RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 KLRC1P26715 233 aa8.18□□□□□ -1.1
USP54-208ENST00000461520 CD52P31358 61 aa8.18□□□□□ -1.1
USP54-208ENST00000461520 CIITAP33076 1130 aa8.18□□□□□ -1.1
USP54-208ENST00000461520 CTNNB1P35222 781 aa8.18□□□□□ -1.1
USP54-208ENST00000461520 BTG3Q14201 252 aaPredicted RBP8.18□□□□□ -1.1
USP54-208ENST00000461520 SV2CQ496J9 727 aa8.18□□□□□ -1.1
USP54-208ENST00000461520 VWA3BQ502W6 1294 aa8.18□□□□□ -1.1
USP54-208ENST00000461520 ZNF484Q5JVG2 852 aa8.18□□□□□ -1.1
USP54-208ENST00000461520 ODR4Q5SWX8 454 aa8.18□□□□□ -1.1
USP54-208ENST00000461520 SWSAP1Q6NVH7 229 aa8.18□□□□□ -1.1
USP54-208ENST00000461520 CCDC60Q8IWA6 550 aaPredicted RBP8.18□□□□□ -1.1
USP54-208ENST00000461520 GADD45GIP1Q8TAE8 222 aaPredicted RBP8.18□□□□□ -1.1
USP54-208ENST00000461520 NEK9Q8TD19 979 aa8.18□□□□□ -1.1
USP54-208ENST00000461520 PLEKHO2Q8TD55 490 aa8.18□□□□□ -1.1
USP54-208ENST00000461520 MICAL1Q8TDZ2 1067 aa8.18□□□□□ -1.1
USP54-208ENST00000461520 FRS2Q8WU20 508 aa8.18□□□□□ -1.1
USP54-208ENST00000461520 BTN2A2Q8WVV5 523 aa8.18□□□□□ -1.1
USP54-208ENST00000461520 PHKBQ93100 1093 aa8.18□□□□□ -1.1
USP54-208ENST00000461520 PABPC5Q96DU9 382 aaKnown RBP8.18□□□□□ -1.1
USP54-208ENST00000461520 MARCH2Q9P0N8 246 aa8.18□□□□□ -1.1
USP54-208ENST00000461520 TCEAL9Q9UHQ7 104 aa8.18□□□□□ -1.1
USP54-208ENST00000461520 NUDT5Q9UKK9 219 aa8.18□□□□□ -1.1
USP54-208ENST00000461520 NLRC5Q86WI3 1866 aa8.17□□□□□ -1.1
USP54-208ENST00000461520 ITGAVP06756 1048 aa8.17□□□□□ -1.1
USP54-208ENST00000461520 PDIA3P30101 505 aaKnown RBP8.17□□□□□ -1.1
USP54-208ENST00000461520 NAALADL2Q58DX5 795 aa8.17□□□□□ -1.1
USP54-208ENST00000461520 TCEAL5Q5H9L2 206 aa8.17□□□□□ -1.1
USP54-208ENST00000461520 RUFY3Q7L099 469 aa8.17□□□□□ -1.1
USP54-208ENST00000461520 RTN4RL1Q86UN2 441 aaPredicted RBP8.17□□□□□ -1.1
USP54-208ENST00000461520 CMTR2Q8IYT2 770 aaKnown RBP8.17□□□□□ -1.1
USP54-208ENST00000461520 KIAA0319LQ8IZA0 1049 aa8.17□□□□□ -1.1
USP54-208ENST00000461520 P2RX5Q93086 422 aa8.17□□□□□ -1.1
USP54-208ENST00000461520 UIMC1Q96RL1 719 aa8.17□□□□□ -1.1
USP54-208ENST00000461520 SLC26A6Q9BXS9 759 aa8.17□□□□□ -1.1
USP54-208ENST00000461520 ADAM7Q9H2U9 754 aa8.17□□□□□ -1.1
USP54-208ENST00000461520 LUC7LQ9NQ29 371 aaKnown RBP8.17□□□□□ -1.1
USP54-208ENST00000461520 SH3GLB2Q9NR46 395 aa8.17□□□□□ -1.1
USP54-208ENST00000461520 PCDHA10Q9Y5I2 948 aa8.17□□□□□ -1.1
USP54-208ENST00000461520 KAT6AQ92794 2004 aa8.17□□□□□ -1.1
USP54-208ENST00000461520 ARNTLO00327 626 aa8.16□□□□□ -1.1
USP54-208ENST00000461520 ADAMTS3O15072 1205 aa8.16□□□□□ -1.1
USP54-208ENST00000461520 MAGEB2O15479 319 aa8.16□□□□□ -1.1
USP54-208ENST00000461520 RPS6KA5O75582 802 aa8.16□□□□□ -1.1
USP54-208ENST00000461520 MMP1P03956 469 aa8.16□□□□□ -1.1
USP54-208ENST00000461520 TCF3P15923 654 aa8.16□□□□□ -1.1
USP54-208ENST00000461520 SARSP49591 514 aaKnown RBP8.16□□□□□ -1.1
USP54-208ENST00000461520 CRYBB1P53674 252 aaPredicted RBP8.16□□□□□ -1.1
USP54-208ENST00000461520 SLURP1P55000 103 aa8.16□□□□□ -1.1
USP54-208ENST00000461520 SLC9A5Q14940 896 aa8.16□□□□□ -1.1
USP54-208ENST00000461520 RALGAPA2Q2PPJ7 1873 aa8.16□□□□□ -1.1
USP54-208ENST00000461520 PRR16Q569H4 304 aa8.16□□□□□ -1.1
USP54-208ENST00000461520 B3GNT8Q7Z7M8 397 aa8.16□□□□□ -1.1
USP54-208ENST00000461520 CKAP2LQ8IYA6 745 aa8.16□□□□□ -1.1
USP54-208ENST00000461520 FAM177A1Q8N128 213 aaPredicted RBP8.16□□□□□ -1.1
USP54-208ENST00000461520 LENG9Q96B70 501 aa8.16□□□□□ -1.1
USP54-208ENST00000461520 ZNF274Q96GC6 653 aaPredicted RBP8.16□□□□□ -1.1
USP54-208ENST00000461520 FAM167AQ96KS9 214 aa8.16□□□□□ -1.1
USP54-208ENST00000461520 C22orf23Q9BZE7 217 aa8.16□□□□□ -1.1
USP54-208ENST00000461520 TMX1Q9H3N1 280 aa8.16□□□□□ -1.1
USP54-208ENST00000461520 ERVK-5Q9HDB9 667 aa8.16□□□□□ -1.1
USP54-208ENST00000461520 RGS18Q9NS28 235 aa8.16□□□□□ -1.1
USP54-208ENST00000461520 C1orf112Q9NSG2 853 aa8.16□□□□□ -1.1
USP54-208ENST00000461520 VPS54Q9P1Q0 977 aa8.16□□□□□ -1.1
USP54-208ENST00000461520 GABBR1Q9UBS5 961 aa8.16□□□□□ -1.1
USP54-208ENST00000461520 PRKAG3Q9UGI9 489 aa8.16□□□□□ -1.1
USP54-208ENST00000461520 TMEFF2Q9UIK5 374 aaPredicted RBP8.16□□□□□ -1.1
USP54-208ENST00000461520 FAM50BQ9Y247 325 aa8.16□□□□□ -1.1
USP54-208ENST00000461520 GINS2Q9Y248 185 aa8.16□□□□□ -1.1
USP54-208ENST00000461520 NOC2LQ9Y3T9 749 aaKnown RBP8.16□□□□□ -1.1
USP54-208ENST00000461520 ATG2AQ2TAZ0 1938 aa8.15□□□□□ -1.1
USP54-208ENST00000461520 DENND3A2RUS2 1198 aa8.15□□□□□ -1.1
USP54-208ENST00000461520 H3BQ06 376 aaPredicted RBP8.15□□□□□ -1.1
USP54-208ENST00000461520 GRM6O15303 877 aa8.15□□□□□ -1.1
USP54-208ENST00000461520 MSH4O15457 936 aa8.15□□□□□ -1.1
USP54-208ENST00000461520 EDIL3O43854 480 aa8.15□□□□□ -1.1
USP54-208ENST00000461520 DEXIO95424 95 aa8.15□□□□□ -1.1
USP54-208ENST00000461520 C22orf31O95567 290 aa8.15□□□□□ -1.1
USP54-208ENST00000461520 TMOD1P28289 359 aa8.15□□□□□ -1.1
USP54-208ENST00000461520 SFNP31947 248 aa8.15□□□□□ -1.1
USP54-208ENST00000461520 ECI1P42126 302 aa8.15□□□□□ -1.1
USP54-208ENST00000461520 NLRP5P59047 1200 aa8.15□□□□□ -1.1
USP54-208ENST00000461520 CCT2P78371 535 aaKnown RBP8.15□□□□□ -1.1
USP54-208ENST00000461520 SSRP1Q08945 709 aaKnown RBP8.15□□□□□ -1.1
USP54-208ENST00000461520 TOB2Q14106 344 aaPredicted RBP8.15□□□□□ -1.1
USP54-208ENST00000461520 SF1Q15637 639 aaKnown RBP8.15□□□□□ -1.1
USP54-208ENST00000461520 TMEM266Q2M3C6 531 aa8.15□□□□□ -1.1
USP54-208ENST00000461520 MRM1Q6IN84 353 aaKnown RBP8.15□□□□□ -1.1
USP54-208ENST00000461520 EP400NLQ6ZTU2 488 aa8.15□□□□□ -1.1
USP54-208ENST00000461520 SLC24A5Q71RS6 500 aa8.15□□□□□ -1.1
USP54-208ENST00000461520 ZNF227Q86WZ6 799 aa8.15□□□□□ -1.1
USP54-208ENST00000461520 PPP2R3CQ969Q6 453 aa8.15□□□□□ -1.1
USP54-208ENST00000461520 NOX5Q96PH1 765 aa8.15□□□□□ -1.1
USP54-208ENST00000461520 RIT2Q99578 217 aa8.15□□□□□ -1.1
USP54-208ENST00000461520 TM6SF1Q9BZW5 370 aa8.15□□□□□ -1.1
USP54-208ENST00000461520 NCOA5Q9HCD5 579 aaKnown RBP8.15□□□□□ -1.1
USP54-208ENST00000461520 CLDND1Q9NY35 253 aa8.15□□□□□ -1.1
USP54-208ENST00000461520 ST3GAL5Q9UNP4 418 aa8.15□□□□□ -1.1
USP54-208ENST00000461520 PCDHB7Q9Y5E2 793 aa8.15□□□□□ -1.1
USP54-208ENST00000461520 CYP46A1Q9Y6A2 500 aa8.15□□□□□ -1.1
USP54-208ENST00000461520 MRPL42Q9Y6G3 142 aaKnown RBP8.15□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms