RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 RNF103O00237 685 aa7.46□□□□□ -1.21
UPF2-203ENST00000397053 PTPN3P26045 913 aa7.46□□□□□ -1.21
UPF2-203ENST00000397053 GEMIN4P57678 1058 aaKnown RBP7.46□□□□□ -1.21
UPF2-203ENST00000397053 RINLQ6ZS11 566 aa7.46□□□□□ -1.21
UPF2-203ENST00000397053 CEP68Q76N32 757 aa7.46□□□□□ -1.21
UPF2-203ENST00000397053 TRAPPC11Q7Z392 1133 aa7.46□□□□□ -1.21
UPF2-203ENST00000397053 HERC6Q8IVU3 1022 aa7.46□□□□□ -1.21
UPF2-203ENST00000397053 MXRA8Q9BRK3 442 aa7.46□□□□□ -1.21
UPF2-203ENST00000397053 VPS33BQ9H267 617 aa7.46□□□□□ -1.21
UPF2-203ENST00000397053 HMX1Q9NP08 348 aaPredicted RBP7.46□□□□□ -1.21
UPF2-203ENST00000397053 MIEF1Q9NQG6 463 aa7.46□□□□□ -1.21
UPF2-203ENST00000397053 KANSL3Q9P2N6 904 aa7.46□□□□□ -1.21
UPF2-203ENST00000397053 N6AMT1Q9Y5N5 214 aa7.46□□□□□ -1.21
UPF2-203ENST00000397053 PTPRKQ15262 1439 aa7.46□□□□□ -1.22
UPF2-203ENST00000397053 TTC26A0AVF1 554 aa7.46□□□□□ -1.22
UPF2-203ENST00000397053 KPNA3O00505 521 aaPredicted RBP7.46□□□□□ -1.22
UPF2-203ENST00000397053 CYB561D2O14569 222 aa7.46□□□□□ -1.22
UPF2-203ENST00000397053 AIM2O14862 343 aa7.46□□□□□ -1.22
UPF2-203ENST00000397053 KPNA6O60684 536 aa7.46□□□□□ -1.22
UPF2-203ENST00000397053 NDUFS2O75306 463 aa7.46□□□□□ -1.22
UPF2-203ENST00000397053 CDH16O75309 829 aa7.46□□□□□ -1.22
UPF2-203ENST00000397053 IGKV5-2P06315 115 aa7.46□□□□□ -1.22
UPF2-203ENST00000397053 PDHA1P08559 390 aa7.46□□□□□ -1.22
UPF2-203ENST00000397053 GRK2P25098 689 aa7.46□□□□□ -1.22
UPF2-203ENST00000397053 POU1F1P28069 291 aa7.46□□□□□ -1.22
UPF2-203ENST00000397053 MAPK1P28482 360 aa7.46□□□□□ -1.22
UPF2-203ENST00000397053 PPP2R1BP30154 601 aa7.46□□□□□ -1.22
UPF2-203ENST00000397053 NUMBP49757 651 aa7.46□□□□□ -1.22
UPF2-203ENST00000397053 PLIN5Q00G26 463 aa7.46□□□□□ -1.22
UPF2-203ENST00000397053 RALGDSQ12967 914 aa7.46□□□□□ -1.22
UPF2-203ENST00000397053 SLC15A2Q16348 729 aa7.46□□□□□ -1.22
UPF2-203ENST00000397053 EDRF1Q3B7T1 1238 aa7.46□□□□□ -1.22
UPF2-203ENST00000397053 MAP1SQ66K74 1059 aaPredicted RBP7.46□□□□□ -1.22
UPF2-203ENST00000397053 HASPINQ8TF76 798 aa7.46□□□□□ -1.22
UPF2-203ENST00000397053 UBE2Q2Q8WVN8 375 aa7.46□□□□□ -1.22
UPF2-203ENST00000397053 CYGBQ8WWM9 190 aa7.46□□□□□ -1.22
UPF2-203ENST00000397053 ZKSCAN4Q969J2 545 aaPredicted RBP7.46□□□□□ -1.22
UPF2-203ENST00000397053 TUBGCP3Q96CW5 907 aa7.46□□□□□ -1.22
UPF2-203ENST00000397053 CYFIP2Q96F07 1278 aa7.46□□□□□ -1.22
UPF2-203ENST00000397053 ADI1Q9BV57 179 aa7.46□□□□□ -1.22
UPF2-203ENST00000397053 KCTD10Q9H3F6 313 aa7.46□□□□□ -1.22
UPF2-203ENST00000397053 LY9Q9HBG7 655 aa7.46□□□□□ -1.22
UPF2-203ENST00000397053 SMPD4Q9NXE4 827 aa7.46□□□□□ -1.22
UPF2-203ENST00000397053 DPP3Q9NY33 737 aa7.46□□□□□ -1.22
UPF2-203ENST00000397053 AMACRQ9UHK6 382 aa7.46□□□□□ -1.22
UPF2-203ENST00000397053 DSEQ9UL01 958 aa7.46□□□□□ -1.22
UPF2-203ENST00000397053 PPIEQ9UNP9 301 aaKnown RBP7.46□□□□□ -1.22
UPF2-203ENST00000397053 CDYLQ9Y232 598 aa7.46□□□□□ -1.22
UPF2-203ENST00000397053 PCDHGA4Q9Y5G9 962 aa7.46□□□□□ -1.22
UPF2-203ENST00000397053 USP6P35125 1406 aa7.46□□□□□ -1.22
UPF2-203ENST00000397053 SLC16A3O15427 465 aaKnown RBP7.46□□□□□ -1.22
UPF2-203ENST00000397053 SPAG6O75602 509 aa7.46□□□□□ -1.22
UPF2-203ENST00000397053 AMHP03971 560 aa7.46□□□□□ -1.22
UPF2-203ENST00000397053 ENO1P06733 434 aaKnown RBP7.46□□□□□ -1.22
UPF2-203ENST00000397053 HNRNPCP07910 306 aaKnown RBP eCLIP7.46□□□□□ -1.22
UPF2-203ENST00000397053 ZNF24P17028 368 aa7.46□□□□□ -1.22
UPF2-203ENST00000397053 GTF2H1P32780 548 aa7.46□□□□□ -1.22
UPF2-203ENST00000397053 NUP62P37198 522 aaPredicted RBP7.46□□□□□ -1.22
UPF2-203ENST00000397053 FMO5P49326 533 aa7.46□□□□□ -1.22
UPF2-203ENST00000397053 NBPF9Q3BBW0 867 aa7.46□□□□□ -1.22
UPF2-203ENST00000397053 ZNF484Q5JVG2 852 aa7.46□□□□□ -1.22
UPF2-203ENST00000397053 SMIM5Q71RC9 77 aa7.46□□□□□ -1.22
UPF2-203ENST00000397053 STAMBPL1Q96FJ0 436 aa7.46□□□□□ -1.22
UPF2-203ENST00000397053 MYCBPQ99417 103 aaPredicted RBP7.46□□□□□ -1.22
UPF2-203ENST00000397053 OSBPL8Q9BZF1 889 aa7.46□□□□□ -1.22
UPF2-203ENST00000397053 FHDC1Q9C0D6 1143 aaPredicted RBP7.46□□□□□ -1.22
UPF2-203ENST00000397053 REXO4Q9GZR2 422 aaKnown RBP7.46□□□□□ -1.22
UPF2-203ENST00000397053 RSPH9Q9H1X1 276 aaPredicted RBP7.46□□□□□ -1.22
UPF2-203ENST00000397053 RANBP17Q9H2T7 1088 aaKnown RBP7.46□□□□□ -1.22
UPF2-203ENST00000397053 TUBGCP4Q9UGJ1 667 aa7.46□□□□□ -1.22
UPF2-203ENST00000397053 USP18Q9UMW8 372 aa7.46□□□□□ -1.22
UPF2-203ENST00000397053 SMG5Q9UPR3 1016 aaKnown RBP7.46□□□□□ -1.22
UPF2-203ENST00000397053 AXIN2Q9Y2T1 843 aa7.46□□□□□ -1.22
UPF2-203ENST00000397053 GRID2IPA4D2P6 1211 aa7.46□□□□□ -1.22
UPF2-203ENST00000397053 SNRPAP09012 282 aaKnown RBP7.46□□□□□ -1.22
UPF2-203ENST00000397053 CLCN3P51790 818 aa7.46□□□□□ -1.22
UPF2-203ENST00000397053 DEFA1P59665 94 aa7.46□□□□□ -1.22
UPF2-203ENST00000397053 DEFA3P59666 94 aa7.46□□□□□ -1.22
UPF2-203ENST00000397053 SEMA3FQ13275 785 aa7.46□□□□□ -1.22
UPF2-203ENST00000397053 BYSLQ13895 437 aaKnown RBP7.46□□□□□ -1.22
UPF2-203ENST00000397053 ZCCHC8Q6NZY4 707 aaKnown RBP7.46□□□□□ -1.22
UPF2-203ENST00000397053 SYDE1Q6ZW31 735 aaPredicted RBP7.46□□□□□ -1.22
UPF2-203ENST00000397053 CD302Q8IX05 232 aa7.46□□□□□ -1.22
UPF2-203ENST00000397053 DHX40Q8IX18 779 aaKnown RBP7.46□□□□□ -1.22
UPF2-203ENST00000397053 KCNV2Q8TDN2 545 aa7.46□□□□□ -1.22
UPF2-203ENST00000397053 SUSD6Q92537 303 aa7.46□□□□□ -1.22
UPF2-203ENST00000397053 NSUN4Q96CB9 384 aaKnown RBP7.46□□□□□ -1.22
UPF2-203ENST00000397053 ABCG4Q9H172 646 aa7.46□□□□□ -1.22
UPF2-203ENST00000397053 RRAGDQ9NQL2 400 aaPredicted RBP7.46□□□□□ -1.22
UPF2-203ENST00000397053 ANKEF1Q9NU02 776 aa7.46□□□□□ -1.22
UPF2-203ENST00000397053 AHSPQ9NZD4 102 aa7.46□□□□□ -1.22
UPF2-203ENST00000397053 LZTS1Q9Y250 596 aa7.46□□□□□ -1.22
UPF2-203ENST00000397053 GMNCA6NCL1 334 aa7.45□□□□□ -1.22
UPF2-203ENST00000397053 TBC1D3BA6NDS4 549 aa7.45□□□□□ -1.22
UPF2-203ENST00000397053 ZNF500O60304 480 aaPredicted RBP7.45□□□□□ -1.22
UPF2-203ENST00000397053 TCN1P20061 433 aaPredicted RBP7.45□□□□□ -1.22
UPF2-203ENST00000397053 NOS3P29474 1203 aa7.45□□□□□ -1.22
UPF2-203ENST00000397053 MTM1Q13496 603 aa7.45□□□□□ -1.22
UPF2-203ENST00000397053 CYP51A1Q16850 503 aa7.45□□□□□ -1.22
UPF2-203ENST00000397053 SMTNL2Q2TAL5 461 aa7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms