RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 MT-ND3P03897 115 aa23.45■■□□□ 1.34
TRIM28-202ENST00000341753 PHBP35232 272 aa23.45■■□□□ 1.34
TRIM28-202ENST00000341753 PGM5Q15124 567 aa23.45■■□□□ 1.34
TRIM28-202ENST00000341753 ZNF394Q53GI3 561 aa23.45■■□□□ 1.34
TRIM28-202ENST00000341753 KCNT1Q5JUK3 1230 aa23.45■■□□□ 1.34
TRIM28-202ENST00000341753 DCUN1D2Q6PH85 259 aa23.45■■□□□ 1.34
TRIM28-202ENST00000341753 C15orf39Q6ZRI6 1047 aa23.45■■□□□ 1.34
TRIM28-202ENST00000341753 MFN1Q8IWA4 741 aa23.45■■□□□ 1.34
TRIM28-202ENST00000341753 CEP170P1Q96L14 293 aa23.45■■□□□ 1.34
TRIM28-202ENST00000341753 RMDN3Q96TC7 470 aa23.45■■□□□ 1.34
TRIM28-202ENST00000341753 RPAP3Q9H6T3 665 aaPredicted RBP23.45■■□□□ 1.34
TRIM28-202ENST00000341753 SLC38A10Q9HBR0 1119 aa23.45■■□□□ 1.34
TRIM28-202ENST00000341753 FARP1Q9Y4F1 1045 aaPredicted RBP23.45■■□□□ 1.34
TRIM28-202ENST00000341753 TMEM63AO94886 807 aa23.44■■□□□ 1.34
TRIM28-202ENST00000341753 DLDP09622 509 aaKnown RBP23.44■■□□□ 1.34
TRIM28-202ENST00000341753 PHF13Q86YI8 300 aaPredicted RBP23.44■■□□□ 1.34
TRIM28-202ENST00000341753 PPFIBP2Q8ND30 876 aa23.44■■□□□ 1.34
TRIM28-202ENST00000341753 ATG4CQ96DT6 458 aa23.44■■□□□ 1.34
TRIM28-202ENST00000341753 IFT43Q96FT9 208 aa23.44■■□□□ 1.34
TRIM28-202ENST00000341753 TRIM4Q9C037 500 aa23.44■■□□□ 1.34
TRIM28-202ENST00000341753 VPS11Q9H270 941 aa23.44■■□□□ 1.34
TRIM28-202ENST00000341753 ACSS3Q9H6R3 686 aa23.44■■□□□ 1.34
TRIM28-202ENST00000341753 ZWILCHQ9H900 591 aa23.44■■□□□ 1.34
TRIM28-202ENST00000341753 TMEM191CA6NGB0 347 aa23.44■■□□□ 1.34
TRIM28-202ENST00000341753 H3BRJ5 948 aa23.44■■□□□ 1.34
TRIM28-202ENST00000341753 MAP3K7O43318 606 aa23.44■■□□□ 1.34
TRIM28-202ENST00000341753 ZBTB7AO95365 584 aa23.44■■□□□ 1.34
TRIM28-202ENST00000341753 LYPLA2O95372 231 aa23.44■■□□□ 1.34
TRIM28-202ENST00000341753 ENO1P06733 434 aaKnown RBP23.44■■□□□ 1.34
TRIM28-202ENST00000341753 TMEM191BP0C7N4 346 aa23.44■■□□□ 1.34
TRIM28-202ENST00000341753 OTUD4Q01804 1114 aaKnown RBP23.44■■□□□ 1.34
TRIM28-202ENST00000341753 ZACNQ401N2 412 aa23.44■■□□□ 1.34
TRIM28-202ENST00000341753 SEZ6Q53EL9 994 aa23.44■■□□□ 1.34
TRIM28-202ENST00000341753 TFDP3Q5H9I0 405 aa23.44■■□□□ 1.34
TRIM28-202ENST00000341753 ZBTB41Q5SVQ8 909 aa23.44■■□□□ 1.34
TRIM28-202ENST00000341753 NBPF12Q5TAG4 269 aaPredicted RBP23.44■■□□□ 1.34
TRIM28-202ENST00000341753 DRICH1Q6PGQ1 229 aaPredicted RBP23.44■■□□□ 1.34
TRIM28-202ENST00000341753 TAS1R3Q7RTX0 852 aa23.44■■□□□ 1.34
TRIM28-202ENST00000341753 EGFL6Q8IUX8 553 aa23.44■■□□□ 1.34
TRIM28-202ENST00000341753 IGDCC3Q8IVU1 814 aa23.44■■□□□ 1.34
TRIM28-202ENST00000341753 MTMR14Q8NCE2 650 aa23.44■■□□□ 1.34
TRIM28-202ENST00000341753 ACTL9Q8TC94 416 aa23.44■■□□□ 1.34
TRIM28-202ENST00000341753 RGS17Q9UGC6 210 aaPredicted RBP23.44■■□□□ 1.34
TRIM28-202ENST00000341753 WDR46O15213 610 aaKnown RBP23.43■■□□□ 1.34
TRIM28-202ENST00000341753 CDKN2BP42772 138 aa23.43■■□□□ 1.34
TRIM28-202ENST00000341753 AP1B1Q10567 949 aa23.43■■□□□ 1.34
TRIM28-202ENST00000341753 CYP4A22Q5TCH4 519 aa23.43■■□□□ 1.34
TRIM28-202ENST00000341753 OXNAD1Q96HP4 312 aaPredicted RBP23.43■■□□□ 1.34
TRIM28-202ENST00000341753 FGD4Q96M96 766 aa23.43■■□□□ 1.34
TRIM28-202ENST00000341753 MECRQ9BV79 373 aa23.43■■□□□ 1.34
TRIM28-202ENST00000341753 ZNF395Q9H8N7 513 aaPredicted RBP23.43■■□□□ 1.34
TRIM28-202ENST00000341753 ARHGEF4Q9NR80 690 aa23.43■■□□□ 1.34
TRIM28-202ENST00000341753 STX18Q9P2W9 335 aaKnown RBP23.43■■□□□ 1.34
TRIM28-202ENST00000341753 AGTPBP1Q9UPW5 1226 aa23.43■■□□□ 1.34
TRIM28-202ENST00000341753 DRG1Q9Y295 367 aaKnown RBP23.43■■□□□ 1.34
TRIM28-202ENST00000341753 TM9SF1O15321 606 aa23.43■■□□□ 1.34
TRIM28-202ENST00000341753 ZC3H11AO75152 810 aaKnown RBP eCLIP23.43■■□□□ 1.342e-13■■■□□ 16.2
TRIM28-202ENST00000341753 PYGBP11216 843 aa23.43■■□□□ 1.34
TRIM28-202ENST00000341753 SERPINB4P48594 390 aa23.43■■□□□ 1.34
TRIM28-202ENST00000341753 RASA2Q15283 850 aa23.43■■□□□ 1.34
TRIM28-202ENST00000341753 NUB1Q9Y5A7 615 aa23.43■■□□□ 1.34
TRIM28-202ENST00000341753 B2RBV5 119 aa23.42■■□□□ 1.34
TRIM28-202ENST00000341753 C4BPAP04003 597 aaKnown RBP23.42■■□□□ 1.34
TRIM28-202ENST00000341753 ITGAVP06756 1048 aa23.42■■□□□ 1.34
TRIM28-202ENST00000341753 MCCD1P59942 119 aaPredicted RBP23.42■■□□□ 1.34
TRIM28-202ENST00000341753 FAAP100Q0VG06 881 aa23.42■■□□□ 1.34
TRIM28-202ENST00000341753 ZBTB45Q96K62 511 aaPredicted RBP23.42■■□□□ 1.34
TRIM28-202ENST00000341753 SSU72Q9NP77 194 aaKnown RBP23.42■■□□□ 1.34
TRIM28-202ENST00000341753 MTO1Q9Y2Z2 717 aaKnown RBP23.42■■□□□ 1.34
TRIM28-202ENST00000341753 CTDP1Q9Y5B0 961 aaPredicted RBP23.42■■□□□ 1.34
TRIM28-202ENST00000341753 ZNF541Q9H0D2 1346 aa23.42■■□□□ 1.34
TRIM28-202ENST00000341753 KLHL33A6NCF5 533 aa23.42■■□□□ 1.34
TRIM28-202ENST00000341753 FAM155BO75949 473 aa23.42■■□□□ 1.34
TRIM28-202ENST00000341753 RARBP10826 455 aa23.42■■□□□ 1.34
TRIM28-202ENST00000341753 RPL22P35268 128 aaKnown RBP23.42■■□□□ 1.34
TRIM28-202ENST00000341753 MAP3K10Q02779 954 aa23.42■■□□□ 1.34
TRIM28-202ENST00000341753 C1QBPQ07021 282 aaKnown RBP23.42■■□□□ 1.34
TRIM28-202ENST00000341753 PTK7Q13308 1070 aa23.42■■□□□ 1.34
TRIM28-202ENST00000341753 PRKD1Q15139 912 aaPredicted RBP23.42■■□□□ 1.34
TRIM28-202ENST00000341753 DNAJC24Q6P3W2 148 aa23.42■■□□□ 1.34
TRIM28-202ENST00000341753 PPIL6Q8IXY8 311 aa23.42■■□□□ 1.34
TRIM28-202ENST00000341753 CYTH2Q99418 400 aa23.42■■□□□ 1.34
TRIM28-202ENST00000341753 DHRS4Q9BTZ2 278 aa23.42■■□□□ 1.34
TRIM28-202ENST00000341753 SNCAIPQ9Y6H5 919 aa23.42■■□□□ 1.34
TRIM28-202ENST00000341753 GJA3Q9Y6H8 435 aa23.42■■□□□ 1.34
TRIM28-202ENST00000341753 NFASCO94856 1347 aa23.42■■□□□ 1.34
TRIM28-202ENST00000341753 LOXHD1Q8IVV2 1947 aa23.42■■□□□ 1.34
TRIM28-202ENST00000341753 BASP1P80723 227 aaKnown RBP23.41■■□□□ 1.34
TRIM28-202ENST00000341753 KLHL38Q2WGJ6 581 aa23.41■■□□□ 1.34
TRIM28-202ENST00000341753 TREML1Q86YW5 311 aa23.41■■□□□ 1.34
TRIM28-202ENST00000341753 SLC25A41Q8N5S1 370 aa23.41■■□□□ 1.34
TRIM28-202ENST00000341753 NKD2Q969F2 451 aaPredicted RBP23.41■■□□□ 1.34
TRIM28-202ENST00000341753 ZNF184Q99676 751 aaPredicted RBP23.41■■□□□ 1.34
TRIM28-202ENST00000341753 MARCOQ9UEW3 520 aaPredicted RBP23.41■■□□□ 1.34
TRIM28-202ENST00000341753 XPO7Q9UIA9 1087 aaKnown RBP23.41■■□□□ 1.34
TRIM28-202ENST00000341753 KCNG1Q9UIX4 513 aa23.41■■□□□ 1.34
TRIM28-202ENST00000341753 PCNTO95613 3336 aa23.41■■□□□ 1.34
TRIM28-202ENST00000341753 CCDC195A0A1B0GUA6 201 aa23.41■■□□□ 1.34
TRIM28-202ENST00000341753 USP1O94782 785 aa23.41■■□□□ 1.34
TRIM28-202ENST00000341753 KITP10721 976 aa23.41■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms