RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 SREBF2Q12772 1141 aa13.27□□□□□ -0.28
CCDC88C-204ENST00000389857 UBA3Q8TBC4 463 aa13.27□□□□□ -0.28
CCDC88C-204ENST00000389857 ZNF669Q96BR6 464 aaPredicted RBP13.27□□□□□ -0.28
CCDC88C-204ENST00000389857 EPS8L2Q9H6S3 715 aa13.27□□□□□ -0.28
CCDC88C-204ENST00000389857 CYP19A1P11511 503 aaPredicted RBP13.27□□□□□ -0.29
CCDC88C-204ENST00000389857 FNTAP49354 379 aa13.27□□□□□ -0.29
CCDC88C-204ENST00000389857 IRX1P78414 480 aaPredicted RBP13.27□□□□□ -0.29
CCDC88C-204ENST00000389857 EPHA10Q5JZY3 1008 aa13.27□□□□□ -0.29
CCDC88C-204ENST00000389857 DDI1Q8WTU0 396 aa13.27□□□□□ -0.29
CCDC88C-204ENST00000389857 C9orf72Q96LT7 481 aa13.27□□□□□ -0.29
CCDC88C-204ENST00000389857 UBE2OQ9C0C9 1292 aaKnown RBP13.27□□□□□ -0.29
CCDC88C-204ENST00000389857 ZBTB7AO95365 584 aa13.27□□□□□ -0.29
CCDC88C-204ENST00000389857 IFNA14P01570 189 aa13.27□□□□□ -0.29
CCDC88C-204ENST00000389857 COMTP21964 271 aa13.27□□□□□ -0.29
CCDC88C-204ENST00000389857 ALDH7A1P49419 539 aaKnown RBP13.27□□□□□ -0.29
CCDC88C-204ENST00000389857 NUDT2P50583 147 aa13.27□□□□□ -0.29
CCDC88C-204ENST00000389857 TGM3Q08188 693 aa13.27□□□□□ -0.29
CCDC88C-204ENST00000389857 MICALL2Q8IY33 904 aa13.27□□□□□ -0.29
CCDC88C-204ENST00000389857 DYRK1BQ9Y463 629 aa13.27□□□□□ -0.29
CCDC88C-204ENST00000389857 KANSL1LA0AUZ9 987 aa13.27□□□□□ -0.29
CCDC88C-204ENST00000389857 PHF20L1A8MW92 1017 aa13.27□□□□□ -0.29
CCDC88C-204ENST00000389857 F5H5T6 163 aa13.27□□□□□ -0.29
CCDC88C-204ENST00000389857 VPS26AO75436 327 aa13.27□□□□□ -0.29
CCDC88C-204ENST00000389857 STAG3L1P0CL83 205 aa13.27□□□□□ -0.29
CCDC88C-204ENST00000389857 TGM2P21980 687 aa13.27□□□□□ -0.29
CCDC88C-204ENST00000389857 RPS7P62081 194 aaKnown RBP13.27□□□□□ -0.29
CCDC88C-204ENST00000389857 SHROOM1Q2M3G4 852 aaPredicted RBP13.27□□□□□ -0.29
CCDC88C-204ENST00000389857 SMTNL2Q2TAL5 461 aa13.27□□□□□ -0.29
CCDC88C-204ENST00000389857 METTL16Q86W50 562 aaKnown RBP13.27□□□□□ -0.29
CCDC88C-204ENST00000389857 FAM71DQ8N9W8 422 aa13.27□□□□□ -0.29
CCDC88C-204ENST00000389857 CHST13Q8NET6 341 aa13.27□□□□□ -0.29
CCDC88C-204ENST00000389857 SERPINB12Q96P63 405 aa13.27□□□□□ -0.29
CCDC88C-204ENST00000389857 HACL1Q9UJ83 578 aa13.27□□□□□ -0.29
CCDC88C-204ENST00000389857 FLT1P17948 1338 aa13.27□□□□□ -0.29
CCDC88C-204ENST00000389857 ZBTB39O15060 712 aa13.27□□□□□ -0.29
CCDC88C-204ENST00000389857 CST8O60676 142 aa13.27□□□□□ -0.29
CCDC88C-204ENST00000389857 ELOA2Q8IYF1 753 aaPredicted RBP13.27□□□□□ -0.29
CCDC88C-204ENST00000389857 ADSSL1Q8N142 457 aa13.27□□□□□ -0.29
CCDC88C-204ENST00000389857 MMGT1Q8N4V1 131 aa13.27□□□□□ -0.29
CCDC88C-204ENST00000389857 FAM84BQ96KN1 310 aaPredicted RBP13.27□□□□□ -0.29
CCDC88C-204ENST00000389857 NMRK2Q9NPI5 230 aa13.27□□□□□ -0.29
CCDC88C-204ENST00000389857 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.27□□□□□ -0.29
CCDC88C-204ENST00000389857 CYP39A1Q9NYL5 469 aa13.27□□□□□ -0.29
CCDC88C-204ENST00000389857 GPC1P35052 558 aa13.26□□□□□ -0.29
CCDC88C-204ENST00000389857 VHLP40337 213 aa13.26□□□□□ -0.29
CCDC88C-204ENST00000389857 ERFP50548 548 aa13.26□□□□□ -0.29
CCDC88C-204ENST00000389857 FUT11Q495W5 492 aa13.26□□□□□ -0.29
CCDC88C-204ENST00000389857 SLC30A9Q6PML9 568 aa13.26□□□□□ -0.29
CCDC88C-204ENST00000389857 CNPY3Q9BT09 278 aa13.26□□□□□ -0.29
CCDC88C-204ENST00000389857 IPPQ9Y573 584 aa13.26□□□□□ -0.29
CCDC88C-204ENST00000389857 C17orf102A2RUQ5 167 aa13.26□□□□□ -0.29
CCDC88C-204ENST00000389857 ASS1P00966 412 aaKnown RBP13.26□□□□□ -0.29
CCDC88C-204ENST00000389857 HPGDP15428 266 aa13.26□□□□□ -0.29
CCDC88C-204ENST00000389857 LAYNQ6UX15 382 aa13.26□□□□□ -0.29
CCDC88C-204ENST00000389857 APLFQ8IW19 511 aaPredicted RBP13.26□□□□□ -0.29
CCDC88C-204ENST00000389857 C3orf20Q8ND61 904 aa13.26□□□□□ -0.29
CCDC88C-204ENST00000389857 RIN3Q8TB24 985 aa13.26□□□□□ -0.29
CCDC88C-204ENST00000389857 SYN2Q92777 582 aaPredicted RBP13.26□□□□□ -0.29
CCDC88C-204ENST00000389857 WDR24Q96S15 920 aa13.26□□□□□ -0.29
CCDC88C-204ENST00000389857 PDZK1P1A8MUH7 402 aa13.26□□□□□ -0.29
CCDC88C-204ENST00000389857 NDUFB5O43674 189 aa13.26□□□□□ -0.29
CCDC88C-204ENST00000389857 GLRA3O75311 464 aa13.26□□□□□ -0.29
CCDC88C-204ENST00000389857 ERVK-10P10266 1014 aa13.26□□□□□ -0.29
CCDC88C-204ENST00000389857 CYP2C9P11712 490 aa13.26□□□□□ -0.29
CCDC88C-204ENST00000389857 MROH9Q5TGP6 573 aa13.26□□□□□ -0.29
CCDC88C-204ENST00000389857 GPR141Q7Z602 305 aa13.26□□□□□ -0.29
CCDC88C-204ENST00000389857 MXRA8Q9BRK3 442 aa13.26□□□□□ -0.29
CCDC88C-204ENST00000389857 ADAM33Q9BZ11 813 aa13.26□□□□□ -0.29
CCDC88C-204ENST00000389857 SERPINB3P29508 390 aa13.26□□□□□ -0.29
CCDC88C-204ENST00000389857 ITGA9Q13797 1035 aa13.26□□□□□ -0.29
CCDC88C-204ENST00000389857 CCNJLQ8IV13 435 aa13.26□□□□□ -0.29
CCDC88C-204ENST00000389857 MARCH10Q8NA82 808 aaPredicted RBP13.26□□□□□ -0.29
CCDC88C-204ENST00000389857 DPP3Q9NY33 737 aa13.26□□□□□ -0.29
CCDC88C-204ENST00000389857 IL1RAPL1Q9NZN1 696 aa13.26□□□□□ -0.29
CCDC88C-204ENST00000389857 RGS5O15539 181 aa13.26□□□□□ -0.29
CCDC88C-204ENST00000389857 ADRM1Q16186 407 aa13.26□□□□□ -0.29
CCDC88C-204ENST00000389857 RNF180Q86T96 592 aa13.26□□□□□ -0.29
CCDC88C-204ENST00000389857 RDM1Q8NG50 284 aa13.26□□□□□ -0.29
CCDC88C-204ENST00000389857 MKNK1Q9BUB5 465 aa13.26□□□□□ -0.29
CCDC88C-204ENST00000389857 ISCUQ9H1K1 167 aa13.26□□□□□ -0.29
CCDC88C-204ENST00000389857 ARMC7Q9H6L4 198 aa13.26□□□□□ -0.29
CCDC88C-204ENST00000389857 RPRD1BQ9NQG5 326 aaKnown RBP13.26□□□□□ -0.29
CCDC88C-204ENST00000389857 FOXN1O15353 648 aa13.25□□□□□ -0.29
CCDC88C-204ENST00000389857 ALFQ53S48 1182 aa13.25□□□□□ -0.29
CCDC88C-204ENST00000389857 ARMCX4Q5H9R4 360 aa13.25□□□□□ -0.29
CCDC88C-204ENST00000389857 CCNI2Q6ZMN8 369 aaPredicted RBP13.25□□□□□ -0.29
CCDC88C-204ENST00000389857 NT5DC4Q86YG4 428 aa13.25□□□□□ -0.29
CCDC88C-204ENST00000389857 CYP4Z2PQ8N1L4 340 aa13.25□□□□□ -0.29
CCDC88C-204ENST00000389857 MYO1HQ8N1T3 1032 aa13.25□□□□□ -0.29
CCDC88C-204ENST00000389857 CASP10Q92851 521 aa13.25□□□□□ -0.29
CCDC88C-204ENST00000389857 SH3GL1Q99961 368 aa13.25□□□□□ -0.29
CCDC88C-204ENST00000389857 CNOT7Q9UIV1 285 aaKnown RBP13.25□□□□□ -0.29
CCDC88C-204ENST00000389857 GTF2A1LQ9UNN4 478 aa13.25□□□□□ -0.29
CCDC88C-204ENST00000389857 MTF1Q14872 753 aa13.25□□□□□ -0.29
CCDC88C-204ENST00000389857 GPRC5AQ8NFJ5 357 aa13.25□□□□□ -0.29
CCDC88C-204ENST00000389857 RIN2Q8WYP3 895 aaPredicted RBP13.25□□□□□ -0.29
CCDC88C-204ENST00000389857 ERP44Q9BS26 406 aa13.25□□□□□ -0.29
CCDC88C-204ENST00000389857 ANKEF1Q9NU02 776 aa13.25□□□□□ -0.29
CCDC88C-204ENST00000389857 RAD51CO43502 376 aa13.25□□□□□ -0.29
CCDC88C-204ENST00000389857 CETPP11597 493 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms