RNA–Protein interactions for RNA: ENST00000398738.2

PTCHD4-202, Transcript of patched domain containing 4, humanhuman

TSL 1 (best)

Gene PTCHD4, Length 3,232 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-202ENST00000398738 MUTP22033 750 aa10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 ECE1P42892 770 aa10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 GEMIN4P57678 1058 aaKnown RBP10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 GPX6P59796 221 aa10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 YWHAGP61981 247 aaKnown RBP eCLIP10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 AP1B1Q10567 949 aa10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 FNBP1LQ5T0N5 605 aa10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 TMEM270Q6UE05 265 aa10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 RIPOR1Q6ZS17 1223 aa10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 SYDE1Q6ZW31 735 aaPredicted RBP10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 RASSF3Q86WH2 238 aa10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 POU5F2Q8N7G0 328 aa10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 RBM15BQ8NDT2 890 aaKnown RBP10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 FBXO36Q8NEA4 188 aa10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 CRYGNQ8WXF5 182 aa10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 MKL1Q969V6 931 aa10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 FAM213AQ9BRX8 229 aa10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 ZWILCHQ9H900 591 aa10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 TUFT1Q9NNX1 390 aa10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 NDE1Q9NXR1 346 aa10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 EURLQ9NYK6 297 aa10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 SEL1LQ9UBV2 794 aa10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 PACSIN3Q9UKS6 424 aa10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 PPM1HQ9ULR3 514 aa10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 AGTPBP1Q9UPW5 1226 aa10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 SPATA31A5Q5VU36 1347 aa10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 SPATA31A7Q8IWB4 1347 aa10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 F8VP50 259 aa10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 GRIN3BO60391 1043 aa10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 MTA2O94776 668 aa10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 GLRA2P23416 452 aa10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 KLRC2P26717 231 aa10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 MMP16P51512 607 aa10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 OCRLQ01968 901 aa10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 CEP55Q53EZ4 464 aa10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 LPCAT4Q643R3 524 aa10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 RGS9BPQ6ZS82 235 aa10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 ILDR2Q71H61 639 aa10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 SLC26A7Q8TE54 656 aa10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 SLCO2A1Q92959 643 aa10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 C8orf37Q96NL8 207 aa10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 ACAP3Q96P50 834 aa10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 EBF3Q9H4W6 596 aa10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 SAR1AQ9NR31 198 aa10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 STX18Q9P2W9 335 aaKnown RBP10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 USP21Q9UK80 565 aa10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 TRPC5Q9UL62 973 aaPredicted RBP10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 PRR12Q9ULL5 1215 aa10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 TCRBV7S3A2A0A539 114 aa10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 SORBS2O94875 1100 aaKnown RBP10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 PROSCO94903 275 aa10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 ANPEPP15144 967 aa10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 CENPCQ03188 943 aa10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 C6orf163Q5TEZ5 329 aa10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 OLFML2BQ68BL8 750 aa10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 DCUN1D2Q6PH85 259 aa10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 ZCCHC23Q6ZST2 131 aa10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 TREML1Q86YW5 311 aa10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 RIBC1Q8N443 379 aaPredicted RBP10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 GSTCDQ8NEC7 633 aa10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 CCDC110Q8TBZ0 833 aa10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 DDX1Q92499 740 aaKnown RBP10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 GATA6Q92908 595 aa10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 PTCD3Q96EY7 689 aaKnown RBP10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 OXNAD1Q96HP4 312 aaPredicted RBP10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 ZC3H12CQ9C0D7 883 aaKnown RBP10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 ASCC2Q9H1I8 757 aaPredicted RBP10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 TMEM206Q9H813 350 aa10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 ETNK2Q9NVF9 386 aa10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 TNS1Q9HBL0 1735 aaKnown RBP10.34□□□□□ -0.75
PTCHD4-202ENST00000398738 ITGB4P16144 1822 aa10.34□□□□□ -0.75
PTCHD4-202ENST00000398738 RGPD3A6NKT7 1758 aaPredicted RBP10.34□□□□□ -0.75
PTCHD4-202ENST00000398738 RGPD4Q7Z3J3 1758 aa10.34□□□□□ -0.75
PTCHD4-202ENST00000398738 CYB561D2O14569 222 aa10.34□□□□□ -0.75
PTCHD4-202ENST00000398738 LIASO43766 372 aa10.34□□□□□ -0.75
PTCHD4-202ENST00000398738 RNASEH1O60930 286 aaKnown RBP10.34□□□□□ -0.75
PTCHD4-202ENST00000398738 PDE5AO76074 875 aa10.34□□□□□ -0.75
PTCHD4-202ENST00000398738 MAP3K6O95382 1288 aa10.34□□□□□ -0.75
PTCHD4-202ENST00000398738 GSTA2P09210 222 aa10.34□□□□□ -0.75
PTCHD4-202ENST00000398738 ATP2B4P23634 1241 aa10.34□□□□□ -0.75
PTCHD4-202ENST00000398738 HIRAP54198 1017 aaPredicted RBP10.34□□□□□ -0.75
PTCHD4-202ENST00000398738 TMPRSS15P98073 1019 aa10.34□□□□□ -0.75
PTCHD4-202ENST00000398738 CDK16Q00536 496 aa10.34□□□□□ -0.75
PTCHD4-202ENST00000398738 KLF1Q13351 362 aaPredicted RBP10.34□□□□□ -0.75
PTCHD4-202ENST00000398738 SLC5A9Q2M3M2 681 aa10.34□□□□□ -0.75
PTCHD4-202ENST00000398738 MOXD1Q6UVY6 613 aa10.34□□□□□ -0.75
PTCHD4-202ENST00000398738 PRPF39Q86UA1 669 aaKnown RBP10.34□□□□□ -0.75
PTCHD4-202ENST00000398738 SIAH1Q8IUQ4 282 aa10.34□□□□□ -0.75
PTCHD4-202ENST00000398738 DRAXINQ8NBI3 349 aaPredicted RBP10.34□□□□□ -0.75
PTCHD4-202ENST00000398738 SMC1BQ8NDV3 1235 aa10.34□□□□□ -0.75
PTCHD4-202ENST00000398738 MTBPQ96DY7 904 aa10.34□□□□□ -0.75
PTCHD4-202ENST00000398738 TEKT3Q9BXF9 490 aa10.34□□□□□ -0.75
PTCHD4-202ENST00000398738 C1orf112Q9NSG2 853 aa10.34□□□□□ -0.75
PTCHD4-202ENST00000398738 CCNL1Q9UK58 526 aaPredicted RBP10.34□□□□□ -0.75
PTCHD4-202ENST00000398738 PCDHB4Q9Y5E5 795 aa10.34□□□□□ -0.75
PTCHD4-202ENST00000398738 CREB3O43889 395 aa10.34□□□□□ -0.75
PTCHD4-202ENST00000398738 AVILO75366 819 aa10.34□□□□□ -0.75
PTCHD4-202ENST00000398738 POLR2MP0CAP2 368 aa10.34□□□□□ -0.75
PTCHD4-202ENST00000398738 ADSSP30520 456 aa10.34□□□□□ -0.75
PTCHD4-202ENST00000398738 GDF10P55107 478 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms