RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 SUPT3HB4E1H0 165 aa9.04□□□□□ -0.96
LIG3-202ENST00000378526 C4orf46Q504U0 113 aa9.04□□□□□ -0.96
LIG3-202ENST00000378526 CCSAPQ6IQ19 270 aaPredicted RBP9.04□□□□□ -0.96
LIG3-202ENST00000378526 BARGINQ6ZT62 677 aa9.04□□□□□ -0.96
LIG3-202ENST00000378526 NET1Q7Z628 596 aaPredicted RBP9.04□□□□□ -0.96
LIG3-202ENST00000378526 KBTBD3Q8NAB2 608 aa9.04□□□□□ -0.96
LIG3-202ENST00000378526 KLHL1Q9NR64 748 aa9.04□□□□□ -0.96
LIG3-202ENST00000378526 HEY2Q9UBP5 337 aa9.04□□□□□ -0.96
LIG3-202ENST00000378526 AMACRQ9UHK6 382 aa9.04□□□□□ -0.96
LIG3-202ENST00000378526 PHTF1Q9UMS5 762 aa9.04□□□□□ -0.96
LIG3-202ENST00000378526 hCG_1642624A0A1W2PR95 340 aa9.04□□□□□ -0.96
LIG3-202ENST00000378526 THRBP10828 461 aa9.04□□□□□ -0.96
LIG3-202ENST00000378526 GTF2IP78347 998 aa9.04□□□□□ -0.96
LIG3-202ENST00000378526 BNIP1Q12981 228 aa9.04□□□□□ -0.96
LIG3-202ENST00000378526 UBE3CQ15386 1083 aa9.04□□□□□ -0.96
LIG3-202ENST00000378526 ZDHHC13Q8IUH4 622 aa9.04□□□□□ -0.96
LIG3-202ENST00000378526 ZNF564Q8TBZ8 553 aaPredicted RBP9.04□□□□□ -0.96
LIG3-202ENST00000378526 SCFD2Q8WU76 684 aa9.04□□□□□ -0.96
LIG3-202ENST00000378526 SGF29Q96ES7 293 aa9.04□□□□□ -0.96
LIG3-202ENST00000378526 EIF3LQ9Y262 564 aaKnown RBP9.04□□□□□ -0.96
LIG3-202ENST00000378526 SIN3BO75182 1162 aa9.04□□□□□ -0.96
LIG3-202ENST00000378526 CCNE2O96020 404 aa9.04□□□□□ -0.96
LIG3-202ENST00000378526 FOSP01100 380 aaPredicted RBP9.04□□□□□ -0.96
LIG3-202ENST00000378526 EIF5AL1Q6IS14 154 aaKnown RBP9.04□□□□□ -0.96
LIG3-202ENST00000378526 ZNF605Q86T29 641 aa9.04□□□□□ -0.96
LIG3-202ENST00000378526 RASAL3Q86YV0 1011 aa9.04□□□□□ -0.96
LIG3-202ENST00000378526 GNPTGQ9UJJ9 305 aa9.04□□□□□ -0.96
LIG3-202ENST00000378526 STX16-NPEPL1H3BU86 382 aa9.04□□□□□ -0.96
LIG3-202ENST00000378526 STX16O14662 325 aa9.04□□□□□ -0.96
LIG3-202ENST00000378526 MGRN1O60291 552 aa9.04□□□□□ -0.96
LIG3-202ENST00000378526 PARNO95453 639 aaKnown RBP9.04□□□□□ -0.96
LIG3-202ENST00000378526 CNTFP26441 200 aa9.04□□□□□ -0.96
LIG3-202ENST00000378526 CYP27A1Q02318 531 aa9.04□□□□□ -0.96
LIG3-202ENST00000378526 XKR9Q5GH70 373 aa9.04□□□□□ -0.96
LIG3-202ENST00000378526 ENOSF1Q7L5Y1 443 aa9.04□□□□□ -0.96
LIG3-202ENST00000378526 DHRSXQ8N5I4 330 aa9.04□□□□□ -0.96
LIG3-202ENST00000378526 AADATQ8N5Z0 425 aa9.04□□□□□ -0.96
LIG3-202ENST00000378526 DPF3Q92784 378 aa9.04□□□□□ -0.96
LIG3-202ENST00000378526 KCTD14Q9BQ13 255 aaPredicted RBP9.04□□□□□ -0.96
LIG3-202ENST00000378526 PRDM11Q9NQV5 511 aa9.04□□□□□ -0.96
LIG3-202ENST00000378526 HEY1Q9Y5J3 304 aa9.04□□□□□ -0.96
LIG3-202ENST00000378526 BCLAF3A2AJT9 711 aaKnown RBP9.04□□□□□ -0.96
LIG3-202ENST00000378526 NCAM1P13591 858 aa9.04□□□□□ -0.96
LIG3-202ENST00000378526 CBX5P45973 191 aa9.04□□□□□ -0.96
LIG3-202ENST00000378526 IREB2P48200 963 aaKnown RBP9.04□□□□□ -0.96
LIG3-202ENST00000378526 CDH4P55283 916 aa9.04□□□□□ -0.96
LIG3-202ENST00000378526 GEMIN4P57678 1058 aaKnown RBP9.04□□□□□ -0.96
LIG3-202ENST00000378526 FAM160B1Q5W0V3 765 aa9.04□□□□□ -0.96
LIG3-202ENST00000378526 DUS1LQ6P1R4 473 aaKnown RBP9.04□□□□□ -0.96
LIG3-202ENST00000378526 C8orf59Q8N0T1 100 aaPredicted RBP9.04□□□□□ -0.96
LIG3-202ENST00000378526 ZBTB8BQ8NAP8 495 aaPredicted RBP9.04□□□□□ -0.96
LIG3-202ENST00000378526 FAM193BQ96PV7 902 aaPredicted RBP9.04□□□□□ -0.96
LIG3-202ENST00000378526 RBM15Q96T37 977 aaKnown RBP eCLIP9.04□□□□□ -0.96
LIG3-202ENST00000378526 DCLK3Q9C098 648 aa9.04□□□□□ -0.96
LIG3-202ENST00000378526 ISCUQ9H1K1 167 aa9.04□□□□□ -0.96
LIG3-202ENST00000378526 ADAM22Q9P0K1 906 aa9.04□□□□□ -0.96
LIG3-202ENST00000378526 CHPF2Q9P2E5 772 aa9.04□□□□□ -0.96
LIG3-202ENST00000378526 MARCOQ9UEW3 520 aaPredicted RBP9.04□□□□□ -0.96
LIG3-202ENST00000378526 TTC7AQ9ULT0 858 aaPredicted RBP9.04□□□□□ -0.96
LIG3-202ENST00000378526 PCDH11YQ9BZA8 1340 aa9.04□□□□□ -0.96
LIG3-202ENST00000378526 KPNA1P52294 538 aaPredicted RBP9.03□□□□□ -0.96
LIG3-202ENST00000378526 EMC2Q15006 297 aa9.03□□□□□ -0.96
LIG3-202ENST00000378526 MAPKAPK5Q8IW41 473 aa9.03□□□□□ -0.96
LIG3-202ENST00000378526 CDH19Q9H159 772 aa9.03□□□□□ -0.96
LIG3-202ENST00000378526 RNPEPL1Q9HAU8 725 aa9.03□□□□□ -0.96
LIG3-202ENST00000378526 NEK6Q9HC98 313 aa9.03□□□□□ -0.96
LIG3-202ENST00000378526 DUSP12Q9UNI6 340 aa9.03□□□□□ -0.96
LIG3-202ENST00000378526 GTF2A1LQ9UNN4 478 aa9.03□□□□□ -0.96
LIG3-202ENST00000378526 ZBED4O75132 1171 aa9.03□□□□□ -0.96
LIG3-202ENST00000378526 ERFP50548 548 aa9.03□□□□□ -0.96
LIG3-202ENST00000378526 COPZ1P61923 177 aa9.03□□□□□ -0.96
LIG3-202ENST00000378526 PRKCQQ04759 706 aa9.03□□□□□ -0.96
LIG3-202ENST00000378526 VMACQ2NL98 169 aa9.03□□□□□ -0.96
LIG3-202ENST00000378526 RFFLQ8WZ73 363 aa9.03□□□□□ -0.96
LIG3-202ENST00000378526 PDLIM2Q96JY6 352 aa9.03□□□□□ -0.96
LIG3-202ENST00000378526 SAV1Q9H4B6 383 aaPredicted RBP9.03□□□□□ -0.96
LIG3-202ENST00000378526 SLC9A2Q9UBY0 812 aa9.03□□□□□ -0.96
LIG3-202ENST00000378526 RPL26L1Q9UNX3 145 aaKnown RBP9.03□□□□□ -0.96
LIG3-202ENST00000378526 CLIC4Q9Y696 253 aa9.03□□□□□ -0.96
LIG3-202ENST00000378526 HEATR9A2RTY3 570 aa9.03□□□□□ -0.96
LIG3-202ENST00000378526 CPA1P15085 419 aa9.03□□□□□ -0.96
LIG3-202ENST00000378526 ILF2Q12905 390 aaKnown RBP9.03□□□□□ -0.96
LIG3-202ENST00000378526 CHI3L2Q15782 390 aa9.03□□□□□ -0.96
LIG3-202ENST00000378526 FAM83BQ5T0W9 1011 aa9.03□□□□□ -0.96
LIG3-202ENST00000378526 THEMIS2Q5TEJ8 643 aa9.03□□□□□ -0.96
LIG3-202ENST00000378526 SEL1L3Q68CR1 1132 aa9.03□□□□□ -0.96
LIG3-202ENST00000378526 LRRC69Q6ZNQ3 347 aa9.03□□□□□ -0.96
LIG3-202ENST00000378526 DNAAF5Q86Y56 855 aa9.03□□□□□ -0.96
LIG3-202ENST00000378526 RETREG1Q9H6L5 497 aa9.03□□□□□ -0.96
LIG3-202ENST00000378526 TASP1Q9H6P5 420 aa9.03□□□□□ -0.96
LIG3-202ENST00000378526 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.03□□□□□ -0.96
LIG3-202ENST00000378526 C2orf74A8MZ97 194 aa9.03□□□□□ -0.96
LIG3-202ENST00000378526 LDLRP01130 860 aa9.03□□□□□ -0.96
LIG3-202ENST00000378526 EPRSP07814 1512 aaKnown RBP9.03□□□□□ -0.96
LIG3-202ENST00000378526 PTPN6P29350 595 aa9.03□□□□□ -0.96
LIG3-202ENST00000378526 ACTR2P61160 394 aa9.03□□□□□ -0.96
LIG3-202ENST00000378526 RPP38P78345 283 aaKnown RBP9.03□□□□□ -0.96
LIG3-202ENST00000378526 POU5F1Q01860 360 aaKnown RBP9.03□□□□□ -0.96
LIG3-202ENST00000378526 FAM83EQ2M2I3 478 aa9.03□□□□□ -0.96
LIG3-202ENST00000378526 ERMARDQ5T6L9 678 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms