RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 PPP1R26Q5T8A7 1209 aaPredicted RBP19.18■□□□□ 0.66
CCDC88C-203ENST00000389856 ANKRD52Q8NB46 1076 aa19.18■□□□□ 0.66
CCDC88C-203ENST00000389856 B3GALNT2Q8NCR0 500 aa19.18■□□□□ 0.66
CCDC88C-203ENST00000389856 CCDC26Q8TAB7 109 aa19.18■□□□□ 0.66
CCDC88C-203ENST00000389856 MRPL9Q9BYD2 267 aaKnown RBP19.18■□□□□ 0.66
CCDC88C-203ENST00000389856 TMEM191CA6NGB0 347 aa19.18■□□□□ 0.66
CCDC88C-203ENST00000389856 SIGLEC16A6NMB1 481 aa19.18■□□□□ 0.66
CCDC88C-203ENST00000389856 A6NNZ2 444 aa19.18■□□□□ 0.66
CCDC88C-203ENST00000389856 BHMG1C9JSJ3 638 aaPredicted RBP19.18■□□□□ 0.66
CCDC88C-203ENST00000389856 ENPP3O14638 875 aa19.18■□□□□ 0.66
CCDC88C-203ENST00000389856 TRAPPC3O43617 180 aa19.18■□□□□ 0.66
CCDC88C-203ENST00000389856 CXCL10P02778 98 aa19.18■□□□□ 0.66
CCDC88C-203ENST00000389856 FGFR1P11362 822 aa19.18■□□□□ 0.66
CCDC88C-203ENST00000389856 KRT3P12035 628 aa19.18■□□□□ 0.66
CCDC88C-203ENST00000389856 ACADSBP45954 432 aa19.18■□□□□ 0.66
CCDC88C-203ENST00000389856 SLC7A5Q01650 507 aa19.18■□□□□ 0.66
CCDC88C-203ENST00000389856 TUBB8Q3ZCM7 444 aa19.18■□□□□ 0.66
CCDC88C-203ENST00000389856 SEL1L2Q5TEA6 688 aa19.18■□□□□ 0.66
CCDC88C-203ENST00000389856 WSCD1Q658N2 575 aa19.18■□□□□ 0.66
CCDC88C-203ENST00000389856 MAATS1Q7Z4T9 603 aa19.18■□□□□ 0.66
CCDC88C-203ENST00000389856 UBA3Q8TBC4 463 aa19.18■□□□□ 0.66
CCDC88C-203ENST00000389856 LINC01599Q8WXQ3 324 aa19.18■□□□□ 0.66
CCDC88C-203ENST00000389856 SH3GL2Q99962 352 aa19.18■□□□□ 0.66
CCDC88C-203ENST00000389856 C11orf49Q9H6J7 331 aa19.18■□□□□ 0.66
CCDC88C-203ENST00000389856 EPB41L5Q9HCM4 733 aa19.18■□□□□ 0.66
CCDC88C-203ENST00000389856 FAM49BQ9NUQ9 324 aa19.18■□□□□ 0.66
CCDC88C-203ENST00000389856 DDX43Q9NXZ2 648 aaKnown RBP19.18■□□□□ 0.66
CCDC88C-203ENST00000389856 CDH9Q9ULB4 789 aa19.18■□□□□ 0.66
CCDC88C-203ENST00000389856 PCDHA3Q9Y5H8 950 aa19.18■□□□□ 0.66
CCDC88C-203ENST00000389856 DDX3YO15523 660 aaKnown RBP19.17■□□□□ 0.66
CCDC88C-203ENST00000389856 PSTPIP1O43586 416 aa19.17■□□□□ 0.66
CCDC88C-203ENST00000389856 GLI1P08151 1106 aa19.17■□□□□ 0.66
CCDC88C-203ENST00000389856 CETN2P41208 172 aa19.17■□□□□ 0.66
CCDC88C-203ENST00000389856 RWDD2BP57060 319 aa19.17■□□□□ 0.66
CCDC88C-203ENST00000389856 FAAP100Q0VG06 881 aa19.17■□□□□ 0.66
CCDC88C-203ENST00000389856 THEM5Q8N1Q8 247 aa19.17■□□□□ 0.66
CCDC88C-203ENST00000389856 C12orf29Q8N999 325 aa19.17■□□□□ 0.66
CCDC88C-203ENST00000389856 FNIP1Q8TF40 1166 aa19.17■□□□□ 0.66
CCDC88C-203ENST00000389856 CPXM1Q96SM3 734 aa19.17■□□□□ 0.66
CCDC88C-203ENST00000389856 RUFY1Q96T51 708 aa19.17■□□□□ 0.66
CCDC88C-203ENST00000389856 TMEM106CQ9BVX2 250 aa19.17■□□□□ 0.66
CCDC88C-203ENST00000389856 CHORDC1Q9UHD1 332 aaPredicted RBP19.17■□□□□ 0.66
CCDC88C-203ENST00000389856 GOLGA6L10A0A0M3HER8 536 aa19.16■□□□□ 0.66
CCDC88C-203ENST00000389856 TMEM189-UBE2V1I3L0A0 370 aa19.16■□□□□ 0.66
CCDC88C-203ENST00000389856 CYP11A1P05108 521 aa19.16■□□□□ 0.66
CCDC88C-203ENST00000389856 PTPN1P18031 435 aaKnown RBP19.16■□□□□ 0.66
CCDC88C-203ENST00000389856 TYMPP19971 482 aa19.16■□□□□ 0.66
CCDC88C-203ENST00000389856 GGCXP38435 758 aa19.16■□□□□ 0.66
CCDC88C-203ENST00000389856 AFF1P51825 1210 aaKnown RBP19.16■□□□□ 0.66
CCDC88C-203ENST00000389856 GUCY2DQ02846 1103 aa19.16■□□□□ 0.66
CCDC88C-203ENST00000389856 C2CD6Q53TS8 623 aa19.16■□□□□ 0.66
CCDC88C-203ENST00000389856 XYLT1Q86Y38 959 aa19.16■□□□□ 0.66
CCDC88C-203ENST00000389856 RHOT1Q8IXI2 618 aa19.16■□□□□ 0.66
CCDC88C-203ENST00000389856 CD101Q93033 1021 aa19.16■□□□□ 0.66
CCDC88C-203ENST00000389856 HSFY1Q96LI6 401 aa19.16■□□□□ 0.66
CCDC88C-203ENST00000389856 MCEEQ96PE7 176 aa19.16■□□□□ 0.66
CCDC88C-203ENST00000389856 HNRNPABQ99729 332 aaKnown RBP19.16■□□□□ 0.66
CCDC88C-203ENST00000389856 SYT15Q9BQS2 421 aa19.16■□□□□ 0.66
CCDC88C-203ENST00000389856 ATP11BQ9Y2G3 1177 aa19.16■□□□□ 0.66
CCDC88C-203ENST00000389856 TCRBV5S1A1TA0A578 114 aa19.15■□□□□ 0.66
CCDC88C-203ENST00000389856 GOLGA8SH3BPF8 625 aa19.15■□□□□ 0.66
CCDC88C-203ENST00000389856 M0QZQ0 153 aa19.15■□□□□ 0.66
CCDC88C-203ENST00000389856 AGPSO00116 658 aa19.15■□□□□ 0.66
CCDC88C-203ENST00000389856 KRIT1O00522 736 aa19.15■□□□□ 0.66
CCDC88C-203ENST00000389856 CLTBP09497 229 aa19.15■□□□□ 0.66
CCDC88C-203ENST00000389856 LMO2P25791 158 aa19.15■□□□□ 0.66
CCDC88C-203ENST00000389856 MNX1P50219 401 aaPredicted RBP19.15■□□□□ 0.66
CCDC88C-203ENST00000389856 DSC1Q08554 894 aa19.15■□□□□ 0.66
CCDC88C-203ENST00000389856 ACAP1Q15027 740 aa19.15■□□□□ 0.66
CCDC88C-203ENST00000389856 MAPRE1Q15691 268 aaKnown RBP19.15■□□□□ 0.66
CCDC88C-203ENST00000389856 PTPROQ16827 1216 aa19.15■□□□□ 0.66
CCDC88C-203ENST00000389856 PKDCCQ504Y2 493 aa19.15■□□□□ 0.66
CCDC88C-203ENST00000389856 CLLU1OSQ5K130 101 aa19.15■□□□□ 0.66
CCDC88C-203ENST00000389856 PPP1R15BQ5SWA1 713 aa19.15■□□□□ 0.66
CCDC88C-203ENST00000389856 CYP4A22Q5TCH4 519 aa19.15■□□□□ 0.66
CCDC88C-203ENST00000389856 PHLDB2Q86SQ0 1253 aa19.15■□□□□ 0.66
CCDC88C-203ENST00000389856 NPAS4Q8IUM7 802 aa19.15■□□□□ 0.66
CCDC88C-203ENST00000389856 GSPT2Q8IYD1 628 aaKnown RBP19.15■□□□□ 0.66
CCDC88C-203ENST00000389856 NIPA2Q8N8Q9 360 aa19.15■□□□□ 0.66
CCDC88C-203ENST00000389856 MCRS1Q96EZ8 462 aa19.15■□□□□ 0.66
CCDC88C-203ENST00000389856 BTBD6Q96KE9 485 aa19.15■□□□□ 0.66
CCDC88C-203ENST00000389856 SUSD3Q96L08 255 aa19.15■□□□□ 0.66
CCDC88C-203ENST00000389856 NCAPGQ9BPX3 1015 aa19.15■□□□□ 0.66
CCDC88C-203ENST00000389856 DPEP3Q9H4B8 488 aa19.15■□□□□ 0.66
CCDC88C-203ENST00000389856 FAM204AQ9H8W3 233 aa19.15■□□□□ 0.66
CCDC88C-203ENST00000389856 TMEM39AQ9NV64 488 aa19.15■□□□□ 0.66
CCDC88C-203ENST00000389856 CYTH4Q9UIA0 394 aa19.15■□□□□ 0.66
CCDC88C-203ENST00000389856 RAD51CO43502 376 aa19.14■□□□□ 0.66
CCDC88C-203ENST00000389856 ADORA2BP29275 332 aa19.14■□□□□ 0.66
CCDC88C-203ENST00000389856 SCNN1AP37088 669 aa19.14■□□□□ 0.66
CCDC88C-203ENST00000389856 LMAN1P49257 510 aa19.14■□□□□ 0.66
CCDC88C-203ENST00000389856 TIGD5Q53EQ6 642 aa19.14■□□□□ 0.66
CCDC88C-203ENST00000389856 LEKR1Q6ZMV7 388 aa19.14■□□□□ 0.66
CCDC88C-203ENST00000389856 OSTM1Q86WC4 334 aa19.14■□□□□ 0.66
CCDC88C-203ENST00000389856 SLC2A14Q8TDB8 520 aa19.14■□□□□ 0.66
CCDC88C-203ENST00000389856 MAIP1Q8WWC4 291 aa19.14■□□□□ 0.66
CCDC88C-203ENST00000389856 RNPC3Q96LT9 517 aaKnown RBP19.14■□□□□ 0.66
CCDC88C-203ENST00000389856 MED10Q9BTT4 135 aa19.14■□□□□ 0.66
CCDC88C-203ENST00000389856 SLC4A5Q9BY07 1137 aa19.14■□□□□ 0.66
CCDC88C-203ENST00000389856 PPP1R12CQ9BZL4 782 aa19.14■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms