RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 TGM6O95932 706 aa4.32□□□□□ -1.72
NEDD4-201ENST00000338963 PSMC3P17980 439 aa4.32□□□□□ -1.72
NEDD4-201ENST00000338963 MUTP22033 750 aa4.32□□□□□ -1.72
NEDD4-201ENST00000338963 PSMA2P25787 234 aa4.32□□□□□ -1.72
NEDD4-201ENST00000338963 MARCKSP29966 332 aaPredicted RBP4.32□□□□□ -1.72
NEDD4-201ENST00000338963 CREB5Q02930 508 aa4.32□□□□□ -1.72
NEDD4-201ENST00000338963 RELQ04864 619 aaPredicted RBP4.32□□□□□ -1.72
NEDD4-201ENST00000338963 CDC20Q12834 499 aa4.32□□□□□ -1.72
NEDD4-201ENST00000338963 TAF1BQ53T94 588 aaPredicted RBP4.32□□□□□ -1.72
NEDD4-201ENST00000338963 GNASQ5JWF2 1037 aa4.32□□□□□ -1.72
NEDD4-201ENST00000338963 SEL1L2Q5TEA6 688 aa4.32□□□□□ -1.72
NEDD4-201ENST00000338963 ZNF544Q6NX49 715 aa4.32□□□□□ -1.72
NEDD4-201ENST00000338963 NIPA1Q7RTP0 329 aa4.32□□□□□ -1.72
NEDD4-201ENST00000338963 USHBP1Q8N6Y0 703 aa4.32□□□□□ -1.72
NEDD4-201ENST00000338963 FNIP1Q8TF40 1166 aa4.32□□□□□ -1.72
NEDD4-201ENST00000338963 U2AF1L4Q8WU68 220 aaKnown RBP4.32□□□□□ -1.72
NEDD4-201ENST00000338963 BCL7CQ8WUZ0 217 aaPredicted RBP4.32□□□□□ -1.72
NEDD4-201ENST00000338963 MYDGFQ969H8 173 aa4.32□□□□□ -1.72
NEDD4-201ENST00000338963 LRRC39Q96DD0 335 aa4.32□□□□□ -1.72
NEDD4-201ENST00000338963 OSBPL11Q9BXB4 747 aa4.32□□□□□ -1.72
NEDD4-201ENST00000338963 FRMD8Q9BZ67 464 aaPredicted RBP4.32□□□□□ -1.72
NEDD4-201ENST00000338963 CLPBQ9H078 707 aa4.32□□□□□ -1.72
NEDD4-201ENST00000338963 VPS33BQ9H267 617 aa4.32□□□□□ -1.72
NEDD4-201ENST00000338963 HOMER2Q9NSB8 354 aa4.32□□□□□ -1.72
NEDD4-201ENST00000338963 THG1LQ9NWX6 298 aaKnown RBP4.32□□□□□ -1.72
NEDD4-201ENST00000338963 ING3Q9NXR8 418 aa4.32□□□□□ -1.72
NEDD4-201ENST00000338963 AMFRQ9UKV5 643 aa4.32□□□□□ -1.72
NEDD4-201ENST00000338963 GRID1Q9ULK0 1009 aa4.32□□□□□ -1.72
NEDD4-201ENST00000338963 PCDHGA3Q9Y5H0 932 aa4.32□□□□□ -1.72
NEDD4-201ENST00000338963 SALL1Q9NSC2 1324 aa4.32□□□□□ -1.72
NEDD4-201ENST00000338963 DUOX2Q9NRD8 1548 aa4.32□□□□□ -1.72
NEDD4-201ENST00000338963 ARHGAP42A6NI28 874 aa4.32□□□□□ -1.72
NEDD4-201ENST00000338963 BHMG1C9JSJ3 638 aaPredicted RBP4.32□□□□□ -1.72
NEDD4-201ENST00000338963 PRSS44E7EML9 344 aa4.32□□□□□ -1.72
NEDD4-201ENST00000338963 SH2B2O14492 632 aaPredicted RBP4.32□□□□□ -1.72
NEDD4-201ENST00000338963 BCL10O95999 233 aa4.32□□□□□ -1.72
NEDD4-201ENST00000338963 FUCA1P04066 466 aa4.32□□□□□ -1.72
NEDD4-201ENST00000338963 SERPING1P05155 500 aa4.32□□□□□ -1.72
NEDD4-201ENST00000338963 POLR3DP05423 398 aaPredicted RBP4.32□□□□□ -1.72
NEDD4-201ENST00000338963 ABHD2P08910 425 aa4.32□□□□□ -1.72
NEDD4-201ENST00000338963 GSTM1P09488 218 aa4.32□□□□□ -1.72
NEDD4-201ENST00000338963 MTHFD1P11586 935 aaKnown RBP4.32□□□□□ -1.72
NEDD4-201ENST00000338963 EVI2BP34910 448 aa4.32□□□□□ -1.72
NEDD4-201ENST00000338963 AMPD3Q01432 767 aa4.32□□□□□ -1.72
NEDD4-201ENST00000338963 PLEKHA7Q6IQ23 1121 aa4.32□□□□□ -1.72
NEDD4-201ENST00000338963 LHFPL5Q8TAF8 219 aa4.32□□□□□ -1.72
NEDD4-201ENST00000338963 APBB2Q92870 758 aa4.32□□□□□ -1.72
NEDD4-201ENST00000338963 C18orf8Q96DM3 657 aa4.32□□□□□ -1.72
NEDD4-201ENST00000338963 DNAJC1Q96KC8 554 aaKnown RBP4.32□□□□□ -1.72
NEDD4-201ENST00000338963 CALN1Q9BXU9 219 aa4.32□□□□□ -1.72
NEDD4-201ENST00000338963 ABI2Q9NYB9 513 aaPredicted RBP4.32□□□□□ -1.72
NEDD4-201ENST00000338963 ANAPC5Q9UJX4 755 aa4.32□□□□□ -1.72
NEDD4-201ENST00000338963 PLSCR1O15162 318 aa4.32□□□□□ -1.72
NEDD4-201ENST00000338963 KRT1P04264 644 aa4.32□□□□□ -1.72
NEDD4-201ENST00000338963 SFTPCP11686 197 aa4.32□□□□□ -1.72
NEDD4-201ENST00000338963 LSM12Q3MHD2 195 aaKnown RBP4.32□□□□□ -1.72
NEDD4-201ENST00000338963 METTL11BQ5VVY1 283 aa4.32□□□□□ -1.72
NEDD4-201ENST00000338963 ELMSAN1Q6PJG2 1045 aa4.32□□□□□ -1.72
NEDD4-201ENST00000338963 GIMAP8Q8ND71 665 aaPredicted RBP4.32□□□□□ -1.72
NEDD4-201ENST00000338963 LRRC20Q8TCA0 184 aa4.32□□□□□ -1.72
NEDD4-201ENST00000338963 TP53INP1Q96A56 240 aa4.32□□□□□ -1.72
NEDD4-201ENST00000338963 TTC17Q96AE7 1141 aa4.32□□□□□ -1.72
NEDD4-201ENST00000338963 INTS12Q96CB8 462 aaKnown RBP4.32□□□□□ -1.72
NEDD4-201ENST00000338963 ZNF496Q96IT1 587 aaPredicted RBP4.32□□□□□ -1.72
NEDD4-201ENST00000338963 DCLK3Q9C098 648 aa4.32□□□□□ -1.72
NEDD4-201ENST00000338963 STN1Q9H668 368 aaKnown RBP4.32□□□□□ -1.72
NEDD4-201ENST00000338963 DDX28Q9NUL7 540 aaKnown RBP4.32□□□□□ -1.72
NEDD4-201ENST00000338963 CCDC59Q9P031 241 aaKnown RBP4.32□□□□□ -1.72
NEDD4-201ENST00000338963 TRPM1Q7Z4N2 1603 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 A0A0A6YYK5 440 aaPredicted RBP4.31□□□□□ -1.72
NEDD4-201ENST00000338963 KRBA1A5PL33 1030 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 SULT1C4O75897 302 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 UPP2O95045 317 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 TCEA1P23193 301 aaKnown RBP4.31□□□□□ -1.72
NEDD4-201ENST00000338963 ZNF76P36508 570 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 EIF4A3P38919 411 aaKnown RBP4.31□□□□□ -1.72
NEDD4-201ENST00000338963 PTPN9P43378 593 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 ALDH1A3P47895 512 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 STARP49675 285 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 TMBIM6P55061 237 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 RPL10AP62906 217 aaKnown RBP4.31□□□□□ -1.72
NEDD4-201ENST00000338963 GEN1Q17RS7 908 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 KCNT1Q5JUK3 1230 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 SLC27A3Q5K4L6 730 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 KRT40Q6A162 431 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 UBE2J2Q8N2K1 259 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 ZFP28Q8NHY6 868 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 NRG4Q8WWG1 115 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 ANKS1AQ92625 1134 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 CCSER1Q9C0I3 900 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 RBM38Q9H0Z9 239 aaKnown RBP4.31□□□□□ -1.72
NEDD4-201ENST00000338963 STRIP2Q9ULQ0 834 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 PSMD13Q9UNM6 376 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 SRPRBQ9Y5M8 271 aaKnown RBP4.31□□□□□ -1.72
NEDD4-201ENST00000338963 SESN1Q9Y6P5 492 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 HMGXB3Q12766 1538 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 TNKSO95271 1327 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 STK36Q9NRP7 1315 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 RTL9Q8NET4 1388 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 ERVK-7P63135 1459 aa4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms