RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 DDX1Q92499 740 aaKnown RBP7.57□□□□□ -1.2
VPS41-208ENST00000448833 SYAP1Q96A49 352 aaPredicted RBP7.57□□□□□ -1.2
VPS41-208ENST00000448833 DHX58Q96C10 678 aa7.57□□□□□ -1.2
VPS41-208ENST00000448833 RSPRY1Q96DX4 576 aa7.57□□□□□ -1.2
VPS41-208ENST00000448833 LOXL4Q96JB6 756 aa7.57□□□□□ -1.2
VPS41-208ENST00000448833 MMS19Q96T76 1030 aa7.57□□□□□ -1.2
VPS41-208ENST00000448833 RTKNQ9BST9 563 aa7.57□□□□□ -1.2
VPS41-208ENST00000448833 MTMR12Q9C0I1 747 aa7.57□□□□□ -1.2
VPS41-208ENST00000448833 SNX25Q9H3E2 840 aa7.57□□□□□ -1.2
VPS41-208ENST00000448833 TFIP11Q9UBB9 837 aaKnown RBP7.57□□□□□ -1.2
VPS41-208ENST00000448833 USP25Q9UHP3 1055 aa7.57□□□□□ -1.2
VPS41-208ENST00000448833 CDV3Q9UKY7 258 aaKnown RBP7.57□□□□□ -1.2
VPS41-208ENST00000448833 SLC8A2Q9UPR5 921 aa7.57□□□□□ -1.2
VPS41-208ENST00000448833 COL4A3Q01955 1670 aa7.57□□□□□ -1.2
VPS41-208ENST00000448833 ATP8B3O60423 1300 aa7.56□□□□□ -1.2
VPS41-208ENST00000448833 A0A087X0B3 334 aa7.56□□□□□ -1.2
VPS41-208ENST00000448833 CHURC1-FNTBB4DL54 471 aa7.56□□□□□ -1.2
VPS41-208ENST00000448833 SLC9A3R1O14745 358 aaPredicted RBP7.56□□□□□ -1.2
VPS41-208ENST00000448833 POLR2DO15514 142 aaKnown RBP7.56□□□□□ -1.2
VPS41-208ENST00000448833 ATMINO43313 823 aaPredicted RBP7.56□□□□□ -1.2
VPS41-208ENST00000448833 PHACTR2O75167 634 aa7.56□□□□□ -1.2
VPS41-208ENST00000448833 TACC1O75410 805 aa7.56□□□□□ -1.2
VPS41-208ENST00000448833 AKAP3O75969 853 aa7.56□□□□□ -1.2
VPS41-208ENST00000448833 PRAMEF12O95522 483 aa7.56□□□□□ -1.2
VPS41-208ENST00000448833 STAU1O95793 577 aaKnown RBP7.56□□□□□ -1.2
VPS41-208ENST00000448833 ZSCAN22P10073 491 aaPredicted RBP7.56□□□□□ -1.2
VPS41-208ENST00000448833 TDGF1P13385 188 aa7.56□□□□□ -1.2
VPS41-208ENST00000448833 P4HA1P13674 534 aa7.56□□□□□ -1.2
VPS41-208ENST00000448833 TCF3P15923 654 aa7.56□□□□□ -1.2
VPS41-208ENST00000448833 HDCP19113 662 aa7.56□□□□□ -1.2
VPS41-208ENST00000448833 WARSP23381 471 aaKnown RBP7.56□□□□□ -1.2
VPS41-208ENST00000448833 ACAT1P24752 427 aaKnown RBP7.56□□□□□ -1.2
VPS41-208ENST00000448833 GRIK1P39086 918 aa7.56□□□□□ -1.2
VPS41-208ENST00000448833 ME1P48163 572 aa7.56□□□□□ -1.2
VPS41-208ENST00000448833 IFNAR2P48551 515 aa7.56□□□□□ -1.2
VPS41-208ENST00000448833 NOP14P78316 857 aaKnown RBP7.56□□□□□ -1.2
VPS41-208ENST00000448833 SATB1Q01826 763 aa7.56□□□□□ -1.2
VPS41-208ENST00000448833 CYP27A1Q02318 531 aa7.56□□□□□ -1.2
VPS41-208ENST00000448833 MMRN1Q13201 1228 aa7.56□□□□□ -1.2
VPS41-208ENST00000448833 PSMD6Q15008 389 aa7.56□□□□□ -1.2
VPS41-208ENST00000448833 E2F4Q16254 413 aa7.56□□□□□ -1.2
VPS41-208ENST00000448833 DDR2Q16832 855 aa7.56□□□□□ -1.2
VPS41-208ENST00000448833 RSPO4Q2I0M5 234 aaPredicted RBP7.56□□□□□ -1.2
VPS41-208ENST00000448833 PREPLQ4J6C6 727 aaPredicted RBP7.56□□□□□ -1.2
VPS41-208ENST00000448833 TMEM196Q5HYL7 178 aa7.56□□□□□ -1.2
VPS41-208ENST00000448833 TXNDC8Q6A555 127 aa7.56□□□□□ -1.2
VPS41-208ENST00000448833 PRR23BQ6ZRT6 265 aa7.56□□□□□ -1.2
VPS41-208ENST00000448833 DENND5BQ6ZUT9 1274 aa7.56□□□□□ -1.2
VPS41-208ENST00000448833 CEP68Q76N32 757 aa7.56□□□□□ -1.2
VPS41-208ENST00000448833 EPM2AIP1Q7L775 607 aaPredicted RBP7.56□□□□□ -1.2
VPS41-208ENST00000448833 TRAPPC11Q7Z392 1133 aa7.56□□□□□ -1.2
VPS41-208ENST00000448833 LIMS2Q7Z4I7 341 aa7.56□□□□□ -1.2
VPS41-208ENST00000448833 ARHGAP30Q7Z6I6 1101 aaPredicted RBP7.56□□□□□ -1.2
VPS41-208ENST00000448833 TMEM150AQ86TG1 271 aa7.56□□□□□ -1.2
VPS41-208ENST00000448833 WDR5BQ86VZ2 330 aa7.56□□□□□ -1.2
VPS41-208ENST00000448833 DDX42Q86XP3 938 aaKnown RBP eCLIP7.56□□□□□ -1.2
VPS41-208ENST00000448833 GPIHBP1Q8IV16 184 aa7.56□□□□□ -1.2
VPS41-208ENST00000448833 SCN4BQ8IWT1 228 aa7.56□□□□□ -1.2
VPS41-208ENST00000448833 C12orf56Q8IXR9 622 aa7.56□□□□□ -1.2
VPS41-208ENST00000448833 TMEM130Q8N3G9 435 aa7.56□□□□□ -1.2
VPS41-208ENST00000448833 DCLK2Q8N568 766 aa7.56□□□□□ -1.2
VPS41-208ENST00000448833 STKLD1Q8NE28 680 aa7.56□□□□□ -1.2
VPS41-208ENST00000448833 CXorf38Q8TB03 319 aa7.56□□□□□ -1.2
VPS41-208ENST00000448833 MYCBPAPQ8TBZ2 947 aa7.56□□□□□ -1.2
VPS41-208ENST00000448833 TMEM174Q8WUU8 243 aa7.56□□□□□ -1.2
VPS41-208ENST00000448833 USP13Q92995 863 aaPredicted RBP7.56□□□□□ -1.2
VPS41-208ENST00000448833 CCDC47Q96A33 483 aaKnown RBP7.56□□□□□ -1.2
VPS41-208ENST00000448833 RMDN1Q96DB5 314 aa7.56□□□□□ -1.2
VPS41-208ENST00000448833 ZFYVE19Q96K21 471 aa7.56□□□□□ -1.2
VPS41-208ENST00000448833 LRRC3BQ96PB8 259 aa7.56□□□□□ -1.2
VPS41-208ENST00000448833 PKMYT1Q99640 499 aa7.56□□□□□ -1.2
VPS41-208ENST00000448833 SYT15Q9BQS2 421 aa7.56□□□□□ -1.2
VPS41-208ENST00000448833 TMLHEQ9NVH6 421 aa7.56□□□□□ -1.2
VPS41-208ENST00000448833 DUS2Q9NX74 493 aaKnown RBP7.56□□□□□ -1.2
VPS41-208ENST00000448833 TRPM5Q9NZQ8 1165 aa7.56□□□□□ -1.2
VPS41-208ENST00000448833 SIX4Q9UIU6 781 aa7.56□□□□□ -1.2
VPS41-208ENST00000448833 USP18Q9UMW8 372 aa7.56□□□□□ -1.2
VPS41-208ENST00000448833 NRG2O14511 850 aaPredicted RBP7.55□□□□□ -1.2
VPS41-208ENST00000448833 EXOC3O60645 756 aa7.55□□□□□ -1.2
VPS41-208ENST00000448833 RTN3O95197 1032 aaPredicted RBP7.55□□□□□ -1.2
VPS41-208ENST00000448833 NFATC1O95644 943 aa7.55□□□□□ -1.2
VPS41-208ENST00000448833 SLFN14P0C7P3 912 aa7.55□□□□□ -1.2
VPS41-208ENST00000448833 DLATP10515 647 aaKnown RBP7.55□□□□□ -1.2
VPS41-208ENST00000448833 SOX9P48436 509 aa7.55□□□□□ -1.2
VPS41-208ENST00000448833 FNTBP49356 437 aa7.55□□□□□ -1.2
VPS41-208ENST00000448833 TNK2Q07912 1038 aa7.55□□□□□ -1.2
VPS41-208ENST00000448833 CYP24A1Q07973 514 aa7.55□□□□□ -1.2
VPS41-208ENST00000448833 MTF1Q14872 753 aa7.55□□□□□ -1.2
VPS41-208ENST00000448833 CSRP2Q16527 193 aa7.55□□□□□ -1.2
VPS41-208ENST00000448833 KNOP1Q1ED39 458 aaKnown RBP7.55□□□□□ -1.2
VPS41-208ENST00000448833 BMT2Q1RMZ1 405 aa7.55□□□□□ -1.2
VPS41-208ENST00000448833 WDR72Q3MJ13 1102 aa7.55□□□□□ -1.2
VPS41-208ENST00000448833 TDRD10Q5VZ19 366 aaKnown RBP7.55□□□□□ -1.2
VPS41-208ENST00000448833 TXNDC11Q6PKC3 985 aa7.55□□□□□ -1.2
VPS41-208ENST00000448833 SHC4Q6S5L8 630 aa7.55□□□□□ -1.2
VPS41-208ENST00000448833 NUDT18Q6ZVK8 323 aa7.55□□□□□ -1.2
VPS41-208ENST00000448833 CACNA2D4Q7Z3S7 1137 aa7.55□□□□□ -1.2
VPS41-208ENST00000448833 C11orf74Q86VG3 221 aa7.55□□□□□ -1.2
VPS41-208ENST00000448833 CBWD2Q8IUF1 395 aa7.55□□□□□ -1.2
VPS41-208ENST00000448833 RDH13Q8NBN7 331 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms