RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 CDH7Q9ULB5 785 aa24.27■■□□□ 1.48
CCDC28B-203ENST00000461819 MAGED2Q9UNF1 606 aaPredicted RBP24.27■■□□□ 1.48
CCDC28B-203ENST00000461819 DENND4CQ5VZ89 1909 aa24.27■■□□□ 1.48
CCDC28B-203ENST00000461819 ZNF638Q14966 1978 aaKnown RBP24.27■■□□□ 1.48
CCDC28B-203ENST00000461819 PATJQ8NI35 1801 aa24.26■■□□□ 1.47
CCDC28B-203ENST00000461819 F8VP50 259 aa24.26■■□□□ 1.47
CCDC28B-203ENST00000461819 FGF19O95750 216 aa24.26■■□□□ 1.47
CCDC28B-203ENST00000461819 CEBPBP17676 345 aa24.26■■□□□ 1.47
CCDC28B-203ENST00000461819 SLC9A1P19634 815 aa24.26■■□□□ 1.47
CCDC28B-203ENST00000461819 ADORA2BP29275 332 aa24.26■■□□□ 1.47
CCDC28B-203ENST00000461819 RAD23BP54727 409 aa24.26■■□□□ 1.47
CCDC28B-203ENST00000461819 PRSS36Q5K4E3 855 aa24.26■■□□□ 1.47
CCDC28B-203ENST00000461819 ZDHHC14Q8IZN3 488 aa24.26■■□□□ 1.47
CCDC28B-203ENST00000461819 FGF13Q92913 245 aa24.26■■□□□ 1.47
CCDC28B-203ENST00000461819 KAT5Q92993 513 aa24.26■■□□□ 1.47
CCDC28B-203ENST00000461819 TCEAL4Q96EI5 215 aa24.26■■□□□ 1.47
CCDC28B-203ENST00000461819 GCNAQ96QF7 691 aa24.26■■□□□ 1.47
CCDC28B-203ENST00000461819 PCDHB4Q9Y5E5 795 aa24.26■■□□□ 1.47
CCDC28B-203ENST00000461819 ZFP37Q9Y6Q3 630 aaPredicted RBP24.26■■□□□ 1.47
CCDC28B-203ENST00000461819 SLC38A8A6NNN8 435 aa24.25■■□□□ 1.47
CCDC28B-203ENST00000461819 BECN2A8MW95 431 aa24.25■■□□□ 1.47
CCDC28B-203ENST00000461819 AP1G2O75843 785 aa24.25■■□□□ 1.47
CCDC28B-203ENST00000461819 CCR2P41597 374 aa24.25■■□□□ 1.47
CCDC28B-203ENST00000461819 CACNA2D1P54289 1103 aa24.25■■□□□ 1.47
CCDC28B-203ENST00000461819 PHLDB3Q6NSJ2 640 aa24.25■■□□□ 1.47
CCDC28B-203ENST00000461819 TMEM270Q6UE05 265 aa24.25■■□□□ 1.47
CCDC28B-203ENST00000461819 DHX40Q8IX18 779 aaKnown RBP24.25■■□□□ 1.47
CCDC28B-203ENST00000461819 NPAS3Q8IXF0 933 aa24.25■■□□□ 1.47
CCDC28B-203ENST00000461819 SLC4A11Q8NBS3 891 aa24.25■■□□□ 1.47
CCDC28B-203ENST00000461819 CYFIP2Q96F07 1278 aa24.25■■□□□ 1.47
CCDC28B-203ENST00000461819 SPATA17Q96L03 361 aa24.25■■□□□ 1.47
CCDC28B-203ENST00000461819 C8orf48Q96LL4 319 aa24.25■■□□□ 1.47
CCDC28B-203ENST00000461819 LRRC3Q9BY71 257 aa24.25■■□□□ 1.47
CCDC28B-203ENST00000461819 UBE2TQ9NPD8 197 aaPredicted RBP24.25■■□□□ 1.47
CCDC28B-203ENST00000461819 DMAP1Q9NPF5 467 aaPredicted RBP24.25■■□□□ 1.47
CCDC28B-203ENST00000461819 APEX2Q9UBZ4 518 aa24.25■■□□□ 1.47
CCDC28B-203ENST00000461819 NCOR1O75376 2440 aa24.24■■□□□ 1.47
CCDC28B-203ENST00000461819 A0A1W2PRU2 124 aa24.24■■□□□ 1.47
CCDC28B-203ENST00000461819 GJA1P17302 382 aa24.24■■□□□ 1.47
CCDC28B-203ENST00000461819 PON1P27169 355 aa24.24■■□□□ 1.47
CCDC28B-203ENST00000461819 GABRR2P28476 465 aa24.24■■□□□ 1.47
CCDC28B-203ENST00000461819 MFAP3P55082 362 aa24.24■■□□□ 1.47
CCDC28B-203ENST00000461819 MTMR3Q13615 1198 aa24.24■■□□□ 1.47
CCDC28B-203ENST00000461819 PAQR9Q6ZVX9 377 aa24.24■■□□□ 1.47
CCDC28B-203ENST00000461819 RNF135Q8IUD6 432 aa24.24■■□□□ 1.47
CCDC28B-203ENST00000461819 UBR7Q8N806 425 aa24.24■■□□□ 1.47
CCDC28B-203ENST00000461819 SHKBP1Q8TBC3 707 aa24.24■■□□□ 1.47
CCDC28B-203ENST00000461819 FAM81BQ96LP2 452 aa24.24■■□□□ 1.47
CCDC28B-203ENST00000461819 CEP295NLQ96MC4 621 aa24.24■■□□□ 1.47
CCDC28B-203ENST00000461819 HNRNPABQ99729 332 aaKnown RBP24.24■■□□□ 1.47
CCDC28B-203ENST00000461819 EPS15L1Q9UBC2 864 aa24.24■■□□□ 1.47
CCDC28B-203ENST00000461819 UXTQ9UBK9 157 aaPredicted RBP24.24■■□□□ 1.47
CCDC28B-203ENST00000461819 LIMD1Q9UGP4 676 aa24.24■■□□□ 1.47
CCDC28B-203ENST00000461819 LIMA1Q9UHB6 759 aaKnown RBP24.24■■□□□ 1.47
CCDC28B-203ENST00000461819 MYO16Q9Y6X6 1858 aa24.24■■□□□ 1.47
CCDC28B-203ENST00000461819 NOL4O94818 638 aa24.23■■□□□ 1.47
CCDC28B-203ENST00000461819 MICAL2O94851 1124 aa24.23■■□□□ 1.47
CCDC28B-203ENST00000461819 FAM200BP0CF97 657 aa24.23■■□□□ 1.47
CCDC28B-203ENST00000461819 LAMP2P13473 410 aa24.23■■□□□ 1.47
CCDC28B-203ENST00000461819 CD19P15391 556 aa24.23■■□□□ 1.47
CCDC28B-203ENST00000461819 ZNF18P17022 549 aa24.23■■□□□ 1.47
CCDC28B-203ENST00000461819 HMGA1P17096 107 aaKnown RBP24.23■■□□□ 1.47
CCDC28B-203ENST00000461819 CDC25CP30307 473 aa24.23■■□□□ 1.47
CCDC28B-203ENST00000461819 COPB1P53618 953 aaKnown RBP24.23■■□□□ 1.47
CCDC28B-203ENST00000461819 FKBP15Q5T1M5 1219 aa24.23■■□□□ 1.47
CCDC28B-203ENST00000461819 DENND5BQ6ZUT9 1274 aa24.23■■□□□ 1.47
CCDC28B-203ENST00000461819 ENOSF1Q7L5Y1 443 aa24.23■■□□□ 1.47
CCDC28B-203ENST00000461819 MCRS1Q96EZ8 462 aa24.23■■□□□ 1.47
CCDC28B-203ENST00000461819 KREMEN1Q96MU8 473 aa24.23■■□□□ 1.47
CCDC28B-203ENST00000461819 ATXN3LQ9H3M9 355 aa24.23■■□□□ 1.47
CCDC28B-203ENST00000461819 SLITRK6Q9H5Y7 841 aa24.23■■□□□ 1.47
CCDC28B-203ENST00000461819 TMEM30AQ9NV96 361 aa24.23■■□□□ 1.47
CCDC28B-203ENST00000461819 MYO10Q9HD67 2058 aa24.23■■□□□ 1.47
CCDC28B-203ENST00000461819 TNFRSF10AO00220 468 aa24.22■■□□□ 1.47
CCDC28B-203ENST00000461819 KRT5P13647 590 aa24.22■■□□□ 1.47
CCDC28B-203ENST00000461819 ACO1P21399 889 aaKnown RBP24.22■■□□□ 1.47
CCDC28B-203ENST00000461819 APBA1Q02410 837 aa24.22■■□□□ 1.47
CCDC28B-203ENST00000461819 TEAD2Q15562 447 aa24.22■■□□□ 1.47
CCDC28B-203ENST00000461819 ARHGAP15Q53QZ3 475 aa24.22■■□□□ 1.47
CCDC28B-203ENST00000461819 PPP1R26Q5T8A7 1209 aaPredicted RBP24.22■■□□□ 1.47
CCDC28B-203ENST00000461819 GJB7Q6PEY0 223 aa24.22■■□□□ 1.47
CCDC28B-203ENST00000461819 GAREM2Q75VX8 874 aa24.22■■□□□ 1.47
CCDC28B-203ENST00000461819 RBBP8NLQ8NC74 664 aaPredicted RBP24.22■■□□□ 1.47
CCDC28B-203ENST00000461819 TRMT2BQ96GJ1 504 aaKnown RBP24.22■■□□□ 1.47
CCDC28B-203ENST00000461819 KCNK16Q96T55 309 aa24.22■■□□□ 1.47
CCDC28B-203ENST00000461819 HSD3B7Q9H2F3 369 aa24.22■■□□□ 1.47
CCDC28B-203ENST00000461819 GDE1Q9NZC3 331 aa24.22■■□□□ 1.47
CCDC28B-203ENST00000461819 EHD2Q9NZN4 543 aa24.22■■□□□ 1.47
CCDC28B-203ENST00000461819 TTC28Q96AY4 2481 aa24.22■■□□□ 1.47
CCDC28B-203ENST00000461819 NUP210Q8TEM1 1887 aaPredicted RBP24.21■■□□□ 1.47
CCDC28B-203ENST00000461819 NRG2O14511 850 aaPredicted RBP24.21■■□□□ 1.47
CCDC28B-203ENST00000461819 MOSPD3O75425 235 aa24.21■■□□□ 1.47
CCDC28B-203ENST00000461819 CAVIN2O95810 425 aa24.21■■□□□ 1.47
CCDC28B-203ENST00000461819 MAP3K7CLP57077 242 aa24.21■■□□□ 1.47
CCDC28B-203ENST00000461819 ARHGAP44Q17R89 818 aa24.21■■□□□ 1.47
CCDC28B-203ENST00000461819 SGO2Q562F6 1265 aa24.21■■□□□ 1.47
CCDC28B-203ENST00000461819 JAKMIP2Q96AA8 810 aa24.21■■□□□ 1.47
CCDC28B-203ENST00000461819 IL21Q9HBE4 155 aa24.21■■□□□ 1.47
CCDC28B-203ENST00000461819 CBX8Q9HC52 389 aa24.21■■□□□ 1.47
CCDC28B-203ENST00000461819 ANAPC1Q9H1A4 1944 aa24.2■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms