RNA–Protein interactions for RNA: ENST00000436336.6

CPSF4-204, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CPSF4, Length 1,738 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-204ENST00000436336 KRT82Q9NSB4 513 aa24.32■■□□□ 1.48
CPSF4-204ENST00000436336 CNOT8Q9UFF9 292 aaKnown RBP24.32■■□□□ 1.48
CPSF4-204ENST00000436336 GRXCR1A8MXD5 290 aa24.31■■□□□ 1.48
CPSF4-204ENST00000436336 H0YGN5 161 aa24.31■■□□□ 1.48
CPSF4-204ENST00000436336 OR4Q2P0C623 313 aa24.31■■□□□ 1.48
CPSF4-204ENST00000436336 FAM109BQ6ICB4 259 aaPredicted RBP24.31■■□□□ 1.48
CPSF4-204ENST00000436336 SPATA2LQ8IUW3 424 aaPredicted RBP24.31■■□□□ 1.48
CPSF4-204ENST00000436336 GPR65Q8IYL9 337 aa24.31■■□□□ 1.48
CPSF4-204ENST00000436336 VPS52Q8N1B4 723 aa24.31■■□□□ 1.48
CPSF4-204ENST00000436336 RNF10Q8N5U6 811 aaKnown RBP24.31■■□□□ 1.48
CPSF4-204ENST00000436336 KLHL23Q8NBE8 558 aa24.31■■□□□ 1.48
CPSF4-204ENST00000436336 RFFLQ8WZ73 363 aa24.31■■□□□ 1.48
CPSF4-204ENST00000436336 ARHGEF26Q96DR7 871 aa24.31■■□□□ 1.48
CPSF4-204ENST00000436336 CPXM1Q96SM3 734 aa24.31■■□□□ 1.48
CPSF4-204ENST00000436336 AVENQ9NQS1 362 aaPredicted RBP24.31■■□□□ 1.48
CPSF4-204ENST00000436336 STRIP2Q9ULQ0 834 aa24.31■■□□□ 1.48
CPSF4-204ENST00000436336 PCDHA11Q9Y5I1 949 aa24.31■■□□□ 1.48
CPSF4-204ENST00000436336 CEP290O15078 2479 aa24.3■■□□□ 1.48
CPSF4-204ENST00000436336 XPO1O14980 1071 aaKnown RBP24.3■■□□□ 1.48
CPSF4-204ENST00000436336 CYP1A2P05177 515 aa24.3■■□□□ 1.48
CPSF4-204ENST00000436336 URODP06132 367 aa24.3■■□□□ 1.48
CPSF4-204ENST00000436336 CTNNB1P35222 781 aa24.3■■□□□ 1.48
CPSF4-204ENST00000436336 PLA2G4AP47712 749 aa24.3■■□□□ 1.48
CPSF4-204ENST00000436336 GABRB2P47870 512 aa24.3■■□□□ 1.48
CPSF4-204ENST00000436336 SMARCB1Q12824 385 aa24.3■■□□□ 1.48
CPSF4-204ENST00000436336 TCEAL1Q15170 157 aa24.3■■□□□ 1.48
CPSF4-204ENST00000436336 CLEC20AQ6ZU45 233 aa24.3■■□□□ 1.48
CPSF4-204ENST00000436336 RHOT2Q8IXI1 618 aa24.3■■□□□ 1.48
CPSF4-204ENST00000436336 IPO4Q8TEX9 1081 aaKnown RBP24.3■■□□□ 1.48
CPSF4-204ENST00000436336 MIS12Q9H081 205 aa24.3■■□□□ 1.48
CPSF4-204ENST00000436336 CYLDQ9NQC7 956 aa24.3■■□□□ 1.48
CPSF4-204ENST00000436336 MACROD2A1Z1Q3 448 aa24.3■■□□□ 1.48
CPSF4-204ENST00000436336 TULP2O00295 520 aa24.3■■□□□ 1.48
CPSF4-204ENST00000436336 AP1G2O75843 785 aa24.3■■□□□ 1.48
CPSF4-204ENST00000436336 CPB1P15086 417 aa24.3■■□□□ 1.48
CPSF4-204ENST00000436336 SNX16P57768 344 aa24.3■■□□□ 1.48
CPSF4-204ENST00000436336 GPR17Q13304 367 aa24.3■■□□□ 1.48
CPSF4-204ENST00000436336 C2CD6Q53TS8 623 aa24.3■■□□□ 1.48
CPSF4-204ENST00000436336 SLC8B1Q6J4K2 584 aa24.3■■□□□ 1.48
CPSF4-204ENST00000436336 PMF1Q6P1K2 205 aa24.3■■□□□ 1.48
CPSF4-204ENST00000436336 RSPO2Q6UXX9 243 aaPredicted RBP24.3■■□□□ 1.48
CPSF4-204ENST00000436336 NYAP1Q6ZVC0 841 aa24.3■■□□□ 1.48
CPSF4-204ENST00000436336 FBXO22Q8NEZ5 403 aa24.3■■□□□ 1.48
CPSF4-204ENST00000436336 C18orf8Q96DM3 657 aa24.3■■□□□ 1.48
CPSF4-204ENST00000436336 FUBP3Q96I24 572 aaKnown RBP eCLIP24.3■■□□□ 1.48
CPSF4-204ENST00000436336 HSFY1Q96LI6 401 aa24.3■■□□□ 1.48
CPSF4-204ENST00000436336 SLC4A5Q9BY07 1137 aa24.3■■□□□ 1.48
CPSF4-204ENST00000436336 SYNCQ9H7C4 482 aa24.3■■□□□ 1.48
CPSF4-204ENST00000436336 ST7Q9NRC1 585 aa24.3■■□□□ 1.48
CPSF4-204ENST00000436336 MYO1AQ9UBC5 1043 aa24.3■■□□□ 1.48
CPSF4-204ENST00000436336 SALL4Q9UJQ4 1053 aa24.3■■□□□ 1.48
CPSF4-204ENST00000436336 MYOGP15173 224 aa24.29■■□□□ 1.48
CPSF4-204ENST00000436336 RRM1P23921 792 aa24.29■■□□□ 1.48
CPSF4-204ENST00000436336 RPL34P49207 117 aaKnown RBP24.29■■□□□ 1.48
CPSF4-204ENST00000436336 PTPN14Q15678 1187 aa24.29■■□□□ 1.48
CPSF4-204ENST00000436336 CFAP221Q4G0U5 840 aa24.29■■□□□ 1.48
CPSF4-204ENST00000436336 SLC35G2Q8TBE7 412 aa24.29■■□□□ 1.48
CPSF4-204ENST00000436336 CSNK1G1Q9HCP0 422 aa24.29■■□□□ 1.48
CPSF4-204ENST00000436336 WDR35Q9P2L0 1181 aa24.29■■□□□ 1.48
CPSF4-204ENST00000436336 SSX2IPQ9Y2D8 614 aa24.29■■□□□ 1.48
CPSF4-204ENST00000436336 PAXBP1Q9Y5B6 917 aa24.29■■□□□ 1.48
CPSF4-204ENST00000436336 CDY1Q9Y6F8 540 aa24.29■■□□□ 1.48
CPSF4-204ENST00000436336 C5orf67F2Z3F1 127 aa24.28■■□□□ 1.48
CPSF4-204ENST00000436336 C2CD2LO14523 706 aa24.28■■□□□ 1.48
CPSF4-204ENST00000436336 ATMINO43313 823 aaPredicted RBP24.28■■□□□ 1.48
CPSF4-204ENST00000436336 KIF5CO60282 957 aa24.28■■□□□ 1.48
CPSF4-204ENST00000436336 BEST1O76090 585 aa24.28■■□□□ 1.48
CPSF4-204ENST00000436336 BDNFP23560 247 aa24.28■■□□□ 1.48
CPSF4-204ENST00000436336 GSCP56915 257 aaPredicted RBP24.28■■□□□ 1.48
CPSF4-204ENST00000436336 IFI16Q16666 785 aaKnown RBP24.28■■□□□ 1.48
CPSF4-204ENST00000436336 TMEM110Q86TL2 294 aa24.28■■□□□ 1.48
CPSF4-204ENST00000436336 CALR3Q96L12 384 aaKnown RBP24.28■■□□□ 1.48
CPSF4-204ENST00000436336 SMOQ99835 787 aa24.28■■□□□ 1.48
CPSF4-204ENST00000436336 UBXN6Q9BZV1 441 aa24.28■■□□□ 1.48
CPSF4-204ENST00000436336 ZBP1Q9H171 429 aa24.28■■□□□ 1.48
CPSF4-204ENST00000436336 MRPL17Q9NRX2 175 aaKnown RBP24.28■■□□□ 1.48
CPSF4-204ENST00000436336 CTTNBP2NLQ9P2B4 639 aa24.28■■□□□ 1.48
CPSF4-204ENST00000436336 UVRAGQ9P2Y5 699 aa24.28■■□□□ 1.48
CPSF4-204ENST00000436336 LZTS1Q9Y250 596 aa24.28■■□□□ 1.48
CPSF4-204ENST00000436336 PCDHB5Q9Y5E4 795 aa24.28■■□□□ 1.48
CPSF4-204ENST00000436336 HSFX4A0A1B0GTS1 333 aaPredicted RBP24.27■■□□□ 1.48
CPSF4-204ENST00000436336 HSFX3A0A1B0GWH4 333 aaPredicted RBP24.27■■□□□ 1.48
CPSF4-204ENST00000436336 ERBB2P04626 1255 aa24.27■■□□□ 1.48
CPSF4-204ENST00000436336 BMP8BP34820 402 aa24.27■■□□□ 1.48
CPSF4-204ENST00000436336 ACADSBP45954 432 aa24.27■■□□□ 1.48
CPSF4-204ENST00000436336 NOP2P46087 812 aaKnown RBP24.27■■□□□ 1.48
CPSF4-204ENST00000436336 RGS7P49802 495 aa24.27■■□□□ 1.48
CPSF4-204ENST00000436336 CDR1P51861 262 aa24.27■■□□□ 1.48
CPSF4-204ENST00000436336 NAP1L1P55209 391 aaKnown RBP24.27■■□□□ 1.48
CPSF4-204ENST00000436336 ARPP19P56211 112 aa24.27■■□□□ 1.48
CPSF4-204ENST00000436336 MAP3K7CLP57077 242 aa24.27■■□□□ 1.48
CPSF4-204ENST00000436336 PLEKHA7Q6IQ23 1121 aa24.27■■□□□ 1.48
CPSF4-204ENST00000436336 PIGZQ86VD9 579 aa24.27■■□□□ 1.48
CPSF4-204ENST00000436336 C2orf15Q8WU43 125 aaKnown RBP24.27■■□□□ 1.48
CPSF4-204ENST00000436336 KCTD13Q8WZ19 329 aa24.27■■□□□ 1.48
CPSF4-204ENST00000436336 C16orf45Q96MC5 204 aaPredicted RBP24.27■■□□□ 1.48
CPSF4-204ENST00000436336 SAMD11Q96NU1 681 aa24.27■■□□□ 1.48
CPSF4-204ENST00000436336 C17orf80Q9BSJ5 609 aa24.27■■□□□ 1.48
CPSF4-204ENST00000436336 IRX2Q9BZI1 471 aaPredicted RBP24.27■■□□□ 1.48
CPSF4-204ENST00000436336 MRPL47Q9HD33 250 aaKnown RBP24.27■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms