RBP19.74■□□□□ 0.75
CCDC88B-204ENST00000463837 MAP3K20Q9NYL2 800 aaKnown RBP19.74■□□□□ 0.75
CCDC88B-204ENST00000463837 ZSCAN5CA6NGD5 496 aaPredicted RBP19.74■□□□□ 0.75
CCDC88B-204ENST00000463837 SAMD3Q8N6K7 520 aa19.74■□□□□ 0.75
CCDC88B-204ENST00000463837 DDHD1Q8NEL9 900 aa19.74■□□□□ 0.75
CCDC88B-204ENST00000463837 TFB1MQ8WVM0 346 aaKnown RBP19.74■□□□□ 0.75
CCDC88B-204ENST00000463837 TATDN2Q93075 761 aa19.74■□□□□ 0.75
CCDC88B-204ENST00000463837 GPRASP2Q96D09 838 aa19.74■□□□□ 0.75
CCDC88B-204ENST00000463837 CCDC126Q96EE4 140 aa19.74■□□□□ 0.75
CCDC88B-204ENST00000463837 TRIM45Q9H8W5 580 aaPredicted RBP19.74■□□□□ 0.75
CCDC88B-204ENST00000463837 DIP2BQ9P265 1576 aa19.73■□□□□ 0.75
CCDC88B-204ENST00000463837 HMOX2P30519 316 aa19.73■□□□□ 0.75
CCDC88B-204ENST00000463837 NNMTP40261 264 aa19.73■□□□□ 0.75
CCDC88B-204ENST00000463837 DEFA1P59665 94 aa19.73■□□□□ 0.75
CCDC88B-204ENST00000463837 DEFA3P59666 94 aa19.73■□□□□ 0.75
CCDC88B-204ENST00000463837 CCDC85BQ15834 202 aaPredicted RBP19.73■□□□□ 0.75
CCDC88B-204ENST00000463837 IER5Q5VY09 327 aa19.73■□□□□ 0.75
CCDC88B-204ENST00000463837 IZUMO2Q6UXV1 221 aa19.73■□□□□ 0.75
CCDC88B-204ENST00000463837 STAU2Q9NUL3 570 aaKnown RBP eCLIP19.73■□□□□ 0.75
CCDC88B-204ENST00000463837 A0A087X0B3 334 aa19.73■□□□□ 0.75
CCDC88B-204ENST00000463837 TLR2O60603 784 aa19.73■□□□□ 0.75
CCDC88B-204ENST00000463837 RPL21P46778 160 aaKnown RBP19.73■□□□□ 0.75
CCDC88B-204ENST00000463837 CACNA2D1P54289 1103 aa19.73■□□□□ 0.75
CCDC88B-204ENST00000463837 PTK6Q13882 451 aa19.73■□□□□ 0.75
CCDC88B-204ENST00000463837 BAATQ14032 418 aaPredicted RBP19.73■□□□□ 0.75
CCDC88B-204ENST00000463837 ACSF2Q96CM8 615 aaPredicted RBP19.73■□□□□ 0.75
CCDC88B-204ENST00000463837 RIC8BQ9NVN3 520 aa19.73■□□□□ 0.75
CCDC88B-204ENST00000463837 SNX9Q9Y5X1 595 aa19.73■□□□□ 0.75
CCDC88B-204ENST00000463837 PTGER2P43116 358 aa19.73■□□□□ 0.75
CCDC88B-204ENST00000463837 CDR2LQ86X02 465 aaPredicted RBP19.73■□□□□ 0.75
CCDC88B-204ENST00000463837 STK32AQ8WU08 396 aa19.73■□□□□ 0.75
CCDC88B-204ENST00000463837 ZKSCAN4Q969J2 545 aaPredicted RBP19.73■□□□□ 0.75
CCDC88B-204ENST00000463837 CNDP1Q96KN2 507 aa19.73■□□□□ 0.75
CCDC88B-204ENST00000463837 FAM192AQ9GZU8 254 aa19.73■□□□□ 0.75
CCDC88B-204ENST00000463837 PCDHA3Q9Y5H8 950 aa19.73■□□□□ 0.75
CCDC88B-204ENST00000463837 KCNK10P57789 538 aa19.73■□□□□ 0.75
CCDC88B-204ENST00000463837 ITGB3BPQ13352 177 aaPredicted RBP19.73■□□□□ 0.75
CCDC88B-204ENST00000463837 SIK3Q9Y2K2 1263 aa19.73■□□□□ 0.75
CCDC88B-204ENST00000463837 KANSL1LA0AUZ9 987 aa19.72■□□□□ 0.75
CCDC88B-204ENST00000463837 M0R3G1 203 aa19.72■□□□□ 0.75
CCDC88B-204ENST00000463837 MAGEB2O15479 319 aa19.72■□□□□ 0.75
CCDC88B-204ENST00000463837 TIMM44O43615 452 aa19.72■□□□□ 0.75
CCDC88B-204ENST00000463837 GAS2O43903 313 aaKnown RBP19.72■□□□□ 0.75
CCDC88B-204ENST00000463837 GRAP2O75791 330 aa19.72■□□□□ 0.75
CCDC88B-204ENST00000463837 AQP5P55064 265 aa19.72■□□□□ 0.75
CCDC88B-204ENST00000463837 PLOD1Q02809 727 aaPredicted RBP19.72■□□□□ 0.75
CCDC88B-204ENST00000463837 COG2Q14746 738 aa19.72■□□□□ 0.75
CCDC88B-204ENST00000463837 ZNF669Q96BR6 464 aaPredicted RBP19.72■□□□□ 0.75
CCDC88B-204ENST00000463837 PRPF18Q99633 342 aaKnown RBP19.72■□□□□ 0.75
CCDC88B-204ENST00000463837 SMARCAD1Q9H4L7 1026 aa19.72■□□□□ 0.75
CCDC88B-204ENST00000463837 SCN3BQ9NY72 215 aa19.72■□□□□ 0.75
CCDC88B-204ENST00000463837 KIAA1257Q9ULG3 409 aa19.72■□□□□ 0.75
CCDC88B-204ENST00000463837 SATB2Q9UPW6 733 aa19.72■□□□□ 0.75
CCDC88B-204ENST00000463837 ADAMTS13Q76LX8 1427 aa19.72■□□□□ 0.75
CCDC88B-204ENST00000463837 C19orf81C9J6K1 198 aa19.72■□□□□ 0.75
CCDC88B-204ENST00000463837 CD4P01730 458 aa19.72■□□□□ 0.75
CCDC88B-204ENST00000463837 PSMA4P25789 261 aaKnown RBP19.72■□□□□ 0.75
CCDC88B-204ENST00000463837 RFWD2Q8NHY2 731 aa19.72■□□□□ 0.75
CCDC88B-204ENST00000463837 KRT33BQ14525 404 aa19.72■□□□□ 0.75
CCDC88B-204ENST00000463837 ATF7IP2Q5U623 682 aa19.72■□□□□ 0.75
CCDC88B-204ENST00000463837 LAYNQ6UX15 382 aa19.72■□□□□ 0.75
CCDC88B-204ENST00000463837 PRMT7Q9NVM4 692 aaPredicted RBP19.72■□□□□ 0.75
CCDC88B-204ENST00000463837 CAMSAP3Q9P1Y5 1249 aaPredicted RBP19.72■□□□□ 0.75
CCDC88B-204ENST00000463837 POLRMTO00411 1230 aaKnown RBP19.72■□□□□ 0.75
CCDC88B-204ENST00000463837 CLPTM1O96005 669 aa19.72■□□□□ 0.75
CCDC88B-204ENST00000463837 HLA-DPA1P20036 260 aa19.72■□□□□ 0.75
CCDC88B-204ENST00000463837 OTUD4Q01804 1114 aaKnown RBP19.72■□□□□ 0.75
CCDC88B-204ENST00000463837 CERKQ8TCT0 537 aa19.72■□□□□ 0.75
CCDC88B-204ENST00000463837 ALBP02768 609 aa19.71■□□□□ 0.75
CCDC88B-204ENST00000463837 RPS6P62753 249 aaKnown RBP19.71■□□□□ 0.75
CCDC88B-204ENST00000463837 SDR42E2A6NKP2 422 aa19.71■□□□□ 0.75
CCDC88B-204ENST00000463837 MTIF3Q9H2K0 278 aaKnown RBP19.71■□□□□ 0.75
CCDC88B-204ENST00000463837 DNALI1O14645 258 aaPredicted RBP19.71■□□□□ 0.75
CCDC88B-204ENST00000463837 ZBTB39O15060 712 aa19.71■□□□□ 0.75
CCDC88B-204ENST00000463837 PDE5AO76074 875 aa19.71■□□□□ 0.75
CCDC88B-204ENST00000463837 CASP7P55210 303 aa19.71■□□□□ 0.75
CCDC88B-204ENST00000463837 C1QBPQ07021 282 aaKnown RBP19.71■□□□□ 0.75
CCDC88B-204ENST00000463837 FAM83EQ2M2I3 478 aa19.71■□□□□ 0.75
CCDC88B-204ENST00000463837 C6orf10Q5SRN2 563 aa19.71■□□□□ 0.75
CCDC88B-204ENST00000463837 RIN3Q8TB24 985 aa19.71■□□□□ 0.75
CCDC88B-204ENST00000463837 PCDHGB4Q9UN71 923 aa19.71■□□□□ 0.75
CCDC88B-204ENST00000463837 ZC3H12BQ5HYM0 836 aaKnown RBP19.71■□□□□ 0.75
CCDC88B-204ENST00000463837 SWT1Q5T5J6 900 aaKnown RBP19.71■□□□□ 0.75
CCDC88B-204ENST00000463837 CYP4A22Q5TCH4 519 aa19.71■□□□□ 0.75
CCDC88B-204ENST00000463837 SNX30Q5VWJ9 437 aa19.71■□□□□ 0.75
CCDC88B-204ENST00000463837 INTS13Q9NVM9 706 aa19.71■□□□□ 0.75
CCDC88B-204ENST00000463837 TSC22D4Q9Y3Q8 395 aa19.71■□□□□ 0.75
CCDC88B-204ENST00000463837 RRM1P23921 792 aa19.7■□□□□ 0.74
CCDC88B-204ENST00000463837 PRKCIP41743 596 aa19.7■□□□□ 0.74
CCDC88B-204ENST00000463837 VCPP55072 806 aaKnown RBP19.7■□□□□ 0.74
CCDC88B-204ENST00000463837 TAS2R42Q7RTR8 314 aa19.7■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms