RNA–Protein interactions for RNA: ENST00000342988.7

SMAD4-201, Transcript of SMAD family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMAD4, Length 8,769 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-201ENST00000342988 LAYNQ6UX15 382 aa18.25■□□□□ 0.51
SMAD4-201ENST00000342988 SLC7A14Q8TBB6 771 aa18.25■□□□□ 0.51
SMAD4-201ENST00000342988 SENP7Q9BQF6 1050 aa18.25■□□□□ 0.51
SMAD4-201ENST00000342988 PI4KBQ9UBF8 816 aa18.25■□□□□ 0.51
SMAD4-201ENST00000342988 PFDN2Q9UHV9 154 aa18.25■□□□□ 0.51
SMAD4-201ENST00000342988 LCP1P13796 627 aa18.25■□□□□ 0.51
SMAD4-201ENST00000342988 ALDH1A3P47895 512 aa18.25■□□□□ 0.51
SMAD4-201ENST00000342988 RFX3P48380 749 aa18.25■□□□□ 0.51
SMAD4-201ENST00000342988 WDR35Q9P2L0 1181 aa18.25■□□□□ 0.51
SMAD4-201ENST00000342988 URB2Q14146 1524 aaKnown RBP18.25■□□□□ 0.51
SMAD4-201ENST00000342988 ALOX12P18054 663 aa18.24■□□□□ 0.51
SMAD4-201ENST00000342988 FAUP35544 74 aaKnown RBP18.24■□□□□ 0.51
SMAD4-201ENST00000342988 SLC29A2Q14542 456 aa18.24■□□□□ 0.51
SMAD4-201ENST00000342988 GALNTL6Q49A17 601 aa18.24■□□□□ 0.51
SMAD4-201ENST00000342988 DDI2Q5TDH0 399 aa18.24■□□□□ 0.51
SMAD4-201ENST00000342988 GNG14A0A1W2PPG7 69 aa18.24■□□□□ 0.51
SMAD4-201ENST00000342988 FTLP02792 175 aaPredicted RBP18.24■□□□□ 0.51
SMAD4-201ENST00000342988 POU1F1P28069 291 aa18.24■□□□□ 0.51
SMAD4-201ENST00000342988 TKTP29401 623 aaKnown RBP18.24■□□□□ 0.51
SMAD4-201ENST00000342988 FAM98BQ52LJ0 330 aaKnown RBP18.24■□□□□ 0.51
SMAD4-201ENST00000342988 KCNH4Q9UQ05 1017 aa18.24■□□□□ 0.51
SMAD4-201ENST00000342988 NCKAP5LQ9HCH0 1330 aa18.24■□□□□ 0.51
SMAD4-201ENST00000342988 ZSCAN18Q8TBC5 510 aaPredicted RBP18.24■□□□□ 0.51
SMAD4-201ENST00000342988 NEUROD4Q9HD90 331 aa18.24■□□□□ 0.51
SMAD4-201ENST00000342988 PRRG1O14668 218 aa18.24■□□□□ 0.51
SMAD4-201ENST00000342988 SWI5Q1ZZU3 235 aa18.24■□□□□ 0.51
SMAD4-201ENST00000342988 SUGP1Q8IWZ8 645 aaKnown RBP18.24■□□□□ 0.51
SMAD4-201ENST00000342988 IQCF2Q8IXL9 164 aa18.24■□□□□ 0.51
SMAD4-201ENST00000342988 GSAPA4D1B5 854 aa18.24■□□□□ 0.51
SMAD4-201ENST00000342988 TMEM114B3SHH9 223 aa18.24■□□□□ 0.51
SMAD4-201ENST00000342988 RAD51BO15315 384 aa18.24■□□□□ 0.51
SMAD4-201ENST00000342988 AGBL2Q5U5Z8 902 aa18.24■□□□□ 0.51
SMAD4-201ENST00000342988 PACS1Q6VY07 963 aa18.24■□□□□ 0.51
SMAD4-201ENST00000342988 C1orf232A0A0U1RR37 186 aa18.24■□□□□ 0.51
SMAD4-201ENST00000342988 FGAP02671 866 aa18.24■□□□□ 0.51
SMAD4-201ENST00000342988 LDOC1O95751 146 aaPredicted RBP18.24■□□□□ 0.51
SMAD4-201ENST00000342988 ZNF682O95780 498 aa18.24■□□□□ 0.51
SMAD4-201ENST00000342988 ILF2Q12905 390 aaKnown RBP18.24■□□□□ 0.51
SMAD4-201ENST00000342988 ARHGAP15Q53QZ3 475 aa18.24■□□□□ 0.51
SMAD4-201ENST00000342988 ZNF483Q8TF39 744 aaPredicted RBP18.24■□□□□ 0.51
SMAD4-201ENST00000342988 RNF25Q96BH1 459 aaPredicted RBP18.24■□□□□ 0.51
SMAD4-201ENST00000342988 CHCHD6Q9BRQ6 235 aa18.24■□□□□ 0.51
SMAD4-201ENST00000342988 PNMA8BQ9ULN7 279 aaPredicted RBP18.24■□□□□ 0.51
SMAD4-201ENST00000342988 UBN2Q6ZU65 1347 aa18.23■□□□□ 0.51
SMAD4-201ENST00000342988 IFNLR1Q8IU57 520 aaPredicted RBP18.23■□□□□ 0.51
SMAD4-201ENST00000342988 EVA1BQ9NVM1 165 aa18.23■□□□□ 0.51
SMAD4-201ENST00000342988 FBXO40Q9UH90 709 aa18.23■□□□□ 0.51
SMAD4-201ENST00000342988 SNRPAP09012 282 aaKnown RBP18.23■□□□□ 0.51
SMAD4-201ENST00000342988 SCNN1DP51172 638 aa18.23■□□□□ 0.51
SMAD4-201ENST00000342988 ITGA9Q13797 1035 aa18.23■□□□□ 0.51
SMAD4-201ENST00000342988 ERMARDQ5T6L9 678 aa18.23■□□□□ 0.51
SMAD4-201ENST00000342988 SLC13A5Q86YT5 568 aaPredicted RBP18.23■□□□□ 0.51
SMAD4-201ENST00000342988 PEX5LQ8IYB4 626 aa18.23■□□□□ 0.51
SMAD4-201ENST00000342988 AIFM2Q9BRQ8 373 aa18.23■□□□□ 0.51
SMAD4-201ENST00000342988 CIDEBQ9UHD4 219 aa18.23■□□□□ 0.51
SMAD4-201ENST00000342988 SMNDC1O75940 238 aaKnown RBP eCLIP18.23■□□□□ 0.51
SMAD4-201ENST00000342988 GAL3ST3Q96A11 431 aa18.23■□□□□ 0.51
SMAD4-201ENST00000342988 OTUD5Q96G74 571 aa18.23■□□□□ 0.51
SMAD4-201ENST00000342988 CCT8L2Q96SF2 557 aa18.23■□□□□ 0.51
SMAD4-201ENST00000342988 MARCOQ9UEW3 520 aaPredicted RBP18.23■□□□□ 0.51
SMAD4-201ENST00000342988 FAM20BO75063 409 aa18.23■□□□□ 0.51
SMAD4-201ENST00000342988 BPIFA3Q9BQP9 254 aa18.23■□□□□ 0.51
SMAD4-201ENST00000342988 TBC1D22BQ9NU19 505 aa18.23■□□□□ 0.51
SMAD4-201ENST00000342988 MAP10Q9P2G4 905 aa18.23■□□□□ 0.51
SMAD4-201ENST00000342988 BST2Q10589 180 aaKnown RBP18.23■□□□□ 0.51
SMAD4-201ENST00000342988 GRSF1Q12849 480 aaKnown RBP eCLIP18.23■□□□□ 0.513e-6■■■■□ 22.3
SMAD4-201ENST00000342988 PGS1Q32NB8 556 aa18.23■□□□□ 0.51
SMAD4-201ENST00000342988 LRRC74BQ6ZQY2 392 aa18.23■□□□□ 0.51
SMAD4-201ENST00000342988 TMEM26Q6ZUK4 368 aa18.23■□□□□ 0.51
SMAD4-201ENST00000342988 PPP1R16BQ96T49 567 aa18.23■□□□□ 0.51
SMAD4-201ENST00000342988 GFPT1Q06210 699 aaPredicted RBP18.23■□□□□ 0.51
SMAD4-201ENST00000342988 DNAJC1Q96KC8 554 aaKnown RBP18.23■□□□□ 0.51
SMAD4-201ENST00000342988 KCTD14Q9BQ13 255 aaPredicted RBP18.23■□□□□ 0.51
SMAD4-201ENST00000342988 TMEM79Q9BSE2 394 aa18.23■□□□□ 0.51
SMAD4-201ENST00000342988 FAM50BQ9Y247 325 aa18.23■□□□□ 0.51
SMAD4-201ENST00000342988 ARID1BQ8NFD5 2236 aaPredicted RBP18.23■□□□□ 0.51
SMAD4-201ENST00000342988 LGALS16A8MUM7 142 aa18.22■□□□□ 0.51
SMAD4-201ENST00000342988 F8VZ95 297 aa18.22■□□□□ 0.51
SMAD4-201ENST00000342988 RPS6KA3P51812 740 aa18.22■□□□□ 0.51
SMAD4-201ENST00000342988 C21orf59P57076 290 aa18.22■□□□□ 0.51
SMAD4-201ENST00000342988 OTUD4Q01804 1114 aaKnown RBP18.22■□□□□ 0.51
SMAD4-201ENST00000342988 RFFLQ8WZ73 363 aa18.22■□□□□ 0.51
SMAD4-201ENST00000342988 EMILIN2Q9BXX0 1053 aa18.22■□□□□ 0.51
SMAD4-201ENST00000342988 PAK5Q9P286 719 aa18.22■□□□□ 0.51
SMAD4-201ENST00000342988 ASAP1Q9ULH1 1129 aa18.22■□□□□ 0.51
SMAD4-201ENST00000342988 DYRK1BQ9Y463 629 aa18.22■□□□□ 0.51
SMAD4-201ENST00000342988 RBM7Q9Y580 266 aaKnown RBP18.22■□□□□ 0.51
SMAD4-201ENST00000342988 ABCC4O15439 1325 aa18.22■□□□□ 0.51
SMAD4-201ENST00000342988 KATNA1O75449 491 aa18.22■□□□□ 0.51
SMAD4-201ENST00000342988 THRAP10827 490 aa18.22■□□□□ 0.51
SMAD4-201ENST00000342988 CHN1P15882 459 aa18.22■□□□□ 0.51
SMAD4-201ENST00000342988 S100A2P29034 98 aa18.22■□□□□ 0.51
SMAD4-201ENST00000342988 PSME3P61289 254 aa18.22■□□□□ 0.51
SMAD4-201ENST00000342988 RAB6BQ9NRW1 208 aa18.22■□□□□ 0.51
SMAD4-201ENST00000342988 BTBD7Q9P203 1132 aa18.22■□□□□ 0.51
SMAD4-201ENST00000342988 PPIEQ9UNP9 301 aaKnown RBP18.22■□□□□ 0.51
SMAD4-201ENST00000342988 SNUPNO95149 360 aaKnown RBP18.22■□□□□ 0.51
SMAD4-201ENST00000342988 ITIH2P19823 946 aa18.22■□□□□ 0.51
SMAD4-201ENST00000342988 ADD1P35611 737 aaKnown RBP18.22■□□□□ 0.51
SMAD4-201ENST00000342988 MFSD14CQ5VZR4 134 aa18.22■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms