RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 TRMT10CQ7L0Y3 403 aaKnown RBP11.69□□□□□ -0.54
PTPRF-204ENST00000412568 HDAC11Q96DB2 347 aa11.69□□□□□ -0.54
PTPRF-204ENST00000412568 ZNF512Q96ME7 567 aaPredicted RBP11.69□□□□□ -0.54
PTPRF-204ENST00000412568 ZC3H7BQ9UGR2 993 aaKnown RBP11.69□□□□□ -0.54
PTPRF-204ENST00000412568 USP18Q9UMW8 372 aa11.69□□□□□ -0.54
PTPRF-204ENST00000412568 WDR3Q9UNX4 943 aaKnown RBP eCLIP11.69□□□□□ -0.54
PTPRF-204ENST00000412568 UMODL1Q5DID0 1318 aa11.69□□□□□ -0.54
PTPRF-204ENST00000412568 NUP98P52948 1817 aa11.69□□□□□ -0.54
PTPRF-204ENST00000412568 PRRC2BQ5JSZ5 2229 aaKnown RBP11.68□□□□□ -0.54
PTPRF-204ENST00000412568 EIF4E1BA6NMX2 242 aaKnown RBP11.68□□□□□ -0.54
PTPRF-204ENST00000412568 PIAS1O75925 651 aa11.68□□□□□ -0.54
PTPRF-204ENST00000412568 ZSCAN5DPP0CG00 497 aa11.68□□□□□ -0.54
PTPRF-204ENST00000412568 EIF4BP23588 611 aaKnown RBP11.68□□□□□ -0.54
PTPRF-204ENST00000412568 CTCFP49711 727 aaPredicted RBP11.68□□□□□ -0.54
PTPRF-204ENST00000412568 PSEN2P49810 448 aa11.68□□□□□ -0.54
PTPRF-204ENST00000412568 AGBL2Q5U5Z8 902 aa11.68□□□□□ -0.54
PTPRF-204ENST00000412568 SLC27A1Q6PCB7 646 aa11.68□□□□□ -0.54
PTPRF-204ENST00000412568 CDKL3Q8IVW4 592 aaPredicted RBP11.68□□□□□ -0.54
PTPRF-204ENST00000412568 SHC3Q92529 594 aa11.68□□□□□ -0.54
PTPRF-204ENST00000412568 TTC25Q96NG3 672 aa11.68□□□□□ -0.54
PTPRF-204ENST00000412568 GPR20Q99678 358 aa11.68□□□□□ -0.54
PTPRF-204ENST00000412568 ACO2Q99798 780 aaKnown RBP11.68□□□□□ -0.54
PTPRF-204ENST00000412568 RSAD1Q9HA92 442 aa11.68□□□□□ -0.54
PTPRF-204ENST00000412568 XPNPEP3Q9NQH7 507 aa11.68□□□□□ -0.54
PTPRF-204ENST00000412568 E5RJQ4 531 aa11.68□□□□□ -0.54
PTPRF-204ENST00000412568 EEF2KO00418 725 aaKnown RBP11.68□□□□□ -0.54
PTPRF-204ENST00000412568 CDH16O75309 829 aa11.68□□□□□ -0.54
PTPRF-204ENST00000412568 KRT38O76015 456 aa11.68□□□□□ -0.54
PTPRF-204ENST00000412568 NCF2P19878 526 aaPredicted RBP11.68□□□□□ -0.54
PTPRF-204ENST00000412568 NCKAP1LP55160 1127 aa11.68□□□□□ -0.54
PTPRF-204ENST00000412568 SLC12A1Q13621 1099 aa11.68□□□□□ -0.54
PTPRF-204ENST00000412568 TAF11Q15544 211 aa11.68□□□□□ -0.54
PTPRF-204ENST00000412568 NFIL3Q16649 462 aa11.68□□□□□ -0.54
PTPRF-204ENST00000412568 ZNF662Q6ZS27 426 aa11.68□□□□□ -0.54
PTPRF-204ENST00000412568 DEFB128Q7Z7B8 93 aa11.68□□□□□ -0.54
PTPRF-204ENST00000412568 SLC9A9Q8IVB4 645 aa11.68□□□□□ -0.54
PTPRF-204ENST00000412568 FAM71AQ8IYT1 594 aa11.68□□□□□ -0.54
PTPRF-204ENST00000412568 NETO2Q8NC67 525 aa11.68□□□□□ -0.54
PTPRF-204ENST00000412568 SLC2A14Q8TDB8 520 aa11.68□□□□□ -0.54
PTPRF-204ENST00000412568 RAPGEF5Q92565 580 aa11.68□□□□□ -0.54
PTPRF-204ENST00000412568 PCDHB18PQ96TA0 734 aa11.68□□□□□ -0.54
PTPRF-204ENST00000412568 EPAS1Q99814 870 aa11.68□□□□□ -0.54
PTPRF-204ENST00000412568 TRABDQ9H4I3 376 aa11.68□□□□□ -0.54
PTPRF-204ENST00000412568 TXNRD2Q9NNW7 524 aa11.68□□□□□ -0.54
PTPRF-204ENST00000412568 SLC38A7Q9NVC3 462 aa11.68□□□□□ -0.54
PTPRF-204ENST00000412568 GPC4O75487 556 aa11.68□□□□□ -0.54
PTPRF-204ENST00000412568 CCDC130P13994 396 aa11.68□□□□□ -0.54
PTPRF-204ENST00000412568 ARF4P18085 180 aaPredicted RBP11.68□□□□□ -0.54
PTPRF-204ENST00000412568 PTENP60484 403 aa11.68□□□□□ -0.54
PTPRF-204ENST00000412568 C15orf59Q2T9L4 293 aaPredicted RBP11.68□□□□□ -0.54
PTPRF-204ENST00000412568 LPPQ93052 612 aa11.68□□□□□ -0.54
PTPRF-204ENST00000412568 GOLGA2P5Q9HBQ8 144 aa11.68□□□□□ -0.54
PTPRF-204ENST00000412568 NMRK2Q9NPI5 230 aa11.68□□□□□ -0.54
PTPRF-204ENST00000412568 HAUS2Q9NVX0 235 aa11.68□□□□□ -0.54
PTPRF-204ENST00000412568 MYH13Q9UKX3 1938 aa11.68□□□□□ -0.54
PTPRF-204ENST00000412568 TRAPPC3O43617 180 aa11.68□□□□□ -0.54
PTPRF-204ENST00000412568 APOEP02649 317 aa11.68□□□□□ -0.54
PTPRF-204ENST00000412568 MCF2P10911 925 aa11.68□□□□□ -0.54
PTPRF-204ENST00000412568 RFC1P35251 1148 aaPredicted RBP11.68□□□□□ -0.54
PTPRF-204ENST00000412568 HSPA9P38646 679 aaKnown RBP11.68□□□□□ -0.54
PTPRF-204ENST00000412568 TFDP3Q5H9I0 405 aa11.68□□□□□ -0.54
PTPRF-204ENST00000412568 ALG3Q92685 438 aa11.68□□□□□ -0.54
PTPRF-204ENST00000412568 NUDCD1Q96RS6 583 aa11.68□□□□□ -0.54
PTPRF-204ENST00000412568 NCAPGQ9BPX3 1015 aa11.68□□□□□ -0.54
PTPRF-204ENST00000412568 TRPC7Q9HCX4 862 aa11.68□□□□□ -0.54
PTPRF-204ENST00000412568 ZFATQ9P243 1243 aa11.68□□□□□ -0.54
PTPRF-204ENST00000412568 RBPJLQ9UBG7 517 aa11.68□□□□□ -0.54
PTPRF-204ENST00000412568 MARCOQ9UEW3 520 aaPredicted RBP11.68□□□□□ -0.54
PTPRF-204ENST00000412568 AJAP1Q9UKB5 411 aaPredicted RBP11.68□□□□□ -0.54
PTPRF-204ENST00000412568 TAF1P21675 1872 aa11.67□□□□□ -0.54
PTPRF-204ENST00000412568 NFASCO94856 1347 aa11.67□□□□□ -0.54
PTPRF-204ENST00000412568 TMEM120BA0PK00 339 aa11.67□□□□□ -0.54
PTPRF-204ENST00000412568 MICAL2O94851 1124 aa11.67□□□□□ -0.54
PTPRF-204ENST00000412568 TYK2P29597 1187 aa11.67□□□□□ -0.54
PTPRF-204ENST00000412568 ASPHQ12797 758 aa11.67□□□□□ -0.54
PTPRF-204ENST00000412568 STAT4Q14765 748 aa11.67□□□□□ -0.54
PTPRF-204ENST00000412568 CCNYL1Q8N7R7 359 aa11.67□□□□□ -0.54
PTPRF-204ENST00000412568 SP110Q9HB58 689 aa11.67□□□□□ -0.54
PTPRF-204ENST00000412568 TMBIM4Q9HC24 238 aa11.67□□□□□ -0.54
PTPRF-204ENST00000412568 SARS2Q9NP81 518 aaKnown RBP11.67□□□□□ -0.54
PTPRF-204ENST00000412568 KRT82Q9NSB4 513 aa11.67□□□□□ -0.54
PTPRF-204ENST00000412568 DDX43Q9NXZ2 648 aaKnown RBP11.67□□□□□ -0.54
PTPRF-204ENST00000412568 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP11.67□□□□□ -0.54
PTPRF-204ENST00000412568 BARX2Q9UMQ3 279 aaPredicted RBP11.67□□□□□ -0.54
PTPRF-204ENST00000412568 MANSC4A6NHS7 340 aaPredicted RBP11.67□□□□□ -0.54
PTPRF-204ENST00000412568 NOL3O60936 208 aaKnown RBP11.67□□□□□ -0.54
PTPRF-204ENST00000412568 SYF2O95926 243 aaKnown RBP11.67□□□□□ -0.54
PTPRF-204ENST00000412568 FAM107AO95990 144 aa11.67□□□□□ -0.54
PTPRF-204ENST00000412568 AKR1A1P14550 325 aa11.67□□□□□ -0.54
PTPRF-204ENST00000412568 ETFBP38117 255 aa11.67□□□□□ -0.54
PTPRF-204ENST00000412568 TPD52P55327 224 aaPredicted RBP11.67□□□□□ -0.54
PTPRF-204ENST00000412568 POLE2P56282 527 aa11.67□□□□□ -0.54
PTPRF-204ENST00000412568 IQSEC1Q6DN90 963 aa11.67□□□□□ -0.54
PTPRF-204ENST00000412568 KDM7AQ6ZMT4 941 aa11.67□□□□□ -0.54
PTPRF-204ENST00000412568 SPOCD1Q6ZMY3 1216 aa11.67□□□□□ -0.54
PTPRF-204ENST00000412568 SEC16BQ96JE7 1060 aa11.67□□□□□ -0.54
PTPRF-204ENST00000412568 PPP1R36Q96LQ0 422 aa11.67□□□□□ -0.54
PTPRF-204ENST00000412568 UBP1Q9NZI7 540 aa11.67□□□□□ -0.54
PTPRF-204ENST00000412568 IRF1P10914 325 aa11.67□□□□□ -0.54
PTPRF-204ENST00000412568 FNTAP49354 379 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 403.6 ms