RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 A0A0A6YYK5 440 aaPredicted RBP10.65□□□□□ -0.7
LIMCH1-203ENST00000396595 MYO1GB0I1T2 1018 aa10.65□□□□□ -0.7
LIMCH1-203ENST00000396595 AP1G2O75843 785 aa10.65□□□□□ -0.7
LIMCH1-203ENST00000396595 FKBP9O95302 570 aa10.65□□□□□ -0.7
LIMCH1-203ENST00000396595 GSNP06396 782 aa10.65□□□□□ -0.7
LIMCH1-203ENST00000396595 CYP2C8P10632 490 aa10.65□□□□□ -0.7
LIMCH1-203ENST00000396595 LRPAP1P30533 357 aa10.65□□□□□ -0.7
LIMCH1-203ENST00000396595 NUDT2P50583 147 aa10.65□□□□□ -0.7
LIMCH1-203ENST00000396595 NFIXQ14938 502 aa10.65□□□□□ -0.7
LIMCH1-203ENST00000396595 FKBP9P1Q75LS8 142 aa10.65□□□□□ -0.7
LIMCH1-203ENST00000396595 TRIM69Q86WT6 500 aa10.65□□□□□ -0.7
LIMCH1-203ENST00000396595 TBC1D16Q8TBP0 767 aa10.65□□□□□ -0.7
LIMCH1-203ENST00000396595 FAR2Q96K12 515 aa10.65□□□□□ -0.7
LIMCH1-203ENST00000396595 CAAP1Q9H8G2 361 aa10.65□□□□□ -0.7
LIMCH1-203ENST00000396595 AP4S1Q9Y587 144 aa10.65□□□□□ -0.7
LIMCH1-203ENST00000396595 SUPT3HB4E1H0 165 aa10.65□□□□□ -0.71
LIMCH1-203ENST00000396595 TNPO2O14787 897 aaKnown RBP10.65□□□□□ -0.71
LIMCH1-203ENST00000396595 CLASP2O75122 1294 aaKnown RBP10.65□□□□□ -0.71
LIMCH1-203ENST00000396595 H2AFYO75367 372 aaKnown RBP10.65□□□□□ -0.71
LIMCH1-203ENST00000396595 CSPG5O95196 566 aa10.65□□□□□ -0.71
LIMCH1-203ENST00000396595 THRAP10827 490 aa10.65□□□□□ -0.71
LIMCH1-203ENST00000396595 CYP11B2P19099 503 aa10.65□□□□□ -0.71
LIMCH1-203ENST00000396595 NUP107P57740 925 aa10.65□□□□□ -0.71
LIMCH1-203ENST00000396595 SMTNL2Q2TAL5 461 aa10.65□□□□□ -0.71
LIMCH1-203ENST00000396595 RSBN1Q5VWQ0 802 aaPredicted RBP10.65□□□□□ -0.71
LIMCH1-203ENST00000396595 HHIPL2Q6UWX4 724 aa10.65□□□□□ -0.71
LIMCH1-203ENST00000396595 FASTKD5Q7L8L6 764 aaKnown RBP10.65□□□□□ -0.71
LIMCH1-203ENST00000396595 EFHD2Q96C19 240 aaPredicted RBP10.65□□□□□ -0.71
LIMCH1-203ENST00000396595 ANKRD27Q96NW4 1050 aa10.65□□□□□ -0.71
LIMCH1-203ENST00000396595 CRAMP1Q96RY5 1269 aa10.65□□□□□ -0.71
LIMCH1-203ENST00000396595 CATSPERBQ9H7T0 1116 aa10.65□□□□□ -0.71
LIMCH1-203ENST00000396595 MAP3K20Q9NYL2 800 aaKnown RBP10.65□□□□□ -0.71
LIMCH1-203ENST00000396595 QRICH2Q9H0J4 1663 aa10.64□□□□□ -0.71
LIMCH1-203ENST00000396595 POLR1AO95602 1720 aaPredicted RBP10.64□□□□□ -0.71
LIMCH1-203ENST00000396595 GOLGA8TH3BQL2 631 aa10.64□□□□□ -0.71
LIMCH1-203ENST00000396595 PRPF4O43172 522 aaKnown RBP eCLIP10.64□□□□□ -0.71
LIMCH1-203ENST00000396595 GZMAP12544 262 aa10.64□□□□□ -0.71
LIMCH1-203ENST00000396595 FAM83EQ2M2I3 478 aa10.64□□□□□ -0.71
LIMCH1-203ENST00000396595 STRIP1Q5VSL9 837 aa10.64□□□□□ -0.71
LIMCH1-203ENST00000396595 PLA2G4FQ68DD2 849 aa10.64□□□□□ -0.71
LIMCH1-203ENST00000396595 LINC00523Q86TU6 105 aa10.64□□□□□ -0.71
LIMCH1-203ENST00000396595 MICU2Q8IYU8 434 aa10.64□□□□□ -0.71
LIMCH1-203ENST00000396595 PABPC5Q96DU9 382 aaKnown RBP10.64□□□□□ -0.71
LIMCH1-203ENST00000396595 LATS2Q9NRM7 1088 aa10.64□□□□□ -0.71
LIMCH1-203ENST00000396595 PRMT7Q9NVM4 692 aaPredicted RBP10.64□□□□□ -0.71
LIMCH1-203ENST00000396595 SLC39A10Q9ULF5 831 aa10.64□□□□□ -0.71
LIMCH1-203ENST00000396595 PKP3Q9Y446 797 aa10.64□□□□□ -0.71
LIMCH1-203ENST00000396595 TNS3Q68CZ2 1445 aa10.64□□□□□ -0.71
LIMCH1-203ENST00000396595 GRAP2O75791 330 aa10.64□□□□□ -0.71
LIMCH1-203ENST00000396595 DGKIO75912 1065 aa10.64□□□□□ -0.71
LIMCH1-203ENST00000396595 ATP6V1B1P15313 513 aa10.64□□□□□ -0.71
LIMCH1-203ENST00000396595 MUTP22033 750 aa10.64□□□□□ -0.71
LIMCH1-203ENST00000396595 GRIK1P39086 918 aa10.64□□□□□ -0.71
LIMCH1-203ENST00000396595 IL12RB1P42701 662 aa10.64□□□□□ -0.71
LIMCH1-203ENST00000396595 HMGCS2P54868 508 aa10.64□□□□□ -0.71
LIMCH1-203ENST00000396595 OVGP1Q12889 678 aa10.64□□□□□ -0.71
LIMCH1-203ENST00000396595 METTL5Q9NRN9 209 aaKnown RBP10.64□□□□□ -0.71
LIMCH1-203ENST00000396595 CD274Q9NZQ7 290 aa10.64□□□□□ -0.71
LIMCH1-203ENST00000396595 DMGDHQ9UI17 866 aaKnown RBP10.64□□□□□ -0.71
LIMCH1-203ENST00000396595 HAO1Q9UJM8 370 aa10.64□□□□□ -0.71
LIMCH1-203ENST00000396595 EVPLLA8MZ36 301 aa10.64□□□□□ -0.71
LIMCH1-203ENST00000396595 GRB10Q13322 594 aa10.64□□□□□ -0.71
LIMCH1-203ENST00000396595 ATF7IP2Q5U623 682 aa10.64□□□□□ -0.71
LIMCH1-203ENST00000396595 CDKAL1Q5VV42 579 aa10.64□□□□□ -0.71
LIMCH1-203ENST00000396595 TERB1Q8NA31 727 aa10.64□□□□□ -0.71
LIMCH1-203ENST00000396595 ATP8B4Q8TF62 1192 aa10.64□□□□□ -0.71
LIMCH1-203ENST00000396595 WNK4Q96J92 1243 aa10.64□□□□□ -0.71
LIMCH1-203ENST00000396595 NAT9Q9BTE0 207 aa10.64□□□□□ -0.71
LIMCH1-203ENST00000396595 BBS2Q9BXC9 721 aa10.64□□□□□ -0.71
LIMCH1-203ENST00000396595 TARBP1Q13395 1621 aaKnown RBP10.64□□□□□ -0.71
LIMCH1-203ENST00000396595 SPDYE5A6NIY4 337 aa10.64□□□□□ -0.71
LIMCH1-203ENST00000396595 DPYSL4O14531 572 aa10.64□□□□□ -0.71
LIMCH1-203ENST00000396595 GHRP10912 638 aa10.64□□□□□ -0.71
LIMCH1-203ENST00000396595 CALB2P22676 271 aa10.64□□□□□ -0.71
LIMCH1-203ENST00000396595 HERVK_113P62684 666 aa10.64□□□□□ -0.71
LIMCH1-203ENST00000396595 CACNB2Q08289 660 aaPredicted RBP10.64□□□□□ -0.71
LIMCH1-203ENST00000396595 SPDYE7PQ495Y7 208 aa10.64□□□□□ -0.71
LIMCH1-203ENST00000396595 CLEC10AQ8IUN9 316 aa10.64□□□□□ -0.71
LIMCH1-203ENST00000396595 BBS7Q8IWZ6 715 aa10.64□□□□□ -0.71
LIMCH1-203ENST00000396595 LACRTQ9GZZ8 138 aa10.64□□□□□ -0.71
LIMCH1-203ENST00000396595 KBTBD4Q9NVX7 518 aa10.64□□□□□ -0.71
LIMCH1-203ENST00000396595 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP10.64□□□□□ -0.71
LIMCH1-203ENST00000396595 MADDQ8WXG6 1647 aa10.64□□□□□ -0.71
LIMCH1-203ENST00000396595 SETBP1Q9Y6X0 1596 aa10.64□□□□□ -0.71
LIMCH1-203ENST00000396595 H3BQF6 201 aa10.63□□□□□ -0.71
LIMCH1-203ENST00000396595 PAX7P23759 505 aa10.63□□□□□ -0.71
LIMCH1-203ENST00000396595 RXRBP28702 533 aa10.63□□□□□ -0.71
LIMCH1-203ENST00000396595 DCTN2Q13561 401 aaKnown RBP10.63□□□□□ -0.71
LIMCH1-203ENST00000396595 CUL2Q13617 745 aa10.63□□□□□ -0.71
LIMCH1-203ENST00000396595 IER5Q5VY09 327 aa10.63□□□□□ -0.71
LIMCH1-203ENST00000396595 C2orf69Q8N8R5 385 aa10.63□□□□□ -0.71
LIMCH1-203ENST00000396595 IPMKQ8NFU5 416 aa10.63□□□□□ -0.71
LIMCH1-203ENST00000396595 WDR60Q8WVS4 1066 aa10.63□□□□□ -0.71
LIMCH1-203ENST00000396595 FOPNLQ96NB1 174 aa10.63□□□□□ -0.71
LIMCH1-203ENST00000396595 EFCAB1Q9HAE3 211 aa10.63□□□□□ -0.71
LIMCH1-203ENST00000396595 EXOSC4Q9NPD3 245 aaKnown RBP10.63□□□□□ -0.71
LIMCH1-203ENST00000396595 DUSP10Q9Y6W6 482 aa10.63□□□□□ -0.71
LIMCH1-203ENST00000396595 RNF17Q9BXT8 1623 aaKnown RBP10.63□□□□□ -0.71
LIMCH1-203ENST00000396595 FOXN3O00409 490 aaPredicted RBP10.63□□□□□ -0.71
LIMCH1-203ENST00000396595 MTM1Q13496 603 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms