RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 PRSS55Q6UWB4 352 aaPredicted RBP14.23□□□□□ -0.13
LIMS1-204ENST00000409441 ANKS3Q6ZW76 656 aa14.23□□□□□ -0.13
LIMS1-204ENST00000409441 TTC39CQ8N584 583 aa14.23□□□□□ -0.13
LIMS1-204ENST00000409441 SLC30A5Q8TAD4 765 aa14.23□□□□□ -0.13
LIMS1-204ENST00000409441 SPATA18Q8TC71 538 aa14.23□□□□□ -0.13
LIMS1-204ENST00000409441 AUTS2Q8WXX7 1259 aa14.23□□□□□ -0.13
LIMS1-204ENST00000409441 TCF25Q9BQ70 676 aa14.23□□□□□ -0.13
LIMS1-204ENST00000409441 PACSIN1Q9BY11 444 aa14.23□□□□□ -0.13
LIMS1-204ENST00000409441 UBXN6Q9BZV1 441 aa14.23□□□□□ -0.13
LIMS1-204ENST00000409441 ZBP1Q9H171 429 aa14.23□□□□□ -0.13
LIMS1-204ENST00000409441 TLR9Q9NR96 1032 aa14.23□□□□□ -0.13
LIMS1-204ENST00000409441 DDX43Q9NXZ2 648 aaKnown RBP14.23□□□□□ -0.13
LIMS1-204ENST00000409441 BARX2Q9UMQ3 279 aaPredicted RBP14.23□□□□□ -0.13
LIMS1-204ENST00000409441 STXBP5LQ9Y2K9 1186 aa14.23□□□□□ -0.13
LIMS1-204ENST00000409441 CHD9Q3L8U1 2897 aa14.23□□□□□ -0.13
LIMS1-204ENST00000409441 LAMA3Q16787 3333 aa14.23□□□□□ -0.13
LIMS1-204ENST00000409441 A8MXQ7 604 aa14.23□□□□□ -0.13
LIMS1-204ENST00000409441 H7C4K7 107 aa14.23□□□□□ -0.13
LIMS1-204ENST00000409441 FOXN3O00409 490 aaPredicted RBP14.23□□□□□ -0.13
LIMS1-204ENST00000409441 LILRB3O75022 631 aa14.23□□□□□ -0.13
LIMS1-204ENST00000409441 SASH3O75995 380 aa14.23□□□□□ -0.13
LIMS1-204ENST00000409441 URODP06132 367 aa14.23□□□□□ -0.13
LIMS1-204ENST00000409441 YWHAEP62258 255 aaKnown RBP14.23□□□□□ -0.13
LIMS1-204ENST00000409441 INCA1Q0VD86 236 aa14.23□□□□□ -0.13
LIMS1-204ENST00000409441 CFAP221Q4G0U5 840 aa14.23□□□□□ -0.13
LIMS1-204ENST00000409441 CTXN3Q4LDR2 81 aa14.23□□□□□ -0.13
LIMS1-204ENST00000409441 GPR65Q8IYL9 337 aa14.23□□□□□ -0.13
LIMS1-204ENST00000409441 MRPL43Q8N983 215 aaKnown RBP14.23□□□□□ -0.13
LIMS1-204ENST00000409441 COG1Q8WTW3 980 aa14.23□□□□□ -0.13
LIMS1-204ENST00000409441 PIK3R5Q8WYR1 880 aa14.23□□□□□ -0.13
LIMS1-204ENST00000409441 LRCH3Q96II8 777 aa14.23□□□□□ -0.13
LIMS1-204ENST00000409441 RTP3Q9BQQ7 232 aa14.23□□□□□ -0.13
LIMS1-204ENST00000409441 SYT11Q9BT88 431 aa14.23□□□□□ -0.13
LIMS1-204ENST00000409441 GPR88Q9GZN0 384 aa14.23□□□□□ -0.13
LIMS1-204ENST00000409441 TTYH1Q9H313 450 aaPredicted RBP14.23□□□□□ -0.13
LIMS1-204ENST00000409441 FAM124BQ9H5Z6 455 aaPredicted RBP14.23□□□□□ -0.13
LIMS1-204ENST00000409441 ABCB6Q9NP58 842 aa14.23□□□□□ -0.13
LIMS1-204ENST00000409441 ENTPD7Q9NQZ7 604 aa14.23□□□□□ -0.13
LIMS1-204ENST00000409441 SSX2IPQ9Y2D8 614 aa14.23□□□□□ -0.13
LIMS1-204ENST00000409441 NME7Q9Y5B8 376 aa14.23□□□□□ -0.13
LIMS1-204ENST00000409441 PCDHB4Q9Y5E5 795 aa14.23□□□□□ -0.13
LIMS1-204ENST00000409441 KIAA1671Q9BY89 1806 aa14.22□□□□□ -0.13
LIMS1-204ENST00000409441 TMEM265A0A087WTH1 108 aa14.22□□□□□ -0.13
LIMS1-204ENST00000409441 DDX3XO00571 662 aaKnown RBP eCLIP14.22□□□□□ -0.13
LIMS1-204ENST00000409441 HCRTO43612 131 aa14.22□□□□□ -0.13
LIMS1-204ENST00000409441 TBC1D4O60343 1298 aa14.22□□□□□ -0.13
LIMS1-204ENST00000409441 CILPO75339 1184 aa14.22□□□□□ -0.13
LIMS1-204ENST00000409441 CSPG5O95196 566 aa14.22□□□□□ -0.13
LIMS1-204ENST00000409441 ACAT1P24752 427 aaKnown RBP14.22□□□□□ -0.13
LIMS1-204ENST00000409441 CA8P35219 290 aa14.22□□□□□ -0.13
LIMS1-204ENST00000409441 NDST1P52848 882 aa14.22□□□□□ -0.13
LIMS1-204ENST00000409441 PSMD5Q16401 504 aa14.22□□□□□ -0.13
LIMS1-204ENST00000409441 ZNF394Q53GI3 561 aa14.22□□□□□ -0.13
LIMS1-204ENST00000409441 TMEM270Q6UE05 265 aa14.22□□□□□ -0.13
LIMS1-204ENST00000409441 RSPO2Q6UXX9 243 aaPredicted RBP14.22□□□□□ -0.13
LIMS1-204ENST00000409441 UNC93AQ86WB7 457 aa14.22□□□□□ -0.13
LIMS1-204ENST00000409441 UBR7Q8N806 425 aa14.22□□□□□ -0.13
LIMS1-204ENST00000409441 SPATA4Q8NEY3 305 aa14.22□□□□□ -0.13
LIMS1-204ENST00000409441 WHAMMQ8TF30 809 aa14.22□□□□□ -0.13
LIMS1-204ENST00000409441 GDPD5Q8WTR4 605 aa14.22□□□□□ -0.13
LIMS1-204ENST00000409441 CALR3Q96L12 384 aaKnown RBP14.22□□□□□ -0.13
LIMS1-204ENST00000409441 ACBD6Q9BR61 282 aa14.22□□□□□ -0.13
LIMS1-204ENST00000409441 NGRNQ9NPE2 291 aaKnown RBP14.22□□□□□ -0.13
LIMS1-204ENST00000409441 BACE2Q9Y5Z0 518 aa14.22□□□□□ -0.13
LIMS1-204ENST00000409441 FSCN2O14926 492 aa14.21□□□□□ -0.13
LIMS1-204ENST00000409441 NCK2O43639 380 aa14.21□□□□□ -0.13
LIMS1-204ENST00000409441 LPXNO60711 386 aa14.21□□□□□ -0.13
LIMS1-204ENST00000409441 KRT5P13647 590 aa14.21□□□□□ -0.13
LIMS1-204ENST00000409441 RPL17P18621 184 aaKnown RBP14.21□□□□□ -0.13
LIMS1-204ENST00000409441 PCSK1P29120 753 aa14.21□□□□□ -0.13
LIMS1-204ENST00000409441 IRS1P35568 1242 aa14.21□□□□□ -0.13
LIMS1-204ENST00000409441 USP8P40818 1118 aa14.21□□□□□ -0.13
LIMS1-204ENST00000409441 C2orf54Q08AI8 447 aa14.21□□□□□ -0.13
LIMS1-204ENST00000409441 GPS2Q13227 327 aa14.21□□□□□ -0.13
LIMS1-204ENST00000409441 SMC1AQ14683 1233 aaKnown RBP14.21□□□□□ -0.13
LIMS1-204ENST00000409441 GLE1Q53GS7 698 aaKnown RBP14.21□□□□□ -0.13
LIMS1-204ENST00000409441 PDE12Q6L8Q7 609 aaKnown RBP14.21□□□□□ -0.13
LIMS1-204ENST00000409441 ZNF280DQ6N043 979 aa14.21□□□□□ -0.13
LIMS1-204ENST00000409441 SYCE1Q8N0S2 351 aa14.21□□□□□ -0.13
LIMS1-204ENST00000409441 OR10T2Q8NGX3 314 aa14.21□□□□□ -0.13
LIMS1-204ENST00000409441 SHC3Q92529 594 aa14.21□□□□□ -0.13
LIMS1-204ENST00000409441 TWNKQ96RR1 684 aa14.21□□□□□ -0.13
LIMS1-204ENST00000409441 CLSTN3Q9BQT9 956 aa14.21□□□□□ -0.13
LIMS1-204ENST00000409441 NT5C1AQ9BXI3 368 aa14.21□□□□□ -0.13
LIMS1-204ENST00000409441 OXCT2Q9BYC2 517 aaPredicted RBP14.21□□□□□ -0.13
LIMS1-204ENST00000409441 ELOVL4Q9GZR5 314 aa14.21□□□□□ -0.13
LIMS1-204ENST00000409441 LMAN2LQ9H0V9 348 aa14.21□□□□□ -0.13
LIMS1-204ENST00000409441 ACBD3Q9H3P7 528 aa14.21□□□□□ -0.13
LIMS1-204ENST00000409441 MTRRQ9UBK8 725 aa14.21□□□□□ -0.13
LIMS1-204ENST00000409441 HMGXB4Q9UGU5 601 aa14.21□□□□□ -0.13
LIMS1-204ENST00000409441 CNTN6Q9UQ52 1028 aa14.21□□□□□ -0.13
LIMS1-204ENST00000409441 IRAK3Q9Y616 596 aa14.21□□□□□ -0.13
LIMS1-204ENST00000409441 NCANO14594 1321 aa14.21□□□□□ -0.13
LIMS1-204ENST00000409441 C2orf71A6NGG8 1288 aa14.2□□□□□ -0.14
LIMS1-204ENST00000409441 OR6C75A6NL08 312 aa14.2□□□□□ -0.14
LIMS1-204ENST00000409441 HIDE1A8MVS5 230 aa14.2□□□□□ -0.14
LIMS1-204ENST00000409441 ATP2C2O75185 946 aa14.2□□□□□ -0.14
LIMS1-204ENST00000409441 TMEM253P0C7T8 217 aa14.2□□□□□ -0.14
LIMS1-204ENST00000409441 RAD23BP54727 409 aa14.2□□□□□ -0.14
LIMS1-204ENST00000409441 ARPP19P56211 112 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms