RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 TTC39CQ8N584 583 aa11.64□□□□□ -0.55
SCN9A-205ENST00000454569 TTC9BQ8N6N2 239 aa11.64□□□□□ -0.55
SCN9A-205ENST00000454569 ZMIZ2Q8NF64 920 aa11.64□□□□□ -0.55
SCN9A-205ENST00000454569 RIN2Q8WYP3 895 aaPredicted RBP11.64□□□□□ -0.55
SCN9A-205ENST00000454569 SECISBP2LQ93073 1101 aaKnown RBP11.64□□□□□ -0.55
SCN9A-205ENST00000454569 MYLPFQ96A32 169 aa11.64□□□□□ -0.55
SCN9A-205ENST00000454569 ARHGEF26Q96DR7 871 aa11.64□□□□□ -0.55
SCN9A-205ENST00000454569 TMEM169Q96HH4 297 aa11.64□□□□□ -0.55
SCN9A-205ENST00000454569 KCNK16Q96T55 309 aa11.64□□□□□ -0.55
SCN9A-205ENST00000454569 TTPALQ9BTX7 342 aa11.64□□□□□ -0.55
SCN9A-205ENST00000454569 ZCWPW1Q9H0M4 648 aa11.64□□□□□ -0.55
SCN9A-205ENST00000454569 ISCUQ9H1K1 167 aa11.64□□□□□ -0.55
SCN9A-205ENST00000454569 MTIF3Q9H2K0 278 aaKnown RBP11.64□□□□□ -0.55
SCN9A-205ENST00000454569 CRISPLD1Q9H336 500 aa11.64□□□□□ -0.55
SCN9A-205ENST00000454569 FAM124BQ9H5Z6 455 aaPredicted RBP11.64□□□□□ -0.55
SCN9A-205ENST00000454569 CERS4Q9HA82 394 aa11.64□□□□□ -0.55
SCN9A-205ENST00000454569 DSEQ9UL01 958 aa11.64□□□□□ -0.55
SCN9A-205ENST00000454569 MYO16Q9Y6X6 1858 aa11.64□□□□□ -0.55
SCN9A-205ENST00000454569 M0QYV0 167 aa11.63□□□□□ -0.55
SCN9A-205ENST00000454569 GJB6O95452 261 aa11.63□□□□□ -0.55
SCN9A-205ENST00000454569 SOD2P04179 222 aa11.63□□□□□ -0.55
SCN9A-205ENST00000454569 PAX3P23760 479 aa11.63□□□□□ -0.55
SCN9A-205ENST00000454569 CDH5P33151 784 aaPredicted RBP11.63□□□□□ -0.55
SCN9A-205ENST00000454569 RGS7P49802 495 aa11.63□□□□□ -0.55
SCN9A-205ENST00000454569 ARPP19P56211 112 aa11.63□□□□□ -0.55
SCN9A-205ENST00000454569 ERVFC1P60507 584 aa11.63□□□□□ -0.55
SCN9A-205ENST00000454569 PDE4CQ08493 712 aa11.63□□□□□ -0.55
SCN9A-205ENST00000454569 CAMK1Q14012 370 aa11.63□□□□□ -0.55
SCN9A-205ENST00000454569 USP41Q3LFD5 358 aa11.63□□□□□ -0.55
SCN9A-205ENST00000454569 SLC39A12Q504Y0 691 aa11.63□□□□□ -0.55
SCN9A-205ENST00000454569 PMF1Q6P1K2 205 aa11.63□□□□□ -0.55
SCN9A-205ENST00000454569 VPS52Q8N1B4 723 aa11.63□□□□□ -0.55
SCN9A-205ENST00000454569 STKLD1Q8NE28 680 aa11.63□□□□□ -0.55
SCN9A-205ENST00000454569 MYCBPAPQ8TBZ2 947 aa11.63□□□□□ -0.55
SCN9A-205ENST00000454569 PGLYRP2Q96PD5 576 aa11.63□□□□□ -0.55
SCN9A-205ENST00000454569 CPXM1Q96SM3 734 aa11.63□□□□□ -0.55
SCN9A-205ENST00000454569 HNRNPABQ99729 332 aaKnown RBP11.63□□□□□ -0.55
SCN9A-205ENST00000454569 SMOQ99835 787 aa11.63□□□□□ -0.55
SCN9A-205ENST00000454569 CLSTN3Q9BQT9 956 aa11.63□□□□□ -0.55
SCN9A-205ENST00000454569 HERC2P3Q9BVR0 1158 aa11.63□□□□□ -0.55
SCN9A-205ENST00000454569 IRX2Q9BZI1 471 aaPredicted RBP11.63□□□□□ -0.55
SCN9A-205ENST00000454569 THAP2Q9H0W7 228 aa11.63□□□□□ -0.55
SCN9A-205ENST00000454569 PRO3102Q9H379 93 aa11.63□□□□□ -0.55
SCN9A-205ENST00000454569 PCDHB12Q9Y5F1 795 aa11.63□□□□□ -0.55
SCN9A-205ENST00000454569 TRIOBPQ9H2D6 2365 aa11.63□□□□□ -0.55
SCN9A-205ENST00000454569 GRM6O15303 877 aa11.62□□□□□ -0.55
SCN9A-205ENST00000454569 LILRB3O75022 631 aa11.62□□□□□ -0.55
SCN9A-205ENST00000454569 RTN2O75298 545 aa11.62□□□□□ -0.55
SCN9A-205ENST00000454569 ABCB4P21439 1286 aa11.62□□□□□ -0.55
SCN9A-205ENST00000454569 BDNFP23560 247 aa11.62□□□□□ -0.55
SCN9A-205ENST00000454569 PCSK1P29120 753 aa11.62□□□□□ -0.55
SCN9A-205ENST00000454569 CTNNB1P35222 781 aa11.62□□□□□ -0.55
SCN9A-205ENST00000454569 GPR15P49685 360 aa11.62□□□□□ -0.55
SCN9A-205ENST00000454569 PLCB3Q01970 1234 aa11.62□□□□□ -0.55
SCN9A-205ENST00000454569 DSG1Q02413 1049 aa11.62□□□□□ -0.55
SCN9A-205ENST00000454569 CENPCQ03188 943 aa11.62□□□□□ -0.55
SCN9A-205ENST00000454569 TAP1Q03518 808 aa11.62□□□□□ -0.55
SCN9A-205ENST00000454569 ELAVL2Q12926 359 aaKnown RBP11.62□□□□□ -0.55
SCN9A-205ENST00000454569 PTPN20Q4JDL3 420 aa11.62□□□□□ -0.55
SCN9A-205ENST00000454569 C6orf132Q5T0Z8 1188 aa11.62□□□□□ -0.55
SCN9A-205ENST00000454569 RNF19BQ6ZMZ0 732 aa11.62□□□□□ -0.55
SCN9A-205ENST00000454569 CLEC20AQ6ZU45 233 aa11.62□□□□□ -0.55
SCN9A-205ENST00000454569 FAM35AQ86V20 835 aa11.62□□□□□ -0.55
SCN9A-205ENST00000454569 FMNL3Q8IVF7 1028 aa11.62□□□□□ -0.55
SCN9A-205ENST00000454569 MCOLN2Q8IZK6 566 aa11.62□□□□□ -0.55
SCN9A-205ENST00000454569 THEM5Q8N1Q8 247 aa11.62□□□□□ -0.55
SCN9A-205ENST00000454569 SPATA18Q8TC71 538 aa11.62□□□□□ -0.55
SCN9A-205ENST00000454569 SPPL3Q8TCT6 385 aa11.62□□□□□ -0.55
SCN9A-205ENST00000454569 SLC35F5Q8WV83 523 aa11.62□□□□□ -0.55
SCN9A-205ENST00000454569 KHSRPQ92945 711 aaKnown RBP eCLIP11.62□□□□□ -0.558e-8■■■■■ 29.1
SCN9A-205ENST00000454569 TNIP3Q96KP6 325 aa11.62□□□□□ -0.55
SCN9A-205ENST00000454569 PPP1R13BQ96KQ4 1090 aa11.62□□□□□ -0.55
SCN9A-205ENST00000454569 C11orf70Q9BRQ4 267 aa11.62□□□□□ -0.55
SCN9A-205ENST00000454569 ZBP1Q9H171 429 aa11.62□□□□□ -0.55
SCN9A-205ENST00000454569 LHX5Q9H2C1 402 aa11.62□□□□□ -0.55
SCN9A-205ENST00000454569 PDCL3Q9H2J4 239 aa11.62□□□□□ -0.55
SCN9A-205ENST00000454569 NKX2-4Q9H2Z4 354 aa11.62□□□□□ -0.55
SCN9A-205ENST00000454569 LZTFL1Q9NQ48 299 aa11.62□□□□□ -0.55
SCN9A-205ENST00000454569 KIAA1257Q9ULG3 409 aa11.62□□□□□ -0.55
SCN9A-205ENST00000454569 CDY1Q9Y6F8 540 aa11.62□□□□□ -0.55
SCN9A-205ENST00000454569 WDR27A2RRH5 827 aa11.62□□□□□ -0.55
SCN9A-205ENST00000454569 EPOPA6NHQ4 379 aa11.62□□□□□ -0.55
SCN9A-205ENST00000454569 MED7O43513 233 aa11.62□□□□□ -0.55
SCN9A-205ENST00000454569 ZNF500O60304 480 aaPredicted RBP11.62□□□□□ -0.55
SCN9A-205ENST00000454569 SOAT2O75908 522 aa11.62□□□□□ -0.55
SCN9A-205ENST00000454569 ERBB2P04626 1255 aa11.62□□□□□ -0.55
SCN9A-205ENST00000454569 GZMAP12544 262 aa11.62□□□□□ -0.55
SCN9A-205ENST00000454569 CYP2F1P24903 491 aa11.62□□□□□ -0.55
SCN9A-205ENST00000454569 ANXA13P27216 316 aa11.62□□□□□ -0.55
SCN9A-205ENST00000454569 OR1D2P34982 312 aa11.62□□□□□ -0.55
SCN9A-205ENST00000454569 IRS1P35568 1242 aa11.62□□□□□ -0.55
SCN9A-205ENST00000454569 VAV2P52735 878 aa11.62□□□□□ -0.55
SCN9A-205ENST00000454569 SPA17Q15506 151 aa11.62□□□□□ -0.55
SCN9A-205ENST00000454569 PSMD5Q16401 504 aa11.62□□□□□ -0.55
SCN9A-205ENST00000454569 CYP4A22Q5TCH4 519 aa11.62□□□□□ -0.55
SCN9A-205ENST00000454569 MMS22LQ6ZRQ5 1243 aa11.62□□□□□ -0.55
SCN9A-205ENST00000454569 MON1BQ7L1V2 547 aa11.62□□□□□ -0.55
SCN9A-205ENST00000454569 GPRIN1Q7Z2K8 1008 aa11.62□□□□□ -0.55
SCN9A-205ENST00000454569 ANKRD52Q8NB46 1076 aa11.62□□□□□ -0.55
SCN9A-205ENST00000454569 ATAD1Q8NBU5 361 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms