RNA–Protein interactions for RNA: ENST00000427724.6

TCOF1-204, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5

Gene TCOF1, Length 4,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-204ENST00000427724 CSF2RAP15509 400 aa11.14□□□□□ -0.63
TCOF1-204ENST00000427724 PRLRP16471 622 aa11.14□□□□□ -0.63
TCOF1-204ENST00000427724 LAG3P18627 525 aa11.14□□□□□ -0.63
TCOF1-204ENST00000427724 SOX5P35711 763 aa11.14□□□□□ -0.63
TCOF1-204ENST00000427724 SLC11A2P49281 568 aa11.14□□□□□ -0.63
TCOF1-204ENST00000427724 PMS2P54278 862 aa11.14□□□□□ -0.63
TCOF1-204ENST00000427724 MAP3K7CLP57077 242 aa11.14□□□□□ -0.63
TCOF1-204ENST00000427724 STARD3Q14849 445 aa11.14□□□□□ -0.63
TCOF1-204ENST00000427724 NUGGCQ68CJ6 796 aa11.14□□□□□ -0.63
TCOF1-204ENST00000427724 KCTD17Q8N5Z5 321 aa11.14□□□□□ -0.63
TCOF1-204ENST00000427724 SLC30A5Q8TAD4 765 aa11.14□□□□□ -0.63
TCOF1-204ENST00000427724 SLC35G2Q8TBE7 412 aa11.14□□□□□ -0.63
TCOF1-204ENST00000427724 MYCBPAPQ8TBZ2 947 aa11.14□□□□□ -0.63
TCOF1-204ENST00000427724 ASAP3Q8TDY4 903 aa11.14□□□□□ -0.63
TCOF1-204ENST00000427724 MMTAG2Q9BU76 263 aaKnown RBP11.14□□□□□ -0.63
TCOF1-204ENST00000427724 PFDN4Q9NQP4 134 aa11.14□□□□□ -0.63
TCOF1-204ENST00000427724 ZNF112Q9UJU3 913 aa11.14□□□□□ -0.63
TCOF1-204ENST00000427724 LRRC37A3O60309 1634 aa11.14□□□□□ -0.63
TCOF1-204ENST00000427724 GLI3P10071 1580 aa11.14□□□□□ -0.63
TCOF1-204ENST00000427724 PIK3CDO00329 1044 aa11.14□□□□□ -0.63
TCOF1-204ENST00000427724 ADCY6O43306 1168 aa11.14□□□□□ -0.63
TCOF1-204ENST00000427724 ITGBL1O95965 494 aaPredicted RBP11.14□□□□□ -0.63
TCOF1-204ENST00000427724 GPC5P78333 572 aa11.14□□□□□ -0.63
TCOF1-204ENST00000427724 ITGB3BPQ13352 177 aaPredicted RBP11.14□□□□□ -0.63
TCOF1-204ENST00000427724 LRRC14Q15048 493 aa11.14□□□□□ -0.63
TCOF1-204ENST00000427724 PSMD5Q16401 504 aa11.14□□□□□ -0.63
TCOF1-204ENST00000427724 MIIPQ5JXC2 388 aa11.14□□□□□ -0.63
TCOF1-204ENST00000427724 GRK7Q8WTQ7 553 aa11.14□□□□□ -0.63
TCOF1-204ENST00000427724 RUBCNQ92622 972 aa11.14□□□□□ -0.63
TCOF1-204ENST00000427724 BADQ92934 168 aa11.14□□□□□ -0.63
TCOF1-204ENST00000427724 RNF25Q96BH1 459 aaPredicted RBP11.14□□□□□ -0.63
TCOF1-204ENST00000427724 DDIT4Q9NX09 232 aa11.14□□□□□ -0.63
TCOF1-204ENST00000427724 CNTNAP2Q9UHC6 1331 aa11.14□□□□□ -0.63
TCOF1-204ENST00000427724 CNTNAP1P78357 1384 aa11.13□□□□□ -0.63
TCOF1-204ENST00000427724 TBC1D3BA6NDS4 549 aa11.13□□□□□ -0.63
TCOF1-204ENST00000427724 LACTBL1A8MY62 500 aa11.13□□□□□ -0.63
TCOF1-204ENST00000427724 CYP3A4P08684 503 aa11.13□□□□□ -0.63
TCOF1-204ENST00000427724 EN2P19622 333 aaPredicted RBP11.13□□□□□ -0.63
TCOF1-204ENST00000427724 RAB30Q15771 203 aa11.13□□□□□ -0.63
TCOF1-204ENST00000427724 EDRF1Q3B7T1 1238 aa11.13□□□□□ -0.63
TCOF1-204ENST00000427724 SWT1Q5T5J6 900 aaKnown RBP11.13□□□□□ -0.63
TCOF1-204ENST00000427724 ZNF467Q7Z7K2 595 aaPredicted RBP11.13□□□□□ -0.63
TCOF1-204ENST00000427724 SPDYE1Q8NFV5 336 aaPredicted RBP11.13□□□□□ -0.63
TCOF1-204ENST00000427724 TMEM8AQ9HCN3 771 aa11.13□□□□□ -0.63
TCOF1-204ENST00000427724 LMO7Q8WWI1 1683 aa11.13□□□□□ -0.63
TCOF1-204ENST00000427724 FAM107AO95990 144 aa11.13□□□□□ -0.63
TCOF1-204ENST00000427724 GTF2H1P32780 548 aa11.13□□□□□ -0.63
TCOF1-204ENST00000427724 HSD17B3P37058 310 aa11.13□□□□□ -0.63
TCOF1-204ENST00000427724 RWDD2BP57060 319 aa11.13□□□□□ -0.63
TCOF1-204ENST00000427724 TMEM63BQ5T3F8 832 aa11.13□□□□□ -0.63
TCOF1-204ENST00000427724 CPA5Q8WXQ8 436 aa11.13□□□□□ -0.63
TCOF1-204ENST00000427724 RAB3IPQ96QF0 476 aaPredicted RBP11.13□□□□□ -0.63
TCOF1-204ENST00000427724 SLC7A5P2Q9GIP4 190 aa11.13□□□□□ -0.63
TCOF1-204ENST00000427724 ASAH2Q9NR71 780 aa11.13□□□□□ -0.63
TCOF1-204ENST00000427724 KRT82Q9NSB4 513 aa11.13□□□□□ -0.63
TCOF1-204ENST00000427724 SMIM35A0A1B0GVV1 85 aa11.13□□□□□ -0.63
TCOF1-204ENST00000427724 A0A1W2PQ45 241 aaPredicted RBP11.13□□□□□ -0.63
TCOF1-204ENST00000427724 A0A1W2PQY0 241 aa11.13□□□□□ -0.63
TCOF1-204ENST00000427724 ACADMP11310 421 aa11.13□□□□□ -0.63
TCOF1-204ENST00000427724 MUTP22033 750 aa11.13□□□□□ -0.63
TCOF1-204ENST00000427724 RANBP1P43487 201 aa11.13□□□□□ -0.63
TCOF1-204ENST00000427724 TPI1P60174 286 aa11.13□□□□□ -0.63
TCOF1-204ENST00000427724 CRYMQ14894 314 aa11.13□□□□□ -0.63
TCOF1-204ENST00000427724 ZNF618Q5T7W0 954 aa11.13□□□□□ -0.63
TCOF1-204ENST00000427724 GPAT2Q6NUI2 795 aa11.13□□□□□ -0.63
TCOF1-204ENST00000427724 ZNF720Q7Z2F6 126 aa11.13□□□□□ -0.63
TCOF1-204ENST00000427724 AENQ8WTP8 325 aaKnown RBP11.13□□□□□ -0.63
TCOF1-204ENST00000427724 SEC16BQ96JE7 1060 aa11.13□□□□□ -0.63
TCOF1-204ENST00000427724 C11orf84Q9BUA3 381 aaPredicted RBP11.13□□□□□ -0.63
TCOF1-204ENST00000427724 FSD1LQ9BXM9 530 aa11.13□□□□□ -0.63
TCOF1-204ENST00000427724 NUDT5Q9UKK9 219 aa11.13□□□□□ -0.63
TCOF1-204ENST00000427724 GTF3C4Q9UKN8 822 aa11.13□□□□□ -0.63
TCOF1-204ENST00000427724 MYBL1P10243 752 aa11.12□□□□□ -0.63
TCOF1-204ENST00000427724 GLRA2P23416 452 aa11.12□□□□□ -0.63
TCOF1-204ENST00000427724 RAP1GAPP47736 663 aa11.12□□□□□ -0.63
TCOF1-204ENST00000427724 GRB14Q14449 540 aa11.12□□□□□ -0.63
TCOF1-204ENST00000427724 SLMAPQ14BN4 828 aa11.12□□□□□ -0.63
TCOF1-204ENST00000427724 C6orf118Q5T5N4 469 aa11.12□□□□□ -0.63
TCOF1-204ENST00000427724 DCLK2Q8N568 766 aa11.12□□□□□ -0.63
TCOF1-204ENST00000427724 C4orf32Q8N8J7 132 aa11.12□□□□□ -0.63
TCOF1-204ENST00000427724 BRD9Q9H8M2 597 aa11.12□□□□□ -0.63
TCOF1-204ENST00000427724 MORF4L1Q9UBU8 362 aa11.12□□□□□ -0.63
TCOF1-204ENST00000427724 SIK3Q9Y2K2 1263 aa11.12□□□□□ -0.63
TCOF1-204ENST00000427724 SLC27A5Q9Y2P5 690 aa11.12□□□□□ -0.63
TCOF1-204ENST00000427724 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.12□□□□□ -0.63
TCOF1-204ENST00000427724 ATRNL1Q5VV63 1379 aa11.12□□□□□ -0.63
TCOF1-204ENST00000427724 CARNS1A5YM72 827 aa11.12□□□□□ -0.63
TCOF1-204ENST00000427724 EIF3DO15371 548 aaKnown RBP eCLIP11.12□□□□□ -0.63
TCOF1-204ENST00000427724 B4GALT5O43286 388 aa11.12□□□□□ -0.63
TCOF1-204ENST00000427724 RNASEH1O60930 286 aaKnown RBP11.12□□□□□ -0.63
TCOF1-204ENST00000427724 PSMD10O75832 226 aa11.12□□□□□ -0.63
TCOF1-204ENST00000427724 STAMBPO95630 424 aa11.12□□□□□ -0.63
TCOF1-204ENST00000427724 GARTP22102 1010 aa11.12□□□□□ -0.63
TCOF1-204ENST00000427724 PBX3P40426 434 aa11.12□□□□□ -0.63
TCOF1-204ENST00000427724 AARSP49588 968 aaKnown RBP eCLIP11.12□□□□□ -0.632e-6■■■□□ 15.7
TCOF1-204ENST00000427724 CDH6P55285 790 aa11.12□□□□□ -0.63
TCOF1-204ENST00000427724 YWHAGP61981 247 aaKnown RBP eCLIP11.12□□□□□ -0.63
TCOF1-204ENST00000427724 TWF1Q12792 350 aa11.12□□□□□ -0.63
TCOF1-204ENST00000427724 NPY5RQ15761 445 aa11.12□□□□□ -0.63
TCOF1-204ENST00000427724 LRRC23Q53EV4 343 aaPredicted RBP11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms