RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 STX7O15400 261 aaKnown RBP4.27□□□□□ -1.73
USH2A-202ENST00000366942 GFRA3O60609 400 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 AGFG2O95081 481 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 PRNPP04156 253 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 CALB1P05937 261 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 ENO2P09104 434 aaPredicted RBP4.27□□□□□ -1.73
USH2A-202ENST00000366942 HBQ1P09105 142 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 SLC10A3P09131 477 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 MUTP22033 750 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 CMA1P23946 247 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 TPP2P29144 1249 aaPredicted RBP4.27□□□□□ -1.73
USH2A-202ENST00000366942 ADORA1P30542 326 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 GDI1P31150 447 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 DDIT3P35638 169 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 FOXC1Q12948 553 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 PTK7Q13308 1070 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 ENOSF1Q7L5Y1 443 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 KBTBD6Q86V97 674 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 FAM9CQ8IZT9 166 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 CARNMT1Q8N4J0 409 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 SGSM3Q96HU1 749 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 RPRD1AQ96P16 312 aaPredicted RBP4.27□□□□□ -1.73
USH2A-202ENST00000366942 DEPDC7Q96QD5 511 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 TMEM121Q9BTD3 319 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 FAM126AQ9BYI3 521 aaPredicted RBP4.27□□□□□ -1.73
USH2A-202ENST00000366942 MTMR12Q9C0I1 747 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 ARHGAP28Q9P2N2 729 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 TBC1D30Q9Y2I9 924 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 STXBP5LQ9Y2K9 1186 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 LTBP3Q9NS15 1303 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 FAM221BA6H8Z2 402 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 PAPSS2O95340 614 aaPredicted RBP4.27□□□□□ -1.73
USH2A-202ENST00000366942 CRYBA1P05813 215 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 HMBSP08397 361 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 HNRNPA1P09651 372 aaKnown RBP eCLIP4.27□□□□□ -1.73
USH2A-202ENST00000366942 ACTR1AP61163 376 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 GHRHRQ02643 423 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 STK4Q13043 487 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 TIGD6Q17RP2 521 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 ITPRIPL2Q3MIP1 535 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 HECTD3Q5T447 861 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 APOA5Q6Q788 366 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 ANGPTL8Q6UXH0 198 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 OTOP1Q7RTM1 612 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 SPPL2BQ8TCT7 592 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 ECHDC3Q96DC8 303 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 SIPA1Q96FS4 1042 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 QRFPRQ96P65 431 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 KLHL4Q9C0H6 718 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 ELOVL4Q9GZR5 314 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 BTBD1Q9H0C5 482 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 PRDM12Q9H4Q4 367 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 KCND1Q9NSA2 647 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 FAM217BQ9NTX9 383 aaPredicted RBP4.27□□□□□ -1.73
USH2A-202ENST00000366942 CWC15Q9P013 229 aaKnown RBP4.27□□□□□ -1.73
USH2A-202ENST00000366942 TBK1Q9UHD2 729 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 POU2F3Q9UKI9 436 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 KIAA1257Q9ULG3 409 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP4.27□□□□□ -1.73
USH2A-202ENST00000366942 SAMD9Q5K651 1589 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 TNFRSF10AO00220 468 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 E2F3O00716 465 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 LMNAP02545 664 aaKnown RBP4.27□□□□□ -1.73
USH2A-202ENST00000366942 NCF2P19878 526 aaPredicted RBP4.27□□□□□ -1.73
USH2A-202ENST00000366942 IGFALSP35858 605 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 FNTAP49354 379 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 VCPP55072 806 aaKnown RBP4.27□□□□□ -1.73
USH2A-202ENST00000366942 PRKCZQ05513 592 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 CRHR2Q13324 411 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 PPP6R3Q5H9R7 873 aaPredicted RBP4.27□□□□□ -1.73
USH2A-202ENST00000366942 MAP3K21Q5TCX8 1036 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 PHYKPLQ8IUZ5 450 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 ARHGAP24Q8N264 748 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 PDCL2Q8N4E4 241 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 HEXDCQ8WVB3 486 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 BHMTQ93088 406 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 GTPBP3Q969Y2 492 aaKnown RBP4.27□□□□□ -1.73
USH2A-202ENST00000366942 ARL5BQ96KC2 179 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 ZNF512BQ96KM6 892 aaPredicted RBP4.27□□□□□ -1.73
USH2A-202ENST00000366942 RUNDC3BQ96NL0 473 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 CNPY3Q9BT09 278 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 IER2Q9BTL4 223 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 TTPALQ9BTX7 342 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 NOC4LQ9BVI4 516 aaKnown RBP4.27□□□□□ -1.73
USH2A-202ENST00000366942 CARD6Q9BX69 1037 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 VCXQ9H320 206 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 IARS2Q9NSE4 1012 aaKnown RBP4.27□□□□□ -1.73
USH2A-202ENST00000366942 NFKBIL1Q9UBC1 381 aaPredicted RBP4.27□□□□□ -1.73
USH2A-202ENST00000366942 CFAP69A5D8W1 941 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 IFNA2P01563 188 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 MT-ND3P03897 115 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 CCT8P50990 548 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 SNRPD1P62314 119 aaKnown RBP4.27□□□□□ -1.73
USH2A-202ENST00000366942 C19orf57Q0VDD7 668 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 VGLL4Q14135 290 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 DHX34Q14147 1143 aaKnown RBP4.27□□□□□ -1.73
USH2A-202ENST00000366942 UAP1Q16222 522 aaPredicted RBP4.27□□□□□ -1.73
USH2A-202ENST00000366942 KLHL26Q53HC5 615 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 LYSMD4Q5XG99 296 aa4.27□□□□□ -1.73
USH2A-202ENST00000366942 PTRHD1Q6GMV3 140 aaKnown RBP4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms