RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 LRRC52Q8N7C0 313 aa30.55■■■□□ 2.48
HMGB1-205ENST00000399494 GAB3Q8WWW8 586 aa30.55■■■□□ 2.48
HMGB1-205ENST00000399494 ABCB6Q9NP58 842 aa30.55■■■□□ 2.48
HMGB1-205ENST00000399494 EXOC1Q9NV70 894 aa30.55■■■□□ 2.48
HMGB1-205ENST00000399494 GDAP2Q9NXN4 497 aa30.55■■■□□ 2.48
HMGB1-205ENST00000399494 GTF3C4Q9UKN8 822 aa30.55■■■□□ 2.48
HMGB1-205ENST00000399494 RALGAPA1Q6GYQ0 2036 aa30.55■■■□□ 2.48
HMGB1-205ENST00000399494 AXIN1O15169 862 aa30.54■■■□□ 2.48
HMGB1-205ENST00000399494 TADA3O75528 432 aa30.54■■■□□ 2.48
HMGB1-205ENST00000399494 ACAT1P24752 427 aaKnown RBP30.54■■■□□ 2.48
HMGB1-205ENST00000399494 GALK1P51570 392 aa30.54■■■□□ 2.48
HMGB1-205ENST00000399494 INTS6LQ5JSJ4 861 aaKnown RBP30.54■■■□□ 2.48
HMGB1-205ENST00000399494 CC2D1AQ6P1N0 951 aaPredicted RBP30.54■■■□□ 2.48
HMGB1-205ENST00000399494 TRMT2BQ96GJ1 504 aaKnown RBP30.54■■■□□ 2.48
HMGB1-205ENST00000399494 FAM84AQ96KN4 292 aa30.54■■■□□ 2.48
HMGB1-205ENST00000399494 MYRFLQ96LU7 910 aa30.54■■■□□ 2.48
HMGB1-205ENST00000399494 RBAKQ9NYW8 714 aaPredicted RBP30.54■■■□□ 2.48
HMGB1-205ENST00000399494 UXTQ9UBK9 157 aaPredicted RBP30.54■■■□□ 2.48
HMGB1-205ENST00000399494 GOLGA8IPA6NC78 632 aa30.53■■■□□ 2.48
HMGB1-205ENST00000399494 GOLGA8JA6NMD2 632 aa30.53■■■□□ 2.48
HMGB1-205ENST00000399494 EIF3DO15371 548 aaKnown RBP eCLIP30.53■■■□□ 2.48
HMGB1-205ENST00000399494 NOL4O94818 638 aa30.53■■■□□ 2.48
HMGB1-205ENST00000399494 EGFP01133 1207 aa30.53■■■□□ 2.48
HMGB1-205ENST00000399494 AMPD2Q01433 879 aa30.53■■■□□ 2.48
HMGB1-205ENST00000399494 MYL7Q01449 175 aa30.53■■■□□ 2.48
HMGB1-205ENST00000399494 OSTM1Q86WC4 334 aa30.53■■■□□ 2.48
HMGB1-205ENST00000399494 GLIS3Q8NEA6 775 aa30.53■■■□□ 2.48
HMGB1-205ENST00000399494 CCDC47Q96A33 483 aaKnown RBP30.53■■■□□ 2.48
HMGB1-205ENST00000399494 LOXL4Q96JB6 756 aa30.53■■■□□ 2.48
HMGB1-205ENST00000399494 CYP2S1Q96SQ9 504 aa30.53■■■□□ 2.48
HMGB1-205ENST00000399494 ARRDC1-AS1Q9H2J1 176 aa30.53■■■□□ 2.48
HMGB1-205ENST00000399494 ITGA11Q9UKX5 1188 aa30.53■■■□□ 2.48
HMGB1-205ENST00000399494 SLC8A2Q9UPR5 921 aa30.53■■■□□ 2.48
HMGB1-205ENST00000399494 OBSL1O75147 1896 aa30.53■■■□□ 2.48
HMGB1-205ENST00000399494 GABRDO14764 452 aa30.52■■■□□ 2.48
HMGB1-205ENST00000399494 RPP40O75818 363 aaKnown RBP30.52■■■□□ 2.48
HMGB1-205ENST00000399494 RAP1GAPP47736 663 aa30.52■■■□□ 2.48
HMGB1-205ENST00000399494 PDGFRLQ15198 375 aa30.52■■■□□ 2.48
HMGB1-205ENST00000399494 CACNA2D4Q7Z3S7 1137 aa30.52■■■□□ 2.48
HMGB1-205ENST00000399494 CBWD1Q9BRT8 395 aa30.52■■■□□ 2.48
HMGB1-205ENST00000399494 PDE11AQ9HCR9 933 aa30.52■■■□□ 2.48
HMGB1-205ENST00000399494 SLC39A2Q9NP94 309 aa30.52■■■□□ 2.48
HMGB1-205ENST00000399494 POLR3BQ9NW08 1133 aaPredicted RBP30.52■■■□□ 2.48
HMGB1-205ENST00000399494 SIX4Q9UIU6 781 aa30.52■■■□□ 2.48
HMGB1-205ENST00000399494 RNF40O75150 1001 aa30.51■■■□□ 2.47
HMGB1-205ENST00000399494 DRD1P21728 446 aa30.51■■■□□ 2.47
HMGB1-205ENST00000399494 GJA4P35212 333 aa30.51■■■□□ 2.47
HMGB1-205ENST00000399494 RBP5P82980 135 aa30.51■■■□□ 2.47
HMGB1-205ENST00000399494 EHHADHQ08426 723 aa30.51■■■□□ 2.47
HMGB1-205ENST00000399494 CCDC142Q17RM4 750 aa30.51■■■□□ 2.47
HMGB1-205ENST00000399494 KBTBD6Q86V97 674 aa30.51■■■□□ 2.47
HMGB1-205ENST00000399494 CAMKK1Q8N5S9 505 aa30.51■■■□□ 2.47
HMGB1-205ENST00000399494 SPATA18Q8TC71 538 aa30.51■■■□□ 2.47
HMGB1-205ENST00000399494 SLC22A12Q96S37 553 aa30.51■■■□□ 2.47
HMGB1-205ENST00000399494 PCIF1Q9H4Z3 704 aa30.51■■■□□ 2.47
HMGB1-205ENST00000399494 SNX9Q9Y5X1 595 aa30.51■■■□□ 2.47
HMGB1-205ENST00000399494 ZNF638Q14966 1978 aaKnown RBP30.51■■■□□ 2.47
HMGB1-205ENST00000399494 UBE4BO95155 1302 aa30.5■■■□□ 2.47
HMGB1-205ENST00000399494 HCRTO43612 131 aa30.5■■■□□ 2.47
HMGB1-205ENST00000399494 ZNF806P0C7X5 589 aa30.5■■■□□ 2.47
HMGB1-205ENST00000399494 LHX1P48742 406 aa30.5■■■□□ 2.47
HMGB1-205ENST00000399494 FAM160A1Q05DH4 1040 aa30.5■■■□□ 2.47
HMGB1-205ENST00000399494 KMT5BQ4FZB7 885 aa30.5■■■□□ 2.47
HMGB1-205ENST00000399494 CFAP221Q4G0U5 840 aa30.5■■■□□ 2.47
HMGB1-205ENST00000399494 NAIF1Q69YI7 327 aaPredicted RBP30.5■■■□□ 2.47
HMGB1-205ENST00000399494 TOP6BLQ8N6T0 577 aa30.5■■■□□ 2.47
HMGB1-205ENST00000399494 P2RY13Q9BPV8 354 aa30.5■■■□□ 2.47
HMGB1-205ENST00000399494 ECT2Q9H8V3 914 aa30.5■■■□□ 2.47
HMGB1-205ENST00000399494 TPRP12270 2363 aaKnown RBP30.5■■■□□ 2.47
HMGB1-205ENST00000399494 EPG5Q9HCE0 2579 aa30.49■■■□□ 2.47
HMGB1-205ENST00000399494 KLRC4O43908 158 aa30.49■■■□□ 2.47
HMGB1-205ENST00000399494 KRT19P08727 400 aa30.49■■■□□ 2.47
HMGB1-205ENST00000399494 PRR29P0C7W0 189 aa30.49■■■□□ 2.47
HMGB1-205ENST00000399494 MTF1Q14872 753 aa30.49■■■□□ 2.47
HMGB1-205ENST00000399494 SF3A2Q15428 464 aaKnown RBP30.49■■■□□ 2.47
HMGB1-205ENST00000399494 SOWAHAQ2M3V2 549 aa30.49■■■□□ 2.47
HMGB1-205ENST00000399494 FAM171BQ6P995 826 aa30.49■■■□□ 2.47
HMGB1-205ENST00000399494 EPM2AIP1Q7L775 607 aaPredicted RBP30.49■■■□□ 2.47
HMGB1-205ENST00000399494 SPATA2LQ8IUW3 424 aaPredicted RBP30.49■■■□□ 2.47
HMGB1-205ENST00000399494 FMR1NBQ8N0W7 255 aaPredicted RBP30.49■■■□□ 2.47
HMGB1-205ENST00000399494 NOC3LQ8WTT2 800 aaKnown RBP30.49■■■□□ 2.47
HMGB1-205ENST00000399494 OSCP1Q8WVF1 389 aa30.49■■■□□ 2.47
HMGB1-205ENST00000399494 DUS2Q9NX74 493 aaKnown RBP30.49■■■□□ 2.47
HMGB1-205ENST00000399494 EPN2O95208 641 aa30.48■■■□□ 2.47
HMGB1-205ENST00000399494 RPN1P04843 607 aaKnown RBP30.48■■■□□ 2.47
HMGB1-205ENST00000399494 USP17L7P0C7H9 530 aa30.48■■■□□ 2.47
HMGB1-205ENST00000399494 PSMD2Q13200 908 aa30.48■■■□□ 2.47
HMGB1-205ENST00000399494 ZNF77Q15935 545 aa30.48■■■□□ 2.47
HMGB1-205ENST00000399494 CCDC6Q16204 474 aa30.48■■■□□ 2.47
HMGB1-205ENST00000399494 LIMS2Q7Z4I7 341 aa30.48■■■□□ 2.47
HMGB1-205ENST00000399494 ADGRF2Q8IZF7 708 aa30.48■■■□□ 2.47
HMGB1-205ENST00000399494 ZNF507Q8TCN5 953 aa30.48■■■□□ 2.47
HMGB1-205ENST00000399494 FUBP3Q96I24 572 aaKnown RBP eCLIP30.48■■■□□ 2.47
HMGB1-205ENST00000399494 ZC3H10Q96K80 434 aaKnown RBP30.48■■■□□ 2.47
HMGB1-205ENST00000399494 MTMR12Q9C0I1 747 aa30.48■■■□□ 2.47
HMGB1-205ENST00000399494 TRPC7Q9HCX4 862 aa30.48■■■□□ 2.47
HMGB1-205ENST00000399494 GCNT4Q9P109 453 aa30.48■■■□□ 2.47
HMGB1-205ENST00000399494 ATG2BQ96BY7 2078 aa30.48■■■□□ 2.47
HMGB1-205ENST00000399494 ACACBO00763 2458 aa30.47■■■□□ 2.47
HMGB1-205ENST00000399494 AKAP3O75969 853 aa30.47■■■□□ 2.47
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms