RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 ABI2Q9NYB9 513 aaPredicted RBP13.21□□□□□ -0.29
USP40-205ENST00000430158 THEGQ9P2T0 379 aa13.21□□□□□ -0.29
USP40-205ENST00000430158 DNAJC12Q9UKB3 198 aa13.21□□□□□ -0.29
USP40-205ENST00000430158 USP15Q9Y4E8 981 aaPredicted RBP13.21□□□□□ -0.29
USP40-205ENST00000430158 FHOD1Q9Y613 1164 aa13.21□□□□□ -0.29
USP40-205ENST00000430158 FOXN3O00409 490 aaPredicted RBP13.2□□□□□ -0.3
USP40-205ENST00000430158 PRRG1O14668 218 aa13.2□□□□□ -0.3
USP40-205ENST00000430158 CCL16O15467 120 aa13.2□□□□□ -0.3
USP40-205ENST00000430158 AP5Z1O43299 807 aa13.2□□□□□ -0.3
USP40-205ENST00000430158 SLC34A2O95436 690 aa13.2□□□□□ -0.3
USP40-205ENST00000430158 CALCAP01258 141 aa13.2□□□□□ -0.3
USP40-205ENST00000430158 PAEPP09466 180 aa13.2□□□□□ -0.3
USP40-205ENST00000430158 CCDC130P13994 396 aa13.2□□□□□ -0.3
USP40-205ENST00000430158 HMGA1P17096 107 aaKnown RBP13.2□□□□□ -0.3
USP40-205ENST00000430158 BDNFP23560 247 aa13.2□□□□□ -0.3
USP40-205ENST00000430158 ELF1P32519 619 aa13.2□□□□□ -0.3
USP40-205ENST00000430158 TUFMP49411 452 aaKnown RBP13.2□□□□□ -0.3
USP40-205ENST00000430158 EPHA5P54756 1037 aa13.2□□□□□ -0.3
USP40-205ENST00000430158 MFAP3P55082 362 aa13.2□□□□□ -0.3
USP40-205ENST00000430158 UBXN1Q04323 297 aa13.2□□□□□ -0.3
USP40-205ENST00000430158 TWF1Q12792 350 aa13.2□□□□□ -0.3
USP40-205ENST00000430158 PTPN21Q16825 1174 aa13.2□□□□□ -0.3
USP40-205ENST00000430158 PKDCCQ504Y2 493 aa13.2□□□□□ -0.3
USP40-205ENST00000430158 ZNF394Q53GI3 561 aa13.2□□□□□ -0.3
USP40-205ENST00000430158 FKBP15Q5T1M5 1219 aa13.2□□□□□ -0.3
USP40-205ENST00000430158 PPP1R26Q5T8A7 1209 aaPredicted RBP13.2□□□□□ -0.3
USP40-205ENST00000430158 ARHGAP17Q68EM7 881 aa13.2□□□□□ -0.3
USP40-205ENST00000430158 TMEM270Q6UE05 265 aa13.2□□□□□ -0.3
USP40-205ENST00000430158 VSTM1Q6UX27 236 aa13.2□□□□□ -0.3
USP40-205ENST00000430158 C4orf50Q6ZRC1 276 aa13.2□□□□□ -0.3
USP40-205ENST00000430158 EP400NLQ6ZTU2 488 aa13.2□□□□□ -0.3
USP40-205ENST00000430158 FAM35AQ86V20 835 aa13.2□□□□□ -0.3
USP40-205ENST00000430158 FAM71AQ8IYT1 594 aa13.2□□□□□ -0.3
USP40-205ENST00000430158 RNF214Q8ND24 703 aa13.2□□□□□ -0.3
USP40-205ENST00000430158 FAM81BQ96LP2 452 aa13.2□□□□□ -0.3
USP40-205ENST00000430158 SMOQ99835 787 aa13.2□□□□□ -0.3
USP40-205ENST00000430158 CSNK1G1Q9HCP0 422 aa13.2□□□□□ -0.3
USP40-205ENST00000430158 AVENQ9NQS1 362 aaPredicted RBP13.2□□□□□ -0.3
USP40-205ENST00000430158 HCFC1R1Q9NWW0 138 aa13.2□□□□□ -0.3
USP40-205ENST00000430158 DNMT3BQ9UBC3 853 aaKnown RBP13.2□□□□□ -0.3
USP40-205ENST00000430158 CUL9Q8IWT3 2517 aa13.2□□□□□ -0.3
USP40-205ENST00000430158 OBSL1O75147 1896 aa13.2□□□□□ -0.3
USP40-205ENST00000430158 A0A1W2PQC6 194 aa13.19□□□□□ -0.3
USP40-205ENST00000430158 HHLA1C9JL84 531 aa13.19□□□□□ -0.3
USP40-205ENST00000430158 TNFRSF10BO14763 440 aa13.19□□□□□ -0.3
USP40-205ENST00000430158 MOSPD3O75425 235 aa13.19□□□□□ -0.3
USP40-205ENST00000430158 BEST1O76090 585 aa13.19□□□□□ -0.3
USP40-205ENST00000430158 CLSTN1O94985 981 aa13.19□□□□□ -0.3
USP40-205ENST00000430158 BMP1P13497 986 aa13.19□□□□□ -0.3
USP40-205ENST00000430158 CLCN1P35523 988 aa13.19□□□□□ -0.3
USP40-205ENST00000430158 KCNQ1P51787 676 aa13.19□□□□□ -0.3
USP40-205ENST00000430158 JAM2P57087 298 aa13.19□□□□□ -0.3
USP40-205ENST00000430158 YWHAEP62258 255 aaKnown RBP13.19□□□□□ -0.3
USP40-205ENST00000430158 SMAD2Q15796 467 aaKnown RBP13.19□□□□□ -0.3
USP40-205ENST00000430158 DDR2Q16832 855 aa13.19□□□□□ -0.3
USP40-205ENST00000430158 SDHAF4Q5VUM1 108 aa13.19□□□□□ -0.3
USP40-205ENST00000430158 TMC8Q8IU68 726 aa13.19□□□□□ -0.3
USP40-205ENST00000430158 SPATA2LQ8IUW3 424 aaPredicted RBP13.19□□□□□ -0.3
USP40-205ENST00000430158 RBBP8NLQ8NC74 664 aaPredicted RBP13.19□□□□□ -0.3
USP40-205ENST00000430158 SLC2A14Q8TDB8 520 aa13.19□□□□□ -0.3
USP40-205ENST00000430158 ATXN2LQ8WWM7 1075 aaKnown RBP13.19□□□□□ -0.3
USP40-205ENST00000430158 SMG7Q92540 1137 aaKnown RBP13.19□□□□□ -0.3
USP40-205ENST00000430158 CYFIP2Q96F07 1278 aa13.19□□□□□ -0.3
USP40-205ENST00000430158 SPATA17Q96L03 361 aa13.19□□□□□ -0.3
USP40-205ENST00000430158 C8orf48Q96LL4 319 aa13.19□□□□□ -0.3
USP40-205ENST00000430158 HEXIM2Q96MH2 286 aaKnown RBP13.19□□□□□ -0.3
USP40-205ENST00000430158 STK33Q9BYT3 514 aa13.19□□□□□ -0.3
USP40-205ENST00000430158 IL21Q9HBE4 155 aa13.19□□□□□ -0.3
USP40-205ENST00000430158 WDR6Q9NNW5 1121 aaKnown RBP13.19□□□□□ -0.3
USP40-205ENST00000430158 ACP6Q9NPH0 428 aa13.19□□□□□ -0.3
USP40-205ENST00000430158 FAM49BQ9NUQ9 324 aa13.19□□□□□ -0.3
USP40-205ENST00000430158 IL37Q9NZH6 218 aa13.19□□□□□ -0.3
USP40-205ENST00000430158 KIAA1257Q9ULG3 409 aa13.19□□□□□ -0.3
USP40-205ENST00000430158 PCDHB4Q9Y5E5 795 aa13.19□□□□□ -0.3
USP40-205ENST00000430158 GOLGA6L19H0YKK7 550 aa13.18□□□□□ -0.3
USP40-205ENST00000430158 O00370 1275 aa13.18□□□□□ -0.3
USP40-205ENST00000430158 PES1O00541 588 aaKnown RBP13.18□□□□□ -0.3
USP40-205ENST00000430158 TPM2P07951 284 aa13.18□□□□□ -0.3
USP40-205ENST00000430158 PNMA6AP0CW24 399 aaPredicted RBP13.18□□□□□ -0.3
USP40-205ENST00000430158 VDRP11473 427 aa13.18□□□□□ -0.3
USP40-205ENST00000430158 RFX1P22670 979 aa13.18□□□□□ -0.3
USP40-205ENST00000430158 CCR2P41597 374 aa13.18□□□□□ -0.3
USP40-205ENST00000430158 NTHL1P78549 312 aa13.18□□□□□ -0.3
USP40-205ENST00000430158 CYP27A1Q02318 531 aa13.18□□□□□ -0.3
USP40-205ENST00000430158 DRAP1Q14919 205 aaPredicted RBP13.18□□□□□ -0.3
USP40-205ENST00000430158 ARHGAP44Q17R89 818 aa13.18□□□□□ -0.3
USP40-205ENST00000430158 MGAT5BQ3V5L5 792 aa13.18□□□□□ -0.3
USP40-205ENST00000430158 PRSS36Q5K4E3 855 aa13.18□□□□□ -0.3
USP40-205ENST00000430158 ATAT1Q5SQI0 421 aa13.18□□□□□ -0.3
USP40-205ENST00000430158 PTCRAQ6ISU1 281 aaPredicted RBP13.18□□□□□ -0.3
USP40-205ENST00000430158 ELMSAN1Q6PJG2 1045 aa13.18□□□□□ -0.3
USP40-205ENST00000430158 DNAJB7Q7Z6W7 309 aaPredicted RBP13.18□□□□□ -0.3
USP40-205ENST00000430158 TMEM150AQ86TG1 271 aa13.18□□□□□ -0.3
USP40-205ENST00000430158 HS6ST3Q8IZP7 471 aa13.18□□□□□ -0.3
USP40-205ENST00000430158 GPR152Q8TDT2 470 aa13.18□□□□□ -0.3
USP40-205ENST00000430158 PSMG2Q969U7 264 aa13.18□□□□□ -0.3
USP40-205ENST00000430158 MYRFLQ96LU7 910 aa13.18□□□□□ -0.3
USP40-205ENST00000430158 CEP295NLQ96MC4 621 aa13.18□□□□□ -0.3
USP40-205ENST00000430158 KCNK16Q96T55 309 aa13.18□□□□□ -0.3
USP40-205ENST00000430158 SEPT5Q99719 369 aaPredicted RBP13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms