RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 LMCD1Q9NZU5 365 aa10.68□□□□□ -0.7
CD44-207ENST00000425428 MTCL1Q9Y4B5 1905 aaKnown RBP10.68□□□□□ -0.7
CD44-207ENST00000425428 C2orf71A6NGG8 1288 aa10.67□□□□□ -0.7
CD44-207ENST00000425428 TEX28O15482 410 aa10.67□□□□□ -0.7
CD44-207ENST00000425428 RTN2O75298 545 aa10.67□□□□□ -0.7
CD44-207ENST00000425428 CALB1P05937 261 aa10.67□□□□□ -0.7
CD44-207ENST00000425428 CNPP09543 421 aaKnown RBP10.67□□□□□ -0.7
CD44-207ENST00000425428 OR4Q2P0C623 313 aa10.67□□□□□ -0.7
CD44-207ENST00000425428 ATF2P15336 505 aa10.67□□□□□ -0.7
CD44-207ENST00000425428 RPL17P18621 184 aaKnown RBP10.67□□□□□ -0.7
CD44-207ENST00000425428 MAGEA11P43364 429 aa10.67□□□□□ -0.7
CD44-207ENST00000425428 EPHB3P54753 998 aa10.67□□□□□ -0.7
CD44-207ENST00000425428 ERVFC1P60507 584 aa10.67□□□□□ -0.7
CD44-207ENST00000425428 ALKBH5Q6P6C2 394 aaKnown RBP10.67□□□□□ -0.7
CD44-207ENST00000425428 ZNF571Q7Z3V5 609 aaPredicted RBP10.67□□□□□ -0.7
CD44-207ENST00000425428 ITIH5Q86UX2 942 aa10.67□□□□□ -0.7
CD44-207ENST00000425428 PASD1Q8IV76 773 aa10.67□□□□□ -0.7
CD44-207ENST00000425428 SIX6OS1Q8N1H7 587 aa10.67□□□□□ -0.7
CD44-207ENST00000425428 UBA3Q8TBC4 463 aa10.67□□□□□ -0.7
CD44-207ENST00000425428 GDPD5Q8WTR4 605 aa10.67□□□□□ -0.7
CD44-207ENST00000425428 CTNNBL1Q8WYA6 563 aaPredicted RBP10.67□□□□□ -0.7
CD44-207ENST00000425428 KLHL5Q96PQ7 755 aa10.67□□□□□ -0.7
CD44-207ENST00000425428 CLSTN3Q9BQT9 956 aa10.67□□□□□ -0.7
CD44-207ENST00000425428 TRIM62Q9BVG3 475 aa10.67□□□□□ -0.7
CD44-207ENST00000425428 VN1R3Q9BXE9 311 aa10.67□□□□□ -0.7
CD44-207ENST00000425428 B3GNT5Q9BYG0 378 aa10.67□□□□□ -0.7
CD44-207ENST00000425428 PLEKHA4Q9H4M7 779 aa10.67□□□□□ -0.7
CD44-207ENST00000425428 CYLDQ9NQC7 956 aa10.67□□□□□ -0.7
CD44-207ENST00000425428 ARHGAP20Q9P2F6 1191 aa10.67□□□□□ -0.7
CD44-207ENST00000425428 NOCTQ9UK39 431 aaKnown RBP10.67□□□□□ -0.7
CD44-207ENST00000425428 EPN1Q9Y6I3 576 aaPredicted RBP10.67□□□□□ -0.7
CD44-207ENST00000425428 MTMR11A4FU01 709 aa10.67□□□□□ -0.7
CD44-207ENST00000425428 TMCO5BA8MYB1 307 aa10.67□□□□□ -0.7
CD44-207ENST00000425428 XPO1O14980 1071 aaKnown RBP10.67□□□□□ -0.7
CD44-207ENST00000425428 SART1O43290 800 aaKnown RBP10.67□□□□□ -0.7
CD44-207ENST00000425428 ZSCAN12O43309 604 aa10.67□□□□□ -0.7
CD44-207ENST00000425428 NCK2O43639 380 aa10.67□□□□□ -0.7
CD44-207ENST00000425428 TBC1D4O60343 1298 aa10.67□□□□□ -0.7
CD44-207ENST00000425428 RTN3O95197 1032 aaPredicted RBP10.67□□□□□ -0.7
CD44-207ENST00000425428 MYBL1P10243 752 aa10.67□□□□□ -0.7
CD44-207ENST00000425428 MAP3K7CLP57077 242 aa10.67□□□□□ -0.7
CD44-207ENST00000425428 CLEC16AQ2KHT3 1053 aa10.67□□□□□ -0.7
CD44-207ENST00000425428 ACAD10Q6JQN1 1059 aa10.67□□□□□ -0.7
CD44-207ENST00000425428 WDR59Q6PJI9 974 aa10.67□□□□□ -0.7
CD44-207ENST00000425428 RNF19BQ6ZMZ0 732 aa10.67□□□□□ -0.7
CD44-207ENST00000425428 FUKQ8N0W3 1084 aa10.67□□□□□ -0.7
CD44-207ENST00000425428 STK32AQ8WU08 396 aa10.67□□□□□ -0.7
CD44-207ENST00000425428 HDAC7Q8WUI4 952 aa10.67□□□□□ -0.7
CD44-207ENST00000425428 SLC20A1Q8WUM9 679 aa10.67□□□□□ -0.7
CD44-207ENST00000425428 TFAP2BQ92481 460 aa10.67□□□□□ -0.7
CD44-207ENST00000425428 SECISBP2LQ93073 1101 aaKnown RBP10.67□□□□□ -0.7
CD44-207ENST00000425428 VCPIP1Q96JH7 1222 aa10.67□□□□□ -0.7
CD44-207ENST00000425428 PPP1R13BQ96KQ4 1090 aa10.67□□□□□ -0.7
CD44-207ENST00000425428 HSFY1Q96LI6 401 aa10.67□□□□□ -0.7
CD44-207ENST00000425428 CHP1Q99653 195 aa10.67□□□□□ -0.7
CD44-207ENST00000425428 RTP3Q9BQQ7 232 aa10.67□□□□□ -0.7
CD44-207ENST00000425428 UBXN6Q9BZV1 441 aa10.67□□□□□ -0.7
CD44-207ENST00000425428 FBXO44Q9H4M3 255 aa10.67□□□□□ -0.7
CD44-207ENST00000425428 PNPLA8Q9NP80 782 aa10.67□□□□□ -0.7
CD44-207ENST00000425428 ACP6Q9NPH0 428 aa10.67□□□□□ -0.7
CD44-207ENST00000425428 WDR35Q9P2L0 1181 aa10.67□□□□□ -0.7
CD44-207ENST00000425428 PTPRDP23468 1912 aa10.66□□□□□ -0.7
CD44-207ENST00000425428 WDR27A2RRH5 827 aa10.66□□□□□ -0.7
CD44-207ENST00000425428 EIF3CLB5ME19 914 aaKnown RBP10.66□□□□□ -0.7
CD44-207ENST00000425428 CLDN5O00501 218 aa10.66□□□□□ -0.7
CD44-207ENST00000425428 FSCN2O14926 492 aa10.66□□□□□ -0.7
CD44-207ENST00000425428 HCRTO43612 131 aa10.66□□□□□ -0.7
CD44-207ENST00000425428 XYLBO75191 536 aa10.66□□□□□ -0.7
CD44-207ENST00000425428 ABLIM3O94929 683 aa10.66□□□□□ -0.7
CD44-207ENST00000425428 FBXO21O94952 628 aa10.66□□□□□ -0.7
CD44-207ENST00000425428 NDUFA10O95299 355 aa10.66□□□□□ -0.7
CD44-207ENST00000425428 H2AFZP0C0S5 128 aa10.66□□□□□ -0.7
CD44-207ENST00000425428 CCDC175P0C221 793 aa10.66□□□□□ -0.7
CD44-207ENST00000425428 CYP2F1P24903 491 aa10.66□□□□□ -0.7
CD44-207ENST00000425428 MAGEA1P43355 309 aa10.66□□□□□ -0.7
CD44-207ENST00000425428 FMO1Q01740 532 aa10.66□□□□□ -0.7
CD44-207ENST00000425428 DUSP4Q13115 394 aa10.66□□□□□ -0.7
CD44-207ENST00000425428 HS1BP3Q53T59 392 aa10.66□□□□□ -0.7
CD44-207ENST00000425428 PPM1LQ5SGD2 360 aa10.66□□□□□ -0.7
CD44-207ENST00000425428 NAA35Q5VZE5 725 aa10.66□□□□□ -0.7
CD44-207ENST00000425428 HGSNATQ68CP4 663 aa10.66□□□□□ -0.7
CD44-207ENST00000425428 H2AFVQ71UI9 128 aa10.66□□□□□ -0.7
CD44-207ENST00000425428 ZDHHC17Q8IUH5 632 aa10.66□□□□□ -0.7
CD44-207ENST00000425428 ATAD1Q8NBU5 361 aa10.66□□□□□ -0.7
CD44-207ENST00000425428 KREMEN2Q8NCW0 462 aa10.66□□□□□ -0.7
CD44-207ENST00000425428 C18orf8Q96DM3 657 aa10.66□□□□□ -0.7
CD44-207ENST00000425428 C8orf48Q96LL4 319 aa10.66□□□□□ -0.7
CD44-207ENST00000425428 TMEM209Q96SK2 561 aa10.66□□□□□ -0.7
CD44-207ENST00000425428 EIF3CQ99613 913 aaKnown RBP10.66□□□□□ -0.7
CD44-207ENST00000425428 TSGA10Q9BZW7 698 aa10.66□□□□□ -0.7
CD44-207ENST00000425428 NSUN3Q9H649 340 aaKnown RBP10.66□□□□□ -0.7
CD44-207ENST00000425428 MRPL47Q9HD33 250 aaKnown RBP10.66□□□□□ -0.7
CD44-207ENST00000425428 COMMD8Q9NX08 183 aa10.66□□□□□ -0.7
CD44-207ENST00000425428 ADAM22Q9P0K1 906 aa10.66□□□□□ -0.7
CD44-207ENST00000425428 UXTQ9UBK9 157 aaPredicted RBP10.66□□□□□ -0.7
CD44-207ENST00000425428 ASB3Q9Y575 518 aa10.66□□□□□ -0.7
CD44-207ENST00000425428 TNRC18O15417 2968 aaPredicted RBP10.66□□□□□ -0.7
CD44-207ENST00000425428 SOWAHDA6NJG2 315 aa10.65□□□□□ -0.7
CD44-207ENST00000425428 TGM5O43548 720 aa10.65□□□□□ -0.7
CD44-207ENST00000425428 LILRB3O75022 631 aa10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms