RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 LRRC53A6NM62 1247 aa9.67□□□□□ -0.86
UPF2-202ENST00000357604 I3L4J1 428 aa9.67□□□□□ -0.86
UPF2-202ENST00000357604 ASS1P00966 412 aaKnown RBP9.67□□□□□ -0.86
UPF2-202ENST00000357604 CD44P16070 742 aaKnown RBP9.67□□□□□ -0.86
UPF2-202ENST00000357604 HOXA11P31270 313 aaPredicted RBP9.67□□□□□ -0.86
UPF2-202ENST00000357604 ATP5C1P36542 298 aaKnown RBP9.67□□□□□ -0.86
UPF2-202ENST00000357604 ZNF135P52742 658 aaPredicted RBP9.67□□□□□ -0.86
UPF2-202ENST00000357604 NAA35Q5VZE5 725 aa9.67□□□□□ -0.86
UPF2-202ENST00000357604 PRSS55Q6UWB4 352 aaPredicted RBP9.67□□□□□ -0.86
UPF2-202ENST00000357604 GSTA5Q7RTV2 222 aa9.67□□□□□ -0.86
UPF2-202ENST00000357604 FAM35AQ86V20 835 aa9.67□□□□□ -0.86
UPF2-202ENST00000357604 SLC2A14Q8TDB8 520 aa9.67□□□□□ -0.86
UPF2-202ENST00000357604 TMEM40Q8WWA1 233 aa9.67□□□□□ -0.86
UPF2-202ENST00000357604 HSFY1Q96LI6 401 aa9.67□□□□□ -0.86
UPF2-202ENST00000357604 RUNDC3BQ96NL0 473 aa9.67□□□□□ -0.86
UPF2-202ENST00000357604 DUSP16Q9BY84 665 aa9.67□□□□□ -0.86
UPF2-202ENST00000357604 CAPN11Q9UMQ6 739 aa9.67□□□□□ -0.86
UPF2-202ENST00000357604 F8W8V4 182 aa9.66□□□□□ -0.86
UPF2-202ENST00000357604 RNASEH1O60930 286 aaKnown RBP9.66□□□□□ -0.86
UPF2-202ENST00000357604 MICAL2O94851 1124 aa9.66□□□□□ -0.86
UPF2-202ENST00000357604 NCAM1P13591 858 aa9.66□□□□□ -0.86
UPF2-202ENST00000357604 ACO1P21399 889 aaKnown RBP9.66□□□□□ -0.86
UPF2-202ENST00000357604 GPD1P21695 349 aa9.66□□□□□ -0.86
UPF2-202ENST00000357604 SLC1A1P43005 524 aa9.66□□□□□ -0.86
UPF2-202ENST00000357604 NME3Q13232 169 aa9.66□□□□□ -0.86
UPF2-202ENST00000357604 GPR158Q5T848 1215 aa9.66□□□□□ -0.86
UPF2-202ENST00000357604 RFX6Q8HWS3 928 aa9.66□□□□□ -0.86
UPF2-202ENST00000357604 GOLGA6L1Q8N7Z2 621 aa9.66□□□□□ -0.86
UPF2-202ENST00000357604 UBA3Q8TBC4 463 aa9.66□□□□□ -0.86
UPF2-202ENST00000357604 KCNN1Q92952 543 aa9.66□□□□□ -0.86
UPF2-202ENST00000357604 CNOT8Q9UFF9 292 aaKnown RBP9.66□□□□□ -0.86
UPF2-202ENST00000357604 SLC38A8A6NNN8 435 aa9.66□□□□□ -0.86
UPF2-202ENST00000357604 TISP43B9A030 160 aa9.66□□□□□ -0.86
UPF2-202ENST00000357604 KRT7P08729 469 aa9.66□□□□□ -0.86
UPF2-202ENST00000357604 DEUP1Q05D60 604 aa9.66□□□□□ -0.86
UPF2-202ENST00000357604 RWDD4Q6NW29 188 aaKnown RBP9.66□□□□□ -0.86
UPF2-202ENST00000357604 RYBPQ8N488 228 aaPredicted RBP9.66□□□□□ -0.86
UPF2-202ENST00000357604 ANKRD52Q8NB46 1076 aa9.66□□□□□ -0.86
UPF2-202ENST00000357604 SLC35C1Q96A29 364 aa9.66□□□□□ -0.86
UPF2-202ENST00000357604 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP9.66□□□□□ -0.862e-10■■■■□ 20
UPF2-202ENST00000357604 MTRRQ9UBK8 725 aa9.66□□□□□ -0.86
UPF2-202ENST00000357604 TSPAN16Q9UKR8 245 aa9.66□□□□□ -0.86
UPF2-202ENST00000357604 LRRC37A2A6NM11 1700 aa9.66□□□□□ -0.86
UPF2-202ENST00000357604 ALDH1A2O94788 518 aa9.66□□□□□ -0.86
UPF2-202ENST00000357604 SKILP12757 684 aa9.66□□□□□ -0.86
UPF2-202ENST00000357604 SERPINB6P35237 376 aa9.66□□□□□ -0.86
UPF2-202ENST00000357604 PPM1FP49593 454 aaPredicted RBP9.66□□□□□ -0.86
UPF2-202ENST00000357604 GEMIN4P57678 1058 aaKnown RBP9.66□□□□□ -0.86
UPF2-202ENST00000357604 BYSLQ13895 437 aaKnown RBP9.66□□□□□ -0.86
UPF2-202ENST00000357604 NUGGCQ68CJ6 796 aa9.66□□□□□ -0.86
UPF2-202ENST00000357604 PBX4Q9BYU1 374 aa9.66□□□□□ -0.86
UPF2-202ENST00000357604 ZWILCHQ9H900 591 aa9.66□□□□□ -0.86
UPF2-202ENST00000357604 CCDC195A0A1B0GUA6 201 aa9.66□□□□□ -0.86
UPF2-202ENST00000357604 PIRO00625 290 aa9.66□□□□□ -0.86
UPF2-202ENST00000357604 GABRR2P28476 465 aa9.66□□□□□ -0.86
UPF2-202ENST00000357604 CDR2Q01850 454 aa9.66□□□□□ -0.86
UPF2-202ENST00000357604 CNGA2Q16280 664 aa9.66□□□□□ -0.86
UPF2-202ENST00000357604 TTC30AQ86WT1 665 aa9.66□□□□□ -0.86
UPF2-202ENST00000357604 C1orf127Q8N9H9 656 aa9.66□□□□□ -0.86
UPF2-202ENST00000357604 PPP1R2P1Q96PQ5 205 aa9.66□□□□□ -0.86
UPF2-202ENST00000357604 MRPL45Q9BRJ2 306 aaKnown RBP9.66□□□□□ -0.86
UPF2-202ENST00000357604 NHEJ1Q9H9Q4 299 aaPredicted RBP9.66□□□□□ -0.86
UPF2-202ENST00000357604 ZFP14Q9HCL3 533 aa9.66□□□□□ -0.86
UPF2-202ENST00000357604 PLAGL2Q9UPG8 496 aa9.66□□□□□ -0.86
UPF2-202ENST00000357604 PTPRJQ12913 1337 aa9.65□□□□□ -0.86
UPF2-202ENST00000357604 KRT3P12035 628 aa9.65□□□□□ -0.86
UPF2-202ENST00000357604 RGS7P49802 495 aa9.65□□□□□ -0.86
UPF2-202ENST00000357604 YWHAGP61981 247 aaKnown RBP eCLIP9.65□□□□□ -0.86
UPF2-202ENST00000357604 KCNA1Q09470 495 aa9.65□□□□□ -0.86
UPF2-202ENST00000357604 GPR17Q13304 367 aa9.65□□□□□ -0.86
UPF2-202ENST00000357604 PIGHQ14442 188 aaPredicted RBP9.65□□□□□ -0.86
UPF2-202ENST00000357604 GPR153Q6NV75 609 aa9.65□□□□□ -0.86
UPF2-202ENST00000357604 PEX26Q7Z412 305 aa9.65□□□□□ -0.86
UPF2-202ENST00000357604 MAFAQ8NHW3 353 aaPredicted RBP9.65□□□□□ -0.86
UPF2-202ENST00000357604 SPATA20Q8TB22 786 aa9.65□□□□□ -0.86
UPF2-202ENST00000357604 C11orf70Q9BRQ4 267 aa9.65□□□□□ -0.86
UPF2-202ENST00000357604 C17orf80Q9BSJ5 609 aa9.65□□□□□ -0.86
UPF2-202ENST00000357604 BCCIPQ9P287 314 aaKnown RBP eCLIP9.65□□□□□ -0.86
UPF2-202ENST00000357604 YIPF1Q9Y548 306 aa9.65□□□□□ -0.86
UPF2-202ENST00000357604 ZBED1O96006 694 aa9.65□□□□□ -0.86
UPF2-202ENST00000357604 KRT1P04264 644 aa9.65□□□□□ -0.86
UPF2-202ENST00000357604 CCDC130P13994 396 aa9.65□□□□□ -0.86
UPF2-202ENST00000357604 MRPS5P82675 430 aaKnown RBP9.65□□□□□ -0.86
UPF2-202ENST00000357604 HS1BP3Q53T59 392 aa9.65□□□□□ -0.86
UPF2-202ENST00000357604 TRMT11Q7Z4G4 463 aaKnown RBP9.65□□□□□ -0.86
UPF2-202ENST00000357604 GRK7Q8WTQ7 553 aa9.65□□□□□ -0.86
UPF2-202ENST00000357604 BRD9Q9H8M2 597 aa9.65□□□□□ -0.86
UPF2-202ENST00000357604 GOLGA2P5Q9HBQ8 144 aa9.65□□□□□ -0.86
UPF2-202ENST00000357604 DMAC2Q9NW81 257 aa9.65□□□□□ -0.86
UPF2-202ENST00000357604 UVRAGQ9P2Y5 699 aa9.65□□□□□ -0.86
UPF2-202ENST00000357604 FBXL5Q9UKA1 691 aa9.65□□□□□ -0.86
UPF2-202ENST00000357604 SLC12A8A0AV02 714 aa9.65□□□□□ -0.86
UPF2-202ENST00000357604 MGEA5O60502 916 aa9.65□□□□□ -0.86
UPF2-202ENST00000357604 MFAP3LO75121 409 aa9.65□□□□□ -0.86
UPF2-202ENST00000357604 CYP11A1P05108 521 aa9.65□□□□□ -0.86
UPF2-202ENST00000357604 RAB33AQ14088 237 aa9.65□□□□□ -0.86
UPF2-202ENST00000357604 STARD3Q14849 445 aa9.65□□□□□ -0.86
UPF2-202ENST00000357604 DAAM2Q86T65 1068 aa9.65□□□□□ -0.86
UPF2-202ENST00000357604 EFCAB13Q8IY85 973 aa9.65□□□□□ -0.86
UPF2-202ENST00000357604 CELF5Q8N6W0 485 aaKnown RBP9.65□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms