RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 TXNDC8Q6A555 127 aa14.9□□□□□ -0.02
USP4-206ENST00000461553 MON1AQ86VX9 555 aa14.9□□□□□ -0.02
USP4-206ENST00000461553 ZNF687Q8N1G0 1237 aa14.9□□□□□ -0.02
USP4-206ENST00000461553 FSIP1Q8NA03 581 aa14.9□□□□□ -0.02
USP4-206ENST00000461553 TTC8Q8TAM2 541 aa14.9□□□□□ -0.02
USP4-206ENST00000461553 CHAMP1Q96JM3 812 aa14.9□□□□□ -0.02
USP4-206ENST00000461553 MYRFLQ96LU7 910 aa14.9□□□□□ -0.02
USP4-206ENST00000461553 LRRC3BQ96PB8 259 aa14.9□□□□□ -0.02
USP4-206ENST00000461553 MRPL45Q9BRJ2 306 aaKnown RBP14.9□□□□□ -0.02
USP4-206ENST00000461553 LMAN1LQ9HAT1 526 aa14.9□□□□□ -0.02
USP4-206ENST00000461553 TDP1Q9NUW8 608 aa14.9□□□□□ -0.02
USP4-206ENST00000461553 NXF1Q9UBU9 619 aaKnown RBP14.9□□□□□ -0.02
USP4-206ENST00000461553 GPR179Q6PRD1 2367 aa14.9□□□□□ -0.02
USP4-206ENST00000461553 TRAV19A0A0A6YYK7 116 aa14.89□□□□□ -0.03
USP4-206ENST00000461553 LRRIQ3A6PVS8 624 aaPredicted RBP14.89□□□□□ -0.03
USP4-206ENST00000461553 PDXKO00764 312 aa14.89□□□□□ -0.03
USP4-206ENST00000461553 CALUO43852 315 aaPredicted RBP14.89□□□□□ -0.03
USP4-206ENST00000461553 CST3P01034 146 aaPredicted RBP14.89□□□□□ -0.03
USP4-206ENST00000461553 NR3C1P04150 777 aa14.89□□□□□ -0.03
USP4-206ENST00000461553 RPN1P04843 607 aaKnown RBP14.89□□□□□ -0.03
USP4-206ENST00000461553 CKMP06732 381 aa14.89□□□□□ -0.03
USP4-206ENST00000461553 BDNFP23560 247 aa14.89□□□□□ -0.03
USP4-206ENST00000461553 GNL1P36915 607 aaPredicted RBP14.89□□□□□ -0.03
USP4-206ENST00000461553 GRIK1P39086 918 aa14.89□□□□□ -0.03
USP4-206ENST00000461553 NDUFA8P51970 172 aa14.89□□□□□ -0.03
USP4-206ENST00000461553 MYL6P60660 151 aa14.89□□□□□ -0.03
USP4-206ENST00000461553 TNK2Q07912 1038 aa14.89□□□□□ -0.03
USP4-206ENST00000461553 FZD5Q13467 585 aa14.89□□□□□ -0.03
USP4-206ENST00000461553 ZNF268Q14587 947 aaPredicted RBP14.89□□□□□ -0.03
USP4-206ENST00000461553 KCNB1Q14721 858 aa14.89□□□□□ -0.03
USP4-206ENST00000461553 ITPRIPL2Q3MIP1 535 aa14.89□□□□□ -0.03
USP4-206ENST00000461553 TDRD10Q5VZ19 366 aaKnown RBP14.89□□□□□ -0.03
USP4-206ENST00000461553 CC2D1AQ6P1N0 951 aaPredicted RBP14.89□□□□□ -0.03
USP4-206ENST00000461553 SLC9A9Q8IVB4 645 aa14.89□□□□□ -0.03
USP4-206ENST00000461553 MYCBPAPQ8TBZ2 947 aa14.89□□□□□ -0.03
USP4-206ENST00000461553 ATRIPQ8WXE1 791 aa14.89□□□□□ -0.03
USP4-206ENST00000461553 USP13Q92995 863 aaPredicted RBP14.89□□□□□ -0.03
USP4-206ENST00000461553 CCDC34Q96HJ3 373 aa14.89□□□□□ -0.03
USP4-206ENST00000461553 PCED1BQ96HM7 432 aa14.89□□□□□ -0.03
USP4-206ENST00000461553 SPATA17Q96L03 361 aa14.89□□□□□ -0.03
USP4-206ENST00000461553 CEP295NLQ96MC4 621 aa14.89□□□□□ -0.03
USP4-206ENST00000461553 GZF1Q9H116 711 aaPredicted RBP14.89□□□□□ -0.03
USP4-206ENST00000461553 KCTD10Q9H3F6 313 aa14.89□□□□□ -0.03
USP4-206ENST00000461553 ZSCAN32Q9NX65 697 aa14.89□□□□□ -0.03
USP4-206ENST00000461553 EHD2Q9NZN4 543 aa14.89□□□□□ -0.03
USP4-206ENST00000461553 CCL26Q9Y258 94 aa14.89□□□□□ -0.03
USP4-206ENST00000461553 RALGAPA1Q6GYQ0 2036 aa14.88□□□□□ -0.03
USP4-206ENST00000461553 DMXL1Q9Y485 3027 aa14.88□□□□□ -0.03
USP4-206ENST00000461553 FAM237AA0A1B0GTK4 181 aa14.88□□□□□ -0.03
USP4-206ENST00000461553 A0A1W2PQ27 194 aa14.88□□□□□ -0.03
USP4-206ENST00000461553 A0A1W2PQ64 194 aa14.88□□□□□ -0.03
USP4-206ENST00000461553 A0A1W2PQD8 194 aa14.88□□□□□ -0.03
USP4-206ENST00000461553 A8MXQ7 604 aa14.88□□□□□ -0.03
USP4-206ENST00000461553 FAM163BP0C2L3 166 aa14.88□□□□□ -0.03
USP4-206ENST00000461553 USP17L7P0C7H9 530 aa14.88□□□□□ -0.03
USP4-206ENST00000461553 PRR29P0C7W0 189 aa14.88□□□□□ -0.03
USP4-206ENST00000461553 CHRNB1P11230 501 aa14.88□□□□□ -0.03
USP4-206ENST00000461553 PDE6CP51160 858 aa14.88□□□□□ -0.03
USP4-206ENST00000461553 FAM160A1Q05DH4 1040 aa14.88□□□□□ -0.03
USP4-206ENST00000461553 USP4Q13107 963 aa14.88□□□□□ -0.03
USP4-206ENST00000461553 NCOA4Q13772 614 aa14.88□□□□□ -0.03
USP4-206ENST00000461553 BECN1Q14457 450 aa14.88□□□□□ -0.03
USP4-206ENST00000461553 PON2Q15165 354 aa14.88□□□□□ -0.03
USP4-206ENST00000461553 ZNF667Q5HYK9 610 aa14.88□□□□□ -0.03
USP4-206ENST00000461553 DGKKQ5KSL6 1271 aa14.88□□□□□ -0.03
USP4-206ENST00000461553 CEP135Q66GS9 1140 aa14.88□□□□□ -0.03
USP4-206ENST00000461553 TXNDC11Q6PKC3 985 aa14.88□□□□□ -0.03
USP4-206ENST00000461553 TSSK4Q6SA08 328 aa14.88□□□□□ -0.03
USP4-206ENST00000461553 SCARA5Q6ZMJ2 495 aa14.88□□□□□ -0.03
USP4-206ENST00000461553 DENND5BQ6ZUT9 1274 aa14.88□□□□□ -0.03
USP4-206ENST00000461553 PARD3BQ8TEW8 1205 aa14.88□□□□□ -0.03
USP4-206ENST00000461553 ZNF516Q92618 1163 aa14.88□□□□□ -0.03
USP4-206ENST00000461553 FAM126AQ9BYI3 521 aaPredicted RBP14.88□□□□□ -0.03
USP4-206ENST00000461553 ELOVL4Q9GZR5 314 aa14.88□□□□□ -0.03
USP4-206ENST00000461553 XYLT2Q9H1B5 865 aa14.88□□□□□ -0.03
USP4-206ENST00000461553 VRTNQ9H8Y1 702 aa14.88□□□□□ -0.03
USP4-206ENST00000461553 FRMD4BQ9Y2L6 1034 aa14.88□□□□□ -0.03
USP4-206ENST00000461553 ATP8B3O60423 1300 aa14.88□□□□□ -0.03
USP4-206ENST00000461553 RHOBTB3O94955 611 aa14.87□□□□□ -0.03
USP4-206ENST00000461553 P4HA1P13674 534 aa14.87□□□□□ -0.03
USP4-206ENST00000461553 MTF1Q14872 753 aa14.87□□□□□ -0.03
USP4-206ENST00000461553 KRBA2Q6ZNG9 492 aa14.87□□□□□ -0.03
USP4-206ENST00000461553 B3GALNT2Q8NCR0 500 aa14.87□□□□□ -0.03
USP4-206ENST00000461553 TTC16Q8NEE8 873 aa14.87□□□□□ -0.03
USP4-206ENST00000461553 PLEKHO2Q8TD55 490 aa14.87□□□□□ -0.03
USP4-206ENST00000461553 TMEM174Q8WUU8 243 aa14.87□□□□□ -0.03
USP4-206ENST00000461553 DPEP3Q9H4B8 488 aa14.87□□□□□ -0.03
USP4-206ENST00000461553 EBF3Q9H4W6 596 aa14.87□□□□□ -0.03
USP4-206ENST00000461553 SMYD3Q9H7B4 428 aa14.87□□□□□ -0.03
USP4-206ENST00000461553 DMAC2Q9NW81 257 aa14.87□□□□□ -0.03
USP4-206ENST00000461553 CEP250Q9BV73 2442 aa14.87□□□□□ -0.03
USP4-206ENST00000461553 F8VP50 259 aa14.86□□□□□ -0.03
USP4-206ENST00000461553 PTPN1P18031 435 aaKnown RBP14.86□□□□□ -0.03
USP4-206ENST00000461553 PIK3CAP42336 1068 aa14.86□□□□□ -0.03
USP4-206ENST00000461553 RAP1GAPP47736 663 aa14.86□□□□□ -0.03
USP4-206ENST00000461553 IFNAR2P48551 515 aa14.86□□□□□ -0.03
USP4-206ENST00000461553 NRLP54845 237 aa14.86□□□□□ -0.03
USP4-206ENST00000461553 CLDN10P78369 228 aa14.86□□□□□ -0.03
USP4-206ENST00000461553 AMPD2Q01433 879 aa14.86□□□□□ -0.03
USP4-206ENST00000461553 DPYDQ12882 1025 aa14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms