RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 SPATA17Q96L03 361 aa16.18■□□□□ 0.18
LIMS3-201ENST00000437679 MYRFLQ96LU7 910 aa16.18■□□□□ 0.18
LIMS3-201ENST00000437679 CEP63Q96MT8 703 aa16.18■□□□□ 0.18
LIMS3-201ENST00000437679 MED10Q9BTT4 135 aa16.18■□□□□ 0.18
LIMS3-201ENST00000437679 TBC1D17Q9HA65 648 aa16.18■□□□□ 0.18
LIMS3-201ENST00000437679 CYP3A43Q9HB55 503 aa16.18■□□□□ 0.18
LIMS3-201ENST00000437679 METTL14Q9HCE5 456 aaKnown RBP16.18■□□□□ 0.18
LIMS3-201ENST00000437679 EHD2Q9NZN4 543 aa16.18■□□□□ 0.18
LIMS3-201ENST00000437679 CTNND2Q9UQB3 1225 aa16.18■□□□□ 0.18
LIMS3-201ENST00000437679 DENND4CQ5VZ89 1909 aa16.17■□□□□ 0.18
LIMS3-201ENST00000437679 ZNF638Q14966 1978 aaKnown RBP16.17■□□□□ 0.18
LIMS3-201ENST00000437679 NUP210Q8TEM1 1887 aaPredicted RBP16.17■□□□□ 0.18
LIMS3-201ENST00000437679 PPP1R3GB7ZBB8 358 aa16.17■□□□□ 0.18
LIMS3-201ENST00000437679 ZNF263O14978 683 aa16.17■□□□□ 0.18
LIMS3-201ENST00000437679 AOC1P19801 751 aa16.17■□□□□ 0.18
LIMS3-201ENST00000437679 BMP6P22004 513 aa16.17■□□□□ 0.18
LIMS3-201ENST00000437679 WEE1P30291 646 aa16.17■□□□□ 0.18
LIMS3-201ENST00000437679 GDI1P31150 447 aa16.17■□□□□ 0.18
LIMS3-201ENST00000437679 NDST1P52848 882 aa16.17■□□□□ 0.18
LIMS3-201ENST00000437679 NUBP1P53384 320 aa16.17■□□□□ 0.18
LIMS3-201ENST00000437679 PRKCQQ04759 706 aa16.17■□□□□ 0.18
LIMS3-201ENST00000437679 MLF2Q15773 248 aaPredicted RBP16.17■□□□□ 0.18
LIMS3-201ENST00000437679 IER5LQ5T953 404 aa16.17■□□□□ 0.18
LIMS3-201ENST00000437679 CWF19L1Q69YN2 538 aaKnown RBP16.17■□□□□ 0.18
LIMS3-201ENST00000437679 PHLDB3Q6NSJ2 640 aa16.17■□□□□ 0.18
LIMS3-201ENST00000437679 FOXR2Q6PJQ5 311 aa16.17■□□□□ 0.18
LIMS3-201ENST00000437679 DENND5BQ6ZUT9 1274 aa16.17■□□□□ 0.18
LIMS3-201ENST00000437679 FILIP1Q7Z7B0 1213 aa16.17■□□□□ 0.18
LIMS3-201ENST00000437679 TMEM150AQ86TG1 271 aa16.17■□□□□ 0.18
LIMS3-201ENST00000437679 TMEM105Q8N8V8 129 aa16.17■□□□□ 0.18
LIMS3-201ENST00000437679 DNASE1L2Q92874 299 aa16.17■□□□□ 0.18
LIMS3-201ENST00000437679 IRF7Q92985 503 aa16.17■□□□□ 0.18
LIMS3-201ENST00000437679 C8orf48Q96LL4 319 aa16.17■□□□□ 0.18
LIMS3-201ENST00000437679 SLC46A2Q9BY10 475 aa16.17■□□□□ 0.18
LIMS3-201ENST00000437679 B3GNT5Q9BYG0 378 aa16.17■□□□□ 0.18
LIMS3-201ENST00000437679 BCO2Q9BYV7 579 aa16.17■□□□□ 0.18
LIMS3-201ENST00000437679 ZNF518BQ9C0D4 1074 aa16.17■□□□□ 0.18
LIMS3-201ENST00000437679 DNAI2Q9GZS0 605 aa16.17■□□□□ 0.18
LIMS3-201ENST00000437679 NIF3L1Q9GZT8 377 aa16.17■□□□□ 0.18
LIMS3-201ENST00000437679 APOBEC3GQ9HC16 384 aaKnown RBP16.17■□□□□ 0.18
LIMS3-201ENST00000437679 RAB20Q9NX57 234 aa16.17■□□□□ 0.18
LIMS3-201ENST00000437679 KIAA1468Q9P260 1216 aa16.17■□□□□ 0.18
LIMS3-201ENST00000437679 SOBPA7XYQ1 873 aa16.16■□□□□ 0.18
LIMS3-201ENST00000437679 F8VP50 259 aa16.16■□□□□ 0.18
LIMS3-201ENST00000437679 CLDN5O00501 218 aa16.16■□□□□ 0.18
LIMS3-201ENST00000437679 AVPR1AP37288 418 aa16.16■□□□□ 0.18
LIMS3-201ENST00000437679 STARD6P59095 220 aa16.16■□□□□ 0.18
LIMS3-201ENST00000437679 PAK1Q13153 545 aa16.16■□□□□ 0.18
LIMS3-201ENST00000437679 CCDC40Q4G0X9 1142 aa16.16■□□□□ 0.18
LIMS3-201ENST00000437679 WDR44Q5JSH3 913 aa16.16■□□□□ 0.18
LIMS3-201ENST00000437679 TTI2Q6NXR4 508 aa16.16■□□□□ 0.18
LIMS3-201ENST00000437679 FRMD5Q7Z6J6 570 aa16.16■□□□□ 0.18
LIMS3-201ENST00000437679 ACOT1Q86TX2 421 aa16.16■□□□□ 0.18
LIMS3-201ENST00000437679 GPIHBP1Q8IV16 184 aa16.16■□□□□ 0.18
LIMS3-201ENST00000437679 CMTM8Q8IZV2 173 aa16.16■□□□□ 0.18
LIMS3-201ENST00000437679 MAB21L3Q8N8X9 362 aa16.16■□□□□ 0.18
LIMS3-201ENST00000437679 OBP2AQ9NY56 170 aa16.16■□□□□ 0.18
LIMS3-201ENST00000437679 GREB1Q4ZG55 1949 aa16.15■□□□□ 0.18
LIMS3-201ENST00000437679 OBSL1O75147 1896 aa16.15■□□□□ 0.18
LIMS3-201ENST00000437679 STX17P56962 302 aa16.15■□□□□ 0.18
LIMS3-201ENST00000437679 INCA1Q0VD86 236 aa16.15■□□□□ 0.18
LIMS3-201ENST00000437679 TXNDC8Q6A555 127 aa16.15■□□□□ 0.18
LIMS3-201ENST00000437679 CLEC17AQ6ZS10 378 aa16.15■□□□□ 0.18
LIMS3-201ENST00000437679 FAM35AQ86V20 835 aa16.15■□□□□ 0.18
LIMS3-201ENST00000437679 MON1AQ86VX9 555 aa16.15■□□□□ 0.18
LIMS3-201ENST00000437679 CRYBG2Q8N1P7 616 aa16.15■□□□□ 0.18
LIMS3-201ENST00000437679 SEMA4DQ92854 862 aa16.15■□□□□ 0.18
LIMS3-201ENST00000437679 RSPRY1Q96DX4 576 aa16.15■□□□□ 0.18
LIMS3-201ENST00000437679 FAM122AQ96E09 287 aa16.15■□□□□ 0.18
LIMS3-201ENST00000437679 SMARCD1Q96GM5 515 aa16.15■□□□□ 0.18
LIMS3-201ENST00000437679 FAXDC2Q96IV6 333 aa16.15■□□□□ 0.18
LIMS3-201ENST00000437679 DUSP9Q99956 384 aaKnown RBP16.15■□□□□ 0.18
LIMS3-201ENST00000437679 F5P12259 2224 aa16.15■□□□□ 0.18
LIMS3-201ENST00000437679 MYH10P35580 1976 aa16.15■□□□□ 0.18
LIMS3-201ENST00000437679 CHADO15335 359 aa16.14■□□□□ 0.17
LIMS3-201ENST00000437679 PI15O43692 258 aa16.14■□□□□ 0.17
LIMS3-201ENST00000437679 LRRN2O75325 713 aa16.14■□□□□ 0.17
LIMS3-201ENST00000437679 TADA3O75528 432 aa16.14■□□□□ 0.17
LIMS3-201ENST00000437679 PRAMEF12O95522 483 aa16.14■□□□□ 0.17
LIMS3-201ENST00000437679 CD58P19256 250 aa16.14■□□□□ 0.17
LIMS3-201ENST00000437679 PTPN5P54829 565 aa16.14■□□□□ 0.17
LIMS3-201ENST00000437679 ORC1Q13415 861 aa16.14■□□□□ 0.17
LIMS3-201ENST00000437679 CBWD6Q4V339 395 aa16.14■□□□□ 0.17
LIMS3-201ENST00000437679 CBWD3Q5JTY5 395 aa16.14■□□□□ 0.17
LIMS3-201ENST00000437679 CBWD5Q5RIA9 395 aa16.14■□□□□ 0.17
LIMS3-201ENST00000437679 TPRG1Q6ZUI0 275 aa16.14■□□□□ 0.17
LIMS3-201ENST00000437679 TTC39CQ8N584 583 aa16.14■□□□□ 0.17
LIMS3-201ENST00000437679 CELF5Q8N6W0 485 aaKnown RBP16.14■□□□□ 0.17
LIMS3-201ENST00000437679 BPIFB1Q8TDL5 484 aa16.14■□□□□ 0.17
LIMS3-201ENST00000437679 CSGALNACT1Q8TDX6 532 aa16.14■□□□□ 0.17
LIMS3-201ENST00000437679 SLC35C1Q96A29 364 aa16.14■□□□□ 0.17
LIMS3-201ENST00000437679 GBP4Q96PP9 640 aa16.14■□□□□ 0.17
LIMS3-201ENST00000437679 NT5C1AQ9BXI3 368 aa16.14■□□□□ 0.17
LIMS3-201ENST00000437679 CLSTN2Q9H4D0 955 aa16.14■□□□□ 0.17
LIMS3-201ENST00000437679 TRPC7Q9HCX4 862 aa16.14■□□□□ 0.17
LIMS3-201ENST00000437679 DMAP1Q9NPF5 467 aaPredicted RBP16.14■□□□□ 0.17
LIMS3-201ENST00000437679 TRPV5Q9NQA5 729 aa16.14■□□□□ 0.17
LIMS3-201ENST00000437679 HEBP1Q9NRV9 189 aa16.14■□□□□ 0.17
LIMS3-201ENST00000437679 TRPM5Q9NZQ8 1165 aa16.14■□□□□ 0.17
LIMS3-201ENST00000437679 HMGXB4Q9UGU5 601 aa16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms