RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 FAM187AA6NFU0 413 aa13.51□□□□□ -0.25
CLK3-201ENST00000345005 PPEF2O14830 753 aa13.51□□□□□ -0.25
CLK3-201ENST00000345005 CAND2O75155 1236 aa13.51□□□□□ -0.25
CLK3-201ENST00000345005 PROSCO94903 275 aa13.51□□□□□ -0.25
CLK3-201ENST00000345005 MRPS25P82663 173 aaKnown RBP13.51□□□□□ -0.25
CLK3-201ENST00000345005 ZNF844Q08AG5 666 aa13.51□□□□□ -0.25
CLK3-201ENST00000345005 SV2CQ496J9 727 aa13.51□□□□□ -0.25
CLK3-201ENST00000345005 DCAF12L1Q5VU92 463 aa13.51□□□□□ -0.25
CLK3-201ENST00000345005 PHLDB2Q86SQ0 1253 aa13.51□□□□□ -0.25
CLK3-201ENST00000345005 UNC93AQ86WB7 457 aa13.51□□□□□ -0.25
CLK3-201ENST00000345005 GIMAP7Q8NHV1 300 aa13.51□□□□□ -0.25
CLK3-201ENST00000345005 ALG3Q92685 438 aa13.51□□□□□ -0.25
CLK3-201ENST00000345005 PLVAPQ9BX97 442 aa13.51□□□□□ -0.25
CLK3-201ENST00000345005 FAM129AQ9BZQ8 928 aa13.51□□□□□ -0.25
CLK3-201ENST00000345005 ERVK-5Q9HDB9 667 aa13.51□□□□□ -0.25
CLK3-201ENST00000345005 SLC38A7Q9NVC3 462 aa13.51□□□□□ -0.25
CLK3-201ENST00000345005 GDAP2Q9NXN4 497 aa13.51□□□□□ -0.25
CLK3-201ENST00000345005 HMGXB4Q9UGU5 601 aa13.51□□□□□ -0.25
CLK3-201ENST00000345005 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.51□□□□□ -0.25
CLK3-201ENST00000345005 KPNA7A9QM74 516 aa13.5□□□□□ -0.25
CLK3-201ENST00000345005 FGGP02679 453 aa13.5□□□□□ -0.25
CLK3-201ENST00000345005 TAF6P49848 677 aa13.5□□□□□ -0.25
CLK3-201ENST00000345005 RAB27AP51159 221 aa13.5□□□□□ -0.25
CLK3-201ENST00000345005 DRG2P55039 364 aaKnown RBP13.5□□□□□ -0.25
CLK3-201ENST00000345005 RWDD2BP57060 319 aa13.5□□□□□ -0.25
CLK3-201ENST00000345005 BYSLQ13895 437 aaKnown RBP13.5□□□□□ -0.25
CLK3-201ENST00000345005 SNCBQ16143 134 aa13.5□□□□□ -0.25
CLK3-201ENST00000345005 PREPLQ4J6C6 727 aaPredicted RBP13.5□□□□□ -0.25
CLK3-201ENST00000345005 LHX8Q68G74 356 aa13.5□□□□□ -0.25
CLK3-201ENST00000345005 MRPL10Q7Z7H8 261 aaKnown RBP13.5□□□□□ -0.25
CLK3-201ENST00000345005 GPATCH11Q8N954 259 aa13.5□□□□□ -0.25
CLK3-201ENST00000345005 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.5□□□□□ -0.25
CLK3-201ENST00000345005 KRT35Q92764 455 aa13.5□□□□□ -0.25
CLK3-201ENST00000345005 TRAIPQ9BWF2 469 aa13.5□□□□□ -0.25
CLK3-201ENST00000345005 AGO3Q9H9G7 860 aaKnown RBP13.5□□□□□ -0.25
CLK3-201ENST00000345005 PPANQ9NQ55 473 aaKnown RBP13.5□□□□□ -0.25
CLK3-201ENST00000345005 TRMT13Q9NUP7 481 aaKnown RBP13.5□□□□□ -0.25
CLK3-201ENST00000345005 IP6K2Q9UHH9 426 aa13.5□□□□□ -0.25
CLK3-201ENST00000345005 PADI3Q9ULW8 664 aa13.5□□□□□ -0.25
CLK3-201ENST00000345005 SUFUQ9UMX1 484 aa13.5□□□□□ -0.25
CLK3-201ENST00000345005 GIT1Q9Y2X7 761 aa13.5□□□□□ -0.25
CLK3-201ENST00000345005 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.5□□□□□ -0.25
CLK3-201ENST00000345005 O00370 1275 aa13.5□□□□□ -0.25
CLK3-201ENST00000345005 ZNF623O75123 536 aa13.5□□□□□ -0.25
CLK3-201ENST00000345005 MICAL2O94851 1124 aa13.5□□□□□ -0.25
CLK3-201ENST00000345005 GSTA1P08263 222 aa13.5□□□□□ -0.25
CLK3-201ENST00000345005 HSPA8P11142 646 aaKnown RBP13.5□□□□□ -0.25
CLK3-201ENST00000345005 LRPAP1P30533 357 aa13.5□□□□□ -0.25
CLK3-201ENST00000345005 HPDP32754 393 aaPredicted RBP13.5□□□□□ -0.25
CLK3-201ENST00000345005 LBX1P52954 281 aa13.5□□□□□ -0.25
CLK3-201ENST00000345005 ORC1Q13415 861 aa13.5□□□□□ -0.25
CLK3-201ENST00000345005 TRIM71Q2Q1W2 868 aaKnown RBP13.5□□□□□ -0.25
CLK3-201ENST00000345005 SEL1L2Q5TEA6 688 aa13.5□□□□□ -0.25
CLK3-201ENST00000345005 LLGL2Q6P1M3 1020 aa13.5□□□□□ -0.25
CLK3-201ENST00000345005 DNAJC24Q6P3W2 148 aa13.5□□□□□ -0.25
CLK3-201ENST00000345005 LCLAT1Q6UWP7 414 aa13.5□□□□□ -0.25
CLK3-201ENST00000345005 CPLX4Q7Z7G2 160 aa13.5□□□□□ -0.25
CLK3-201ENST00000345005 UBLCP1Q8WVY7 318 aaPredicted RBP13.5□□□□□ -0.25
CLK3-201ENST00000345005 C18orf8Q96DM3 657 aa13.5□□□□□ -0.25
CLK3-201ENST00000345005 SGSM3Q96HU1 749 aa13.5□□□□□ -0.25
CLK3-201ENST00000345005 SEC16BQ96JE7 1060 aa13.5□□□□□ -0.25
CLK3-201ENST00000345005 RUNDC3BQ96NL0 473 aa13.5□□□□□ -0.25
CLK3-201ENST00000345005 PPP1R10Q96QC0 940 aaKnown RBP13.5□□□□□ -0.25
CLK3-201ENST00000345005 MRPL45Q9BRJ2 306 aaKnown RBP13.5□□□□□ -0.25
CLK3-201ENST00000345005 TRIM7Q9C029 511 aa13.5□□□□□ -0.25
CLK3-201ENST00000345005 CENPHQ9H3R5 247 aa13.5□□□□□ -0.25
CLK3-201ENST00000345005 RABEP2Q9H5N1 569 aa13.5□□□□□ -0.25
CLK3-201ENST00000345005 RNF19AQ9NV58 838 aa13.5□□□□□ -0.25
CLK3-201ENST00000345005 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.5□□□□□ -0.25
CLK3-201ENST00000345005 WDR35Q9P2L0 1181 aa13.5□□□□□ -0.25
CLK3-201ENST00000345005 RASAL2Q9UJF2 1139 aa13.5□□□□□ -0.25
CLK3-201ENST00000345005 TCRBV5S1A1TA0A578 114 aa13.49□□□□□ -0.25
CLK3-201ENST00000345005 TMEM191CA6NGB0 347 aa13.49□□□□□ -0.25
CLK3-201ENST00000345005 PTGESO14684 152 aa13.49□□□□□ -0.25
CLK3-201ENST00000345005 PPP1R12AO14974 1030 aaPredicted RBP13.49□□□□□ -0.25
CLK3-201ENST00000345005 PPFIA2O75334 1257 aa13.49□□□□□ -0.25
CLK3-201ENST00000345005 DNAJC8O75937 253 aaPredicted RBP13.49□□□□□ -0.25
CLK3-201ENST00000345005 FAM163BP0C2L3 166 aa13.49□□□□□ -0.25
CLK3-201ENST00000345005 EZRP15311 586 aaKnown RBP13.49□□□□□ -0.25
CLK3-201ENST00000345005 ECHS1P30084 290 aa13.49□□□□□ -0.25
CLK3-201ENST00000345005 CD52P31358 61 aa13.49□□□□□ -0.25
CLK3-201ENST00000345005 MAN1A1P33908 653 aa13.49□□□□□ -0.25
CLK3-201ENST00000345005 CTCFP49711 727 aaPredicted RBP13.49□□□□□ -0.25
CLK3-201ENST00000345005 SEC24CP53992 1094 aa13.49□□□□□ -0.25
CLK3-201ENST00000345005 SOX4Q06945 474 aaPredicted RBP13.49□□□□□ -0.25
CLK3-201ENST00000345005 DHX34Q14147 1143 aaKnown RBP13.49□□□□□ -0.25
CLK3-201ENST00000345005 ZNF268Q14587 947 aaPredicted RBP13.49□□□□□ -0.25
CLK3-201ENST00000345005 LPIN1Q14693 890 aa13.49□□□□□ -0.25
CLK3-201ENST00000345005 SOWAHAQ2M3V2 549 aa13.49□□□□□ -0.25
CLK3-201ENST00000345005 WLSQ5T9L3 541 aa13.49□□□□□ -0.25
CLK3-201ENST00000345005 DCUN1D2Q6PH85 259 aa13.49□□□□□ -0.25
CLK3-201ENST00000345005 TMC3Q7Z5M5 1100 aa13.49□□□□□ -0.25
CLK3-201ENST00000345005 MIS12Q9H081 205 aa13.49□□□□□ -0.25
CLK3-201ENST00000345005 SLC40A1Q9NP59 571 aa13.49□□□□□ -0.25
CLK3-201ENST00000345005 ZSCAN5CA6NGD5 496 aaPredicted RBP13.48□□□□□ -0.25
CLK3-201ENST00000345005 M0QYV0 167 aa13.48□□□□□ -0.25
CLK3-201ENST00000345005 THP07101 528 aa13.48□□□□□ -0.25
CLK3-201ENST00000345005 SKIP12755 728 aa13.48□□□□□ -0.25
CLK3-201ENST00000345005 GPD2P43304 727 aa13.48□□□□□ -0.25
CLK3-201ENST00000345005 GABRB2P47870 512 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms