RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 BANF1O75531 89 aa22.87■■□□□ 1.25
SHMT1-202ENST00000352886 ARF4P18085 180 aaPredicted RBP22.87■■□□□ 1.25
SHMT1-202ENST00000352886 MIPP30301 263 aa22.87■■□□□ 1.25
SHMT1-202ENST00000352886 ATICP31939 592 aa22.87■■□□□ 1.25
SHMT1-202ENST00000352886 CTCFP49711 727 aaPredicted RBP22.87■■□□□ 1.25
SHMT1-202ENST00000352886 TAF5Q15542 800 aa22.87■■□□□ 1.25
SHMT1-202ENST00000352886 TAZQ16635 292 aa22.87■■□□□ 1.25
SHMT1-202ENST00000352886 PPP1R21Q6ZMI0 780 aa22.87■■□□□ 1.25
SHMT1-202ENST00000352886 TRABD2AQ86V40 505 aa22.87■■□□□ 1.25
SHMT1-202ENST00000352886 KCTD6Q8NC69 237 aa22.87■■□□□ 1.25
SHMT1-202ENST00000352886 HPDLQ96IR7 371 aa22.87■■□□□ 1.25
SHMT1-202ENST00000352886 HEXIM2Q96MH2 286 aaKnown RBP22.87■■□□□ 1.25
SHMT1-202ENST00000352886 ABCF3Q9NUQ8 709 aa22.87■■□□□ 1.25
SHMT1-202ENST00000352886 FARP1Q9Y4F1 1045 aaPredicted RBP22.87■■□□□ 1.25
SHMT1-202ENST00000352886 CITO14578 2027 aa22.86■■□□□ 1.25
SHMT1-202ENST00000352886 GPD2P43304 727 aa22.86■■□□□ 1.25
SHMT1-202ENST00000352886 HIF1AQ16665 826 aa22.86■■□□□ 1.25
SHMT1-202ENST00000352886 PCGF5Q86SE9 256 aa22.86■■□□□ 1.25
SHMT1-202ENST00000352886 HSPH1Q92598 858 aa22.86■■□□□ 1.25
SHMT1-202ENST00000352886 MAGEB18Q96M61 343 aa22.86■■□□□ 1.25
SHMT1-202ENST00000352886 CYP3A43Q9HB55 503 aa22.86■■□□□ 1.25
SHMT1-202ENST00000352886 AGAP1Q9UPQ3 857 aa22.86■■□□□ 1.25
SHMT1-202ENST00000352886 RNF8O76064 485 aa22.86■■□□□ 1.25
SHMT1-202ENST00000352886 P4HA1P13674 534 aa22.86■■□□□ 1.25
SHMT1-202ENST00000352886 GABRB2P47870 512 aa22.86■■□□□ 1.25
SHMT1-202ENST00000352886 GAD2Q05329 585 aa22.86■■□□□ 1.25
SHMT1-202ENST00000352886 FAM102AQ5T9C2 384 aaPredicted RBP22.86■■□□□ 1.25
SHMT1-202ENST00000352886 ILDR2Q71H61 639 aa22.86■■□□□ 1.25
SHMT1-202ENST00000352886 TDRPQ86YL5 185 aa22.86■■□□□ 1.25
SHMT1-202ENST00000352886 RFX6Q8HWS3 928 aa22.86■■□□□ 1.25
SHMT1-202ENST00000352886 ANKMY2Q8IV38 441 aa22.86■■□□□ 1.25
SHMT1-202ENST00000352886 UBA3Q8TBC4 463 aa22.86■■□□□ 1.25
SHMT1-202ENST00000352886 RSAD2Q8WXG1 361 aa22.86■■□□□ 1.25
SHMT1-202ENST00000352886 MCRS1Q96EZ8 462 aa22.86■■□□□ 1.25
SHMT1-202ENST00000352886 FRMD8P1Q9BZ68 369 aaPredicted RBP22.86■■□□□ 1.25
SHMT1-202ENST00000352886 VRTNQ9H8Y1 702 aa22.86■■□□□ 1.25
SHMT1-202ENST00000352886 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP22.86■■□□□ 1.25
SHMT1-202ENST00000352886 SLC12A4Q9UP95 1085 aa22.86■■□□□ 1.25
SHMT1-202ENST00000352886 PLXNA1Q9UIW2 1896 aa22.85■■□□□ 1.25
SHMT1-202ENST00000352886 FAM47DPA6NHR8 397 aa22.85■■□□□ 1.25
SHMT1-202ENST00000352886 DNAJC8O75937 253 aaPredicted RBP22.85■■□□□ 1.25
SHMT1-202ENST00000352886 NR1H3Q13133 447 aa22.85■■□□□ 1.25
SHMT1-202ENST00000352886 LAMC2Q13753 1193 aa22.85■■□□□ 1.25
SHMT1-202ENST00000352886 TMEM132DQ14C87 1099 aa22.85■■□□□ 1.25
SHMT1-202ENST00000352886 ANKRD22Q5VYY1 191 aa22.85■■□□□ 1.25
SHMT1-202ENST00000352886 IFNLR1Q8IU57 520 aaPredicted RBP22.85■■□□□ 1.25
SHMT1-202ENST00000352886 PPIL6Q8IXY8 311 aa22.85■■□□□ 1.25
SHMT1-202ENST00000352886 FUKQ8N0W3 1084 aa22.85■■□□□ 1.25
SHMT1-202ENST00000352886 LINC01465Q8N7H1 131 aa22.85■■□□□ 1.25
SHMT1-202ENST00000352886 CPT1BQ92523 772 aa22.85■■□□□ 1.25
SHMT1-202ENST00000352886 ADPGKQ9BRR6 497 aa22.85■■□□□ 1.25
SHMT1-202ENST00000352886 RNF181Q9P0P0 153 aa22.85■■□□□ 1.25
SHMT1-202ENST00000352886 GGT7Q9UJ14 662 aa22.85■■□□□ 1.25
SHMT1-202ENST00000352886 USP18Q9UMW8 372 aa22.85■■□□□ 1.25
SHMT1-202ENST00000352886 MAGEB2O15479 319 aa22.84■■□□□ 1.25
SHMT1-202ENST00000352886 SPAG7O75391 227 aa22.84■■□□□ 1.25
SHMT1-202ENST00000352886 SUN1O94901 812 aa22.84■■□□□ 1.25
SHMT1-202ENST00000352886 HMGCRP04035 888 aa22.84■■□□□ 1.25
SHMT1-202ENST00000352886 ZNF286BP0CG31 522 aa22.84■■□□□ 1.25
SHMT1-202ENST00000352886 CYP2C8P10632 490 aa22.84■■□□□ 1.25
SHMT1-202ENST00000352886 VDRP11473 427 aa22.84■■□□□ 1.25
SHMT1-202ENST00000352886 XRCC4Q13426 336 aa22.84■■□□□ 1.25
SHMT1-202ENST00000352886 FAM133BQ5BKY9 247 aaKnown RBP22.84■■□□□ 1.25
SHMT1-202ENST00000352886 ICE2Q659A1 982 aa22.84■■□□□ 1.25
SHMT1-202ENST00000352886 MAP1SQ66K74 1059 aaPredicted RBP22.84■■□□□ 1.25
SHMT1-202ENST00000352886 TAB3Q8N5C8 712 aaPredicted RBP22.84■■□□□ 1.25
SHMT1-202ENST00000352886 CMASQ8NFW8 434 aaPredicted RBP22.84■■□□□ 1.25
SHMT1-202ENST00000352886 MRRFQ96E11 262 aaKnown RBP22.84■■□□□ 1.25
SHMT1-202ENST00000352886 SGSM3Q96HU1 749 aa22.84■■□□□ 1.25
SHMT1-202ENST00000352886 CALN1Q9BXU9 219 aa22.84■■□□□ 1.25
SHMT1-202ENST00000352886 LOC102724159A0A0B4J2E5 919 aa22.84■■□□□ 1.25
SHMT1-202ENST00000352886 GSTA1P08263 222 aa22.84■■□□□ 1.25
SHMT1-202ENST00000352886 KRT15P19012 456 aa22.84■■□□□ 1.25
SHMT1-202ENST00000352886 PWP2Q15269 919 aaKnown RBP22.84■■□□□ 1.25
SHMT1-202ENST00000352886 PKN2Q16513 984 aaKnown RBP22.84■■□□□ 1.25
SHMT1-202ENST00000352886 KIF9Q9HAQ2 790 aa22.84■■□□□ 1.25
SHMT1-202ENST00000352886 PIK3R2O00459 728 aa22.83■■□□□ 1.25
SHMT1-202ENST00000352886 TRUB2O95900 331 aaKnown RBP22.83■■□□□ 1.25
SHMT1-202ENST00000352886 RPL22P35268 128 aaKnown RBP22.83■■□□□ 1.25
SHMT1-202ENST00000352886 MKRN3Q13064 507 aaKnown RBP22.83■■□□□ 1.25
SHMT1-202ENST00000352886 TAPT1Q6NXT6 567 aa22.83■■□□□ 1.25
SHMT1-202ENST00000352886 CYB5D1Q6P9G0 228 aa22.83■■□□□ 1.25
SHMT1-202ENST00000352886 SPATA21Q7Z572 469 aa22.83■■□□□ 1.25
SHMT1-202ENST00000352886 PAIP2Q9BPZ3 127 aaKnown RBP22.83■■□□□ 1.25
SHMT1-202ENST00000352886 TRABDQ9H4I3 376 aa22.83■■□□□ 1.25
SHMT1-202ENST00000352886 UBN1Q9NPG3 1134 aa22.83■■□□□ 1.25
SHMT1-202ENST00000352886 TRIP11Q15643 1979 aa22.83■■□□□ 1.25
SHMT1-202ENST00000352886 NDST1P52848 882 aa22.83■■□□□ 1.25
SHMT1-202ENST00000352886 WDR4P57081 412 aaKnown RBP22.83■■□□□ 1.25
SHMT1-202ENST00000352886 IL9RQ01113 521 aa22.83■■□□□ 1.25
SHMT1-202ENST00000352886 ACAP1Q15027 740 aa22.83■■□□□ 1.25
SHMT1-202ENST00000352886 UNC45BQ8IWX7 931 aa22.83■■□□□ 1.25
SHMT1-202ENST00000352886 NAT8LQ8N9F0 302 aa22.83■■□□□ 1.25
SHMT1-202ENST00000352886 AFG1LQ8WV93 481 aa22.83■■□□□ 1.25
SHMT1-202ENST00000352886 NLRP7Q8WX94 980 aa22.83■■□□□ 1.25
SHMT1-202ENST00000352886 ASNSD1Q9NWL6 643 aa22.83■■□□□ 1.25
SHMT1-202ENST00000352886 BARX2Q9UMQ3 279 aaPredicted RBP22.83■■□□□ 1.25
SHMT1-202ENST00000352886 APOC4-APOC2K7ER74 178 aa22.82■■□□□ 1.24
SHMT1-202ENST00000352886 APOC2P02655 101 aa22.82■■□□□ 1.24
SHMT1-202ENST00000352886 MNAT1P51948 309 aa22.82■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms